ClCG09G022465 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G022465
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr09: 39488695 .. 39490613 (-)
RNA-Seq Expression	ClCG09G022465
Synteny	ClCG09G022465

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGTCAATCTCTGCGGTTCTACTTGTGAAGTAACCAACATGTCGATGAAAAGAGAGGACAATTTGGGGGTTTTAGCTTTGAGAGAAGCCTCTTATTACTGTATTCCAAGAAAAAAAGATTAGGGTTTTGCATTTGCAGAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGGTAAAGTTGGTTGGAGATGATCGATTTTGATGTCGAAATTGGCGAAAGTGGAGGGTGCCCACAGAAACTTGTTAGCATTTTTCACTTCTGATTCTCAGGTTTTAGTGTTTACCTCACAGAACTCACAAAGTGGCTGAAGAAGGTGTAGAACTTTCCAATGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCGGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGGTATTGTTTCTTTCTAATCCAGCTATAGTGCAAATGGCAAGCTTAGGATTCACTTTTAGACTTTCCACTTTAAAATCGTATTCACCTTCACCATTTTTGTTTTGAAACTTTTGGCGTGGACTGGACCTGAATTAAGGACTTCCATTCAAAATGTGCAGTACTTTTTCTATTTGGGTTTTATTTAGAATATTCATGCACTGGTTAGATCTTAAAAAAATTGATGTCCTTAAGAACTTTCTGTAGTTAATGTTTGGTATTTGGGCTATTTTGAGTTTATCAAAGACTGTTTATATATATGTATGTGAACATTCTTGTCAGGATTGATTATCTAACTGAATTTCCTTCAACTACCTTGGACTTATATAAGCAAGGGATATTTAAGTAAAAAAGATTCAGTGGTGACCCATTGTCCTCCAAATTAGGATTCCCCATTAATCAATTGCACTGTAGTTAGTCAAGATTGTGGGATCAGAAGGAAATAATTAGGCAGGAAAAAGATGAACCCATTTTAATACATCCATGCTGAAGTGGCCAGAAAGGAGAAGGGGAAAAAAATAAACATATCATAACCATCATTACAGCAACGATTATCAGTAAGCAGCCCACATTAAAGAACTAAATTTCAATCATATCTTTCTTTTTATTTTCTTTTTGTTAACCATCCTCGGGCTTCCCCCCATTTTGATTTCCCTCTCTTTTCCTTCCTCTGTCTCTCATTTGCTCGCACCCCCCTACACCCTATGTCTACTCTCTCTCTCTCTCTCTCCACCCAAAGAAAAAGGGGGCACTTGTACTTTCGAAATGGATATTTTACAGGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGGTAATGATGCCACTCCACAATATCATTTCGAATTCTCTATATTTAAACCAGAAGGAAAGCAGGAAGCTCTGATAACTAAGGAACTATCATCTAAAAAGTGGGAGGATGAGGAACAGCCTGCTCATTAGAGGAAGAACAGGAGGATTGACCCATGACTGGGTTATACACAGCCTAATATTCCTCATTCTTGGTCATTTTCTCTATCCAGGTGACTGATTATTCATTTCTTCTGTAAATTTGGAGTCTATGTGAGGATCAAACGGCTATTTAGATATTTCTGTTACAGGCATTTAATGCATTCCGATTGAATTTTCTTGCATTTATACAGTTAAAGCATGTACCTTTTCTTCTCTCATCTACTGTCTGCTACACAACCTTAAATGCCCATTAATTGTATTTCTGCCGCATTATTCAAAATTGTCTTTTTTCTAAGGGCCATATTTATGGTTTCATATTCATCTTTTTTCCCCAGAACTGAGCGAATTGAAGTTTCTCGTTTTCCTTCCCATTTGGGTCTTCCGCGAATGACTGTTCTGAGTTGTAGATTGTGA

mRNA sequence

ATGGAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGAACTCACAAAGTGGCTGAAGAAGGTGTAGAACTTTCCAATGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCGGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGCAACGATTATCAGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGAACTGAGCGAATTGAAGTTTCTCGTTTTCCTTCCCATTTGGGTCTTCCGCGAATGACTGTTCTGAGTTGTAGATTGTGA

Coding sequence (CDS)

ATGGAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGAACTCACAAAGTGGCTGAAGAAGGTGTAGAACTTTCCAATGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCGGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGCAACGATTATCAGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGAACTGAGCGAATTGAAGTTTCTCGTTTTCCTTCCCATTTGGGTCTTCCGCGAATGACTGTTCTGAGTTGTAGATTGTGA

Protein sequence

MERPNMRLAAKESLAWPDLIKWARNCCRSLMVVQYLSAIERTHKVAEEGVELSNGVAMAETPSSNSNLGQGHHPPEKRSHYSHGPLQRLSDKECKVFNFPTRTERIEVSRFPSHLGLPRMTVLSCRL

Homology

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BLAST of ClCG09G022465 vs. NCBI nr
Match: KAG7012048.1 (hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 41  RTHKVAEEGVELSNGVAMAETPSSNSNLGQGHHPPEKRSHYSHGP 86
           RTH+VAEEGVELS+GVAMAETPSSNSNL +GHHPP+KRSH++HGP
Sbjct: 69  RTHEVAEEGVELSSGVAMAETPSSNSNLRRGHHPPKKRSHHTHGP 113

The following BLAST results are available for this feature:

BLAST of ClCG09G022465 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012048.1	3.1e-12	84.44	hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of ClCG09G022465 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG09G022465 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG09G022465 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G022465.1	ClCG09G022465.1	mRNA