ClCG09G016760 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G016760
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	cleavage and polyadenylation specificity factor subunit 3-II
Location	CG_Chr09: 32772353 .. 32778874 (-)
RNA-Seq Expression	ClCG09G016760
Synteny	ClCG09G016760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGTCCTAGTTGCGATTTTCGCATCCCAACCATTTTTGCATCCCACTGCTCGTTGGTCGCGTTTTTTGGGTATCAACATTCGTCCGCAATGTCTCTGCCAGTCGACTATTTCTGTATTGTCGTCCACTGGTTTTCGTGGCTCACTGTTGCTCTCCCCTGCCCATCGTCGCCATTCTCCACTGCTGGGTTGTCTTTCTTCCCTTTGTTGGTCTTTTTGGGCCTTTTTTGGTATGTTTTCTTTAGGTTTAATTTTTTCAAGAATATGTCAAAAACCAAGTCAACTATTGCTAAATTCTAGACAATTGCATCAATTCCAACAACCCGACTATCCAAATAACCACCATTCAACTTAATGGAACAACTTTCTTCGTTGGTCCCAAAGCGTTTGGATGTATATTCGTGGACAAGGGAAGATTGGTTACATTACTGGAGAAAAAACTGCCCTTAGCCTAGATGACCCTTCTTTTGCTGGGTGGGACGCTGAAAACTCTATGGTTGAAGACATCAACTATAACTACATGTGTTACTCTACTGCCAAGGAATTATGGGATAGTGTCACTCAAATGTTTTCTGATTTGGGCAACCAGTCACAAGTGTTTGAGTTAAATCTTAAACTGGGAGATATACGACAAGTAGGTATTCAATTACACAATACTTTCACTCCATAAAAAGGATTTGGCATGACCTTGACCTCTTTGATATGTATGGGTTTGTCTACAGAGGACCAAAAACACTACAGAAAAATTGTAGAAGACGGTTGTATTTACAAATTCTTTGTCGACCTCAATGTTGAGTTTGATGAGGTTAGAGGTATGATACTTGGGAAAATTACTCTTCCAACTATTATTGATGTTTTAATTTTTTTTTCCTGAGGTTCGCAAGAATGTTATGATTGGCAAAAGAAACTATTGGTTTAGTTGAAAGTTCTGCATTGGTGATTGAAAATATTGCATTGAAATCCAACAAGACACATGAGAAGTCTCGTGTTTGGTGCGATTATTGTAATAAACCTTGACATACGCTTGAAACTTTTTTAAAACTTCATGGAAAACCTGCGAATTGGAAAAGTTCTATGCAAGGTGAGAGAAATTCTCATTTGTATACCTCTGATGCTACTGTTGTTGACTACAACCCATTTAATAAAGAGCGAGGTAAGAAATTTTGAAGTTGCTAAAGGCTAATACACCATCTGGTAATTCTAGTGTTTCTTTGGCACAATCAGGTACTTGTCCTCAAGATATATGACTAGATTATATATTATGGGGGCACTTATCATATGACTAGACTCTTTTGTTTATTTGAACCATACTCTCCTGTGTATTGCAATGAAAAAATTTGCATTGCCGATGGTAGTTTCCCCGCTTTTCCAGGAAAATGAACTATTCCTTTGACTACAAAACTAACGGTACATTCTCTCCTTCATGTTCCAAAATTAGTTTGCAGTTTGTTAGCTATTAGTAAAATCTCTATGGATGCCAACGATCGTGTTATTTTCTATGAAACTAATTGTACCTTTTAGAATCAAGACTCAGAGGAGACAATTGGACGTACTAGGATGATTGATGGTCTCTATTACTTTGATGAAGTTTCAACTAGTCGTAAAAAAGTTCAGAGTAGTGTCTGTTCTCTTTCTATTAAATTAACTATAATGCTTTGGCATCATCAATTTATTTAAAGGATTTGATTGTTCAATTTTTAATGTGAAAGTTGCATTTTTGCCAAACATTACCGATCCACTTATTTGCCCGAACCTTACAAGGCTTCCTCACCTTTTTACTTAATTCATACTAATATCTGGGGTCCGTCTAAAGTTTTGACTCATAGTGGTAAGTGTTGGTTTTACCTTTATAGATGATCACACTCGTTGAACTTGACTTTATTTATTAACAAAAAAGTCAGAGGTAAAAGAGGTTTTTGTTTGGTTTTACAATATGATTGAAACTCAATTTTAAACTGAAATTTGCATTTTTCACTTTGATAATGATACTGAATATTTCAATTAACAATTAACCAATTTTTTTGCAAGATAAGAGTATTTTTCATCATGCTACATGTTGTGACACTCCTTAGCTAAATGACATTGCTGAGCGAAAGAATAGACATTTACTTGAAGTTGCTCGTGCCCTTATAGCTAATCAATGGAATGCCGACAAAGGTTTTGAATTTGAGAACTCCTTTGAATCACTTCAAAGAGTTGTTTCCTACTATCTGTCTGTCCTTTAATTTACCAATTAAATTATTTGGGTGTACTGCTTATGTTCATACTCCTACCCTTTCTTAACCTAAACTTGATCCTCGAGCCATTAAATGCATTTTTGTAGGTTGTCTCTCATAATAAGGCCTACAAATATTTTGATTCGTTGACCAACAAGTATTTTTGTCTTTTTTGGAAAATCAATCCTTTTTTAGCCCAAATTCTCTCCATGGAGAGACATCTAACCTTGAAGATAATTTTTGGGACACTTCACCTCTCCCAAACATCATTGGTTTTGGAATTATGAGTTCTAGTCTTTTGATGCCAAGTGTGGAAAGTTCTTCACGGGGAGAAACACTACAAATTGACTCAACAAGTCAAAATTCTGAATTTCAGGTTTATACTAGATGAAACATGACTCAAAGGGATCGAGCCTAGATAGTTGACTTGTGATAGGACCAATGCAATGCTCTGATGAATGATTTTGAAGATCTAGGTGTTAGAGACTCCTACTTCTTCATCTCTTTGTAATCTTTTACCTGATGTCTCTGATCTTGATATTCTAATTGCCCATAGAAAGGAACTTGTAAATGTATCAAATATCTCATTGCAAACTATCTTTCTTATCATTGATTGTCCGACTGTCATAAAACCTTCACATCCAAAATAACCAACCTGTTTATTCCAAGGAATATACAGGAAGCCTTAAATGATTTGAATTGGAAATTAGCAGTGACGGAGGAGATGAATGCGCTAAAACAAAATTACACATGGTTATAGTTGAATTGCTAGATTGGTTGCTAAGGGGTTTACTTAGACCTATGGAGTTAATTACCAAGAAACATTTGCTCCAGTTGCTAAAATTAATTCTATCAAAATTCTGTTGCCTGTTGCAATTAATTTTGATTGGCCTCTTTATCAACTGGATGTTAAGAATGCCTTTCTAAATAGGGATCTTGAAGAAGAGGTATTTATGGACTTGCCACATGGTTTTGACGTGGATCTTGGGATTAATAAAGTGTGCACAAGAAATCATTATATGGTCTCAAACAGTCTCCTAAAGCCTAGTTTGAATGTTTTCAAAAGGCAGTCACGAGCTATGGATTCAGGCAAAGTCATGCTAATCATACAATGTTCTACAAGCATACATAAAATGACAAGGTCGTTTTGATAGTGTATGTTGATATCATATCTACATGTAATGATGAGACAGAACTGACTTTTGTGAAAGAAAAGCCAACTAATGATATTCAAATCAAGGACCTGGAAGCCTTTAAGTATTTCCTAGGCATGGACTTTACCAGGTCCAAAAGTGTCATTCTTGTCAAATAAAAGAAGTATATTCTTAATCTACTGATAGAGATAGGTTTACTTGGTTGCAATATACCAGAAAATCCCATTGAGCAGAATTTGAAATCGGAAGCTACAACAAAAGAAGAGCTAAAAGAAAAAGAAAAGTACTATGGACTTGTGAGGAGACTCACGCACGTCCTGACATCGCTTTTGAAGTTAGTATGATAAGTCAGTTCATGTATGCTCCTCAGCCAGCTCACTTTGATGTAGTTTATAGAATCCTAAGAAGAGAAAAGGAATATTGTTTAAAAAACATGACCACATACATGTTGAGGTTTACACTGATGTTGATTGGGAAGGTAGCATGACTAATAGAAGATCCATTTCTGGGTATTGCTCCTTCGTTGGAGGAAATCTAGTTACTTGGCGAGTAAAAAACAAAGTGTGGTCGCAAGAAGTAGTGCTATAGAAGAATTTAGGGCATTAGCCCATGGTATTTGCGAGGGCATATGGATAAGGAAGACTATTGGAAGAATTGAGATTCTGTCAGATGATGCCTATGCGCATTTATTGTAATAACAAGACAGCAATTTCCATCGCCCAAAATCTAGTTCTTCATGATAGAACTAAACATATTGAAGTTGATAAACACTTTATAAAGGAGAAGATCGATGCGGGAGTAATATGTATTCCCTACCTTCCGACAATAGAGCAAATTGTAGATGTGTTAACTAAAGGCCTTGCAAAGTGGCAATTCAACAACTTGATTGACAAGTTGGTCATGAATGATATCTTCAAACAAGCTTGAGGGGAAGTGTTGATTATTTCCTTTTTTGTTAATATTGCATTGTATTTATTGTGATACATTTGTTGTATTTTTATTTTCCTTACTTGTAAGGAGTGTTTCTTCTCTTTAAGAAAATTCTTTCTTTCTAATAGAAATATTTTTCAGTAATGATAGCAGGTGGTCTAGGGAGGTCCTGTGTTGATGTGCTTGCAATGTTATTTCTTCTCCAATTAAAATTGATTTTCACTTGTTGGGTTTTCTTTATAATTCAAGTCTACAAGTGAGGGAGAGTGTTAGATGATATAATTAAATTTGCCTTCAGGGATTTAACACAAGGAATATAATACAGTTTCTTCTTCTGTTGGAGGGTAACAAATAAATAGAAAAATTGAAAAATAACAATATCTTATAATGGCTGCTCTTTCGTGGTTTTTCTCAAAAAAAATATTATTACTATCATTTCTGGGAAAAATATCAATTTCTACCCTTAAGCTTTAGAATTGTATCAATTGAAACCCTAAACTTTTGTGAGTGTATCAATTTGCACCCTCCATTATGTCCTTGAAAAAATCATGTCTGAAATTTATAATTGTATCAATTAAACTCCTAAACTTTCATAAATGAATCAAATTAGACTCTTAGATAAAATTTCCTTTGAAAATCATTTGTGCATTTACCTTAATCGTCCATTTTGTAAAACCAACATTTGAAGAAGTCTATGCACGTTCGAGAATTAATGCATGGATGATTAAATATAATTGTGATGAAAAGTTTTAATTGATTGGCTTATGAAAATTTAGGAGTTTAATTGACTTGAATTATCAGTTTCACACGGTTATTGTTGAATGAAATTTGGATAAATTGATACACTTACATAACTTTGGGGTTTAAATTGATACAATTATTGGTTTAGGGGTGTAAATTGATATTTGCCCTTATCTTTTGTAGTTACACACACATAAAAACAAAAAAAAACAATTGATGCATATGATTAATTCAAATTCTTTCTTAGTTTTTGAAATCAGATGAGAATGTGCGTGAGAATGAGAGATGAGGTTGTTGTACTTGGCAAGTGAATGGATATTTTATTTTAGTAATTGTGGAATCAGTGTTTTATTTTTGATTGGACAAACAGCTTGAGCAATTGGGTGAATTCAGACATGTGAATGAAAATGGGATTGAAACATGCATATAGGGTCTGGATTTGCAAAAAAGAAAAAAGTACTGGGAATGTTTATGGATCGACCCAATATTTTAAGTTGACCTGGTTGAACTTCTGTTTCCTTTTATTATTAATATATTCTTTTTATAGTGATGCAATCATTGTATTCAATTTTCCCAACTGTATAAATGTTTCATCCCAGGTTCACCAACTGGCATTCAGTCCACATACTGATTCCAAAGGAATTATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGCTACTTTAAAGGAGAGAATTCATTCTGAACTTGGAATCCCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCTAATTTCAAGTTTTTGAAAAGAAACTTGAATGATAAGATTGATCCAAGTTGCAAAGCAGGAGTAGGAGGAACTTCAAGCTTGTTTATACGCAAATGCTCGGATCTCCATTTCAAGCATTTGAATAGAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAAAGAAGGAGTCTTGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTATTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAATTGTAGACCCATATATGTTGGAAACCTAGATGAGACCCATGTTATGAATTGCTTATCTAGAAAATCTGTATGGCTTTCCCAGCTATTTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATCTTGGTGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCCAAGGAAAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATGTGCTATAGTATTTTGTTGCTGTAGTTGGCTAGTTGCAGATGAAATCCTTGCATGGAAAATCATTTCTATCTTGGAGAAGCATGATCTCGGTTCAACATGA

mRNA sequence

ATGTCACGTCCTAGTTGCGATTTTCGCATCCCAACCATTTTTGCATCCCACTGCTCGTTGGTCGCGTTTTTTGGGTATCAACATTCGTCCGCAATGTCTCTGCCAGTCGACTATTTCTGTATTGTCGTCCACTGGTTTTCGTGGCTCACTGTTGCTCTCCCCTGCCCATCGTCGCCATTCTCCACTGCTGGGTTGTCTTTCTTCCCTTTGTTGGTCTTTTTGGGCCTTTTTTGCGTTTGGATGTATATTCGTGGACAAGGGAAGATTGGTTACATTACTGGAGAAAAAACTGCCCTTAGCCTAGATGACCCTTCTTTTGCTGGGTGGGACGCTGAAAACTCTATGGTTGAAGACATCAACTATAACTACATGTGTTACTCTACTGCCAAGGAATTATGGGATAGTGTCACTCAAATGTTTTCTGATTTGGGCAACCAGTCACAAGTGTTTGAGTTAAATCTTAAACTGGGAGATATACGACAAGTAGAGGACCAAAAACACTACAGAAAAATTGTAGAAGACGGTTGTATTTACAAATTCTTTGTCGACCTCAATGTTGAGTTTGATGAGGTTAGAGAAACTATTGGTTTAGTTGAAAGTTCTGCATTGGTGATTGAAAATATTGCATTGAAATCCAACAAGACACATGAGAAGTCTCGTGTTTGTTCTATGCAAGGTGAGAGAAATTCTCATTTGTATACCTCTGATGCTACTGTTGTTGACTACAACCCATTTAATAAAGAGCGAGAAAATCCCATTGAGCAGAATTTGAAATCGGAAGCTACAACAAAAGAAGAGCTAAAAGAAAAAGAAAAGTACTATGGACTTGTGAGGAGACTCACGCACGTCCTGACATCGCTTTTGAATCCACATACTGATTCCAAAGGAATTATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGCTACTTTAAAGGAGAGAATTCATTCTGAACTTGGAATCCCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCTAATTTCAAGTTTTTGAAAAGAAACTTGAATGATAAGATTGATCCAAGTTGCAAAGCAGGAGTAGGAGGAACTTCAAGCTTGTTTATACGCAAATGCTCGGATCTCCATTTCAAGCATTTGAATAGAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAAAGAAGGAGTCTTGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTATTCTTGGGAGAACAAGAGCATGAGCTATTTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATCTTGTATTTTGTTGCTGTAGTTGGCTAGTTGCAGATGAAATCCTTGCATGGAAAATCATTTCTATCTTGGAGAAGCATGATCTCGGTTCAACATGA

Coding sequence (CDS)

ATGTCACGTCCTAGTTGCGATTTTCGCATCCCAACCATTTTTGCATCCCACTGCTCGTTGGTCGCGTTTTTTGGGTATCAACATTCGTCCGCAATGTCTCTGCCAGTCGACTATTTCTGTATTGTCGTCCACTGGTTTTCGTGGCTCACTGTTGCTCTCCCCTGCCCATCGTCGCCATTCTCCACTGCTGGGTTGTCTTTCTTCCCTTTGTTGGTCTTTTTGGGCCTTTTTTGCGTTTGGATGTATATTCGTGGACAAGGGAAGATTGGTTACATTACTGGAGAAAAAACTGCCCTTAGCCTAGATGACCCTTCTTTTGCTGGGTGGGACGCTGAAAACTCTATGGTTGAAGACATCAACTATAACTACATGTGTTACTCTACTGCCAAGGAATTATGGGATAGTGTCACTCAAATGTTTTCTGATTTGGGCAACCAGTCACAAGTGTTTGAGTTAAATCTTAAACTGGGAGATATACGACAAGTAGAGGACCAAAAACACTACAGAAAAATTGTAGAAGACGGTTGTATTTACAAATTCTTTGTCGACCTCAATGTTGAGTTTGATGAGGTTAGAGAAACTATTGGTTTAGTTGAAAGTTCTGCATTGGTGATTGAAAATATTGCATTGAAATCCAACAAGACACATGAGAAGTCTCGTGTTTGTTCTATGCAAGGTGAGAGAAATTCTCATTTGTATACCTCTGATGCTACTGTTGTTGACTACAACCCATTTAATAAAGAGCGAGAAAATCCCATTGAGCAGAATTTGAAATCGGAAGCTACAACAAAAGAAGAGCTAAAAGAAAAAGAAAAGTACTATGGACTTGTGAGGAGACTCACGCACGTCCTGACATCGCTTTTGAATCCACATACTGATTCCAAAGGAATTATGGATCTTGTGAAGTTCCTTAGTCCCAAGCACGTGATACTTGTACATGGAGAGAAGCCTAAAATGGCTACTTTAAAGGAGAGAATTCATTCTGAACTTGGAATCCCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCAACTCCTAATTTCAAGTTTTTGAAAAGAAACTTGAATGATAAGATTGATCCAAGTTGCAAAGCAGGAGTAGGAGGAACTTCAAGCTTGTTTATACGCAAATGCTCGGATCTCCATTTCAAGCATTTGAATAGAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAAAGAAGGAGTCTTGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTATTCTTGGGAGAACAAGAGCATGAGCTATTTTCAAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATCTTGTATTTTGTTGCTGTAGTTGGCTAGTTGCAGATGAAATCCTTGCATGGAAAATCATTTCTATCTTGGAGAAGCATGATCTCGGTTCAACATGA

Protein sequence

MSRPSCDFRIPTIFASHCSLVAFFGYQHSSAMSLPVDYFCIVVHWFSWLTVALPCPSSPFSTAGLSFFPLLVFLGLFCVWMYIRGQGKIGYITGEKTALSLDDPSFAGWDAENSMVEDINYNYMCYSTAKELWDSVTQMFSDLGNQSQVFELNLKLGDIRQVEDQKHYRKIVEDGCIYKFFVDLNVEFDEVRETIGLVESSALVIENIALKSNKTHEKSRVCSMQGERNSHLYTSDATVVDYNPFNKERENPIEQNLKSEATTKEELKEKEKYYGLVRRLTHVLTSLLNPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCKAGVGGTSSLFIRKCSDLHFKHLNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHELFSKLSSELSDRNVQNLVFCCCSWLVADEILAWKIISILEKHDLGST

Homology

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BLAST of ClCG09G016760 vs. NCBI nr
Match: XP_038901170.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X3 [Benincasa hispida])

HSP 1 Score: 381.7 bits (979), Expect = 9.8e-102
Identity = 197/259 (76.06%), Postives = 211/259 (81.47%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLK+RIHSELGIPC+DPANNETVSISST
Sbjct: 390 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKQRIHSELGIPCYDPANNETVSISST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDP-----SCKAGVGGTSSLFIRKCSDLHF 408
           LSVKAEAS MFIQSCSTPNFKFLKRNLN+K+DP     SCKA  GGTS +FIRKCS+ HF
Sbjct: 450 LSVKAEASRMFIQSCSTPNFKFLKRNLNNKVDPNLKDLSCKA--GGTSRVFIRKCSNHHF 509

Query: 409 KHLNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHEL 468
           K+LNRNLD KFDSS SCGPELQVSDDRV EG+LVME GKKTKV+HQDE+LL LGEQEHEL
Sbjct: 510 KYLNRNLDTKFDSSFSCGPELQVSDDRVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEL 569

Query: 469 FSKLSSELSDRNVQNL---------------------------------VFCCCSWLVAD 510
           FSKLSSELSD+NVQNL                                 VFCCCSWL+AD
Sbjct: 570 FSKLSSELSDKNVQNLGEYLQVESFTLSICSKEDCPYRTTNRIENESTIVFCCCSWLIAD 629

[Close]

BLAST of ClCG09G016760 vs. NCBI nr
Match: XP_038901169.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Benincasa hispida])

HSP 1 Score: 365.2 bits (936), Expect = 9.5e-97
Identity = 197/291 (67.70%), Postives = 211/291 (72.51%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLK+RIHSELGIPC+DPANNETVSISST
Sbjct: 376 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKQRIHSELGIPCYDPANNETVSISST 435

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDP-----SCKAGVGGTSSLFIRKCSDLHF 408
           LSVKAEAS MFIQSCSTPNFKFLKRNLN+K+DP     SCKA  GGTS +FIRKCS+ HF
Sbjct: 436 LSVKAEASRMFIQSCSTPNFKFLKRNLNNKVDPNLKDLSCKA--GGTSRVFIRKCSNHHF 495

Query: 409 KHLNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE- 468
           K+LNRNLD KFDSS SCGPELQVSDDRV EG+LVME GKKTKV+HQDE+LL LGEQEHE 
Sbjct: 496 KYLNRNLDTKFDSSFSCGPELQVSDDRVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEV 555

Query: 469 -------------------------------LFSKLSSELSDRNVQNL------------ 510
                                          LFSKLSSELSD+NVQNL            
Sbjct: 556 RFANCRPIYFGNLEETHVMDCLSRKSLWLSQLFSKLSSELSDKNVQNLGEYLQVESFTLS 615

[Close]

BLAST of ClCG09G016760 vs. NCBI nr
Match: XP_038901174.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X6 [Benincasa hispida])

HSP 1 Score: 365.2 bits (936), Expect = 9.5e-97
Identity = 197/291 (67.70%), Postives = 211/291 (72.51%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLK+RIHSELGIPC+DPANNETVSISST
Sbjct: 295 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKQRIHSELGIPCYDPANNETVSISST 354

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDP-----SCKAGVGGTSSLFIRKCSDLHF 408
           LSVKAEAS MFIQSCSTPNFKFLKRNLN+K+DP     SCKA  GGTS +FIRKCS+ HF
Sbjct: 355 LSVKAEASRMFIQSCSTPNFKFLKRNLNNKVDPNLKDLSCKA--GGTSRVFIRKCSNHHF 414

Query: 409 KHLNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE- 468
           K+LNRNLD KFDSS SCGPELQVSDDRV EG+LVME GKKTKV+HQDE+LL LGEQEHE 
Sbjct: 415 KYLNRNLDTKFDSSFSCGPELQVSDDRVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEV 474

Query: 469 -------------------------------LFSKLSSELSDRNVQNL------------ 510
                                          LFSKLSSELSD+NVQNL            
Sbjct: 475 RFANCRPIYFGNLEETHVMDCLSRKSLWLSQLFSKLSSELSDKNVQNLGEYLQVESFTLS 534

[Close]

BLAST of ClCG09G016760 vs. NCBI nr
Match: XP_038901162.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901163.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901164.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901165.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901166.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901167.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901168.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida])

HSP 1 Score: 365.2 bits (936), Expect = 9.5e-97
Identity = 197/291 (67.70%), Postives = 211/291 (72.51%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLK+RIHSELGIPC+DPANNETVSISST
Sbjct: 390 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKQRIHSELGIPCYDPANNETVSISST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDP-----SCKAGVGGTSSLFIRKCSDLHF 408
           LSVKAEAS MFIQSCSTPNFKFLKRNLN+K+DP     SCKA  GGTS +FIRKCS+ HF
Sbjct: 450 LSVKAEASRMFIQSCSTPNFKFLKRNLNNKVDPNLKDLSCKA--GGTSRVFIRKCSNHHF 509

Query: 409 KHLNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE- 468
           K+LNRNLD KFDSS SCGPELQVSDDRV EG+LVME GKKTKV+HQDE+LL LGEQEHE 
Sbjct: 510 KYLNRNLDTKFDSSFSCGPELQVSDDRVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEV 569

Query: 469 -------------------------------LFSKLSSELSDRNVQNL------------ 510
                                          LFSKLSSELSD+NVQNL            
Sbjct: 570 RFANCRPIYFGNLEETHVMDCLSRKSLWLSQLFSKLSSELSDKNVQNLGEYLQVESFTLS 629

[Close]

BLAST of ClCG09G016760 vs. NCBI nr
Match: XP_008459147.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 6.8e-95
Identity = 196/290 (67.59%), Postives = 205/290 (70.69%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISST
Sbjct: 390 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCK---AGVGGTSSLFIRKCSDLHFKH 408
           LS+KAEASSMFIQSCSTPNFKFLKRNL DKIDP  K        TS++ IR+CS+ HFKH
Sbjct: 450 LSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKH 509

Query: 409 LNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE--- 468
           LNRNLDAKFDSSLSCGPELQVSDDRV EG+LVMENGKKTK +HQDELLL LGEQEHE   
Sbjct: 510 LNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRF 569

Query: 469 -----------------------------LFSKLSSELSDRNVQNL-------------- 510
                                        L  KLS+ELSDRNVQNL              
Sbjct: 570 AHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSIC 629

[Close]

BLAST of ClCG09G016760 vs. ExPASy Swiss-Prot
Match: Q8GUU3 (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana OX=3702 GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-33
Identity = 94/269 (34.94%), Postives = 123/269 (45.72%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTD+KGIMDL KFLSPK+V+LVHGEKP M  LKE+I SEL IPC  PAN ETVS +ST
Sbjct: 390 SPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFAST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCKAGVGGTSSLFIRKCSDLHFKHLNR 408
             +KA AS MF++SCS PNFKF                                      
Sbjct: 450 TYIKANASDMFLKSCSNPNFKF-------------------------------------- 509

Query: 409 NLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEH------- 468
                     S   +L+V+D R  +GVLV+E  KK K+VHQDE+   L E+ H       
Sbjct: 510 ----------SNSTQLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHC 569

Query: 469 --------------ELFSKLSSEL----------------------------------SD 503
                         +L  +LS+++                                  S 
Sbjct: 570 CPVKVKGESEDDDVDLIKQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSS 610

[Close]

BLAST of ClCG09G016760 vs. ExPASy Swiss-Prot
Match: Q54YL3 (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=ints11 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-10
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 291 HTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISSTLS 350
           H D+KGI+ L+K  +P++VILVHGEK KM  L ++I  E+G+ C+ PAN  T+ I +  S
Sbjct: 403 HADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMKS 462

Query: 351 VKAEAS-SMFIQSCSTPNFKFLKRNLND 378
           +  + S ++  +     ++++   NLN+
Sbjct: 463 IPIDISLNLLKRQILDYSYQYNNNNLNN 490

[Close]

BLAST of ClCG09G016760 vs. ExPASy Swiss-Prot
Match: Q503E1 (Integrator complex subunit 11 OS=Danio rerio OX=7955 GN=cpsf3l PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-09
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 291 HTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISSTLS 350
           H D+KGIM L++   P++++LVHGE  KM  LK++I  E  I C  PAN ET +I +  S
Sbjct: 392 HADAKGIMQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTIVTNPS 451

Query: 351 VKAEAS 357
           V  + S
Sbjct: 452 VPVDIS 457

[Close]

BLAST of ClCG09G016760 vs. ExPASy Swiss-Prot
Match: Q2YDM2 (Integrator complex subunit 11 OS=Bos taurus OX=9913 GN=INTS11 PE=2 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-09
Identity = 63/219 (28.77%), Postives = 91/219 (41.55%), Query Frame = 0


Query: 291 HTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISSTLS 350
           H D+KGIM LV    P++V+LVHGE  KM  LK++I  E  + C+ PAN ETV++ ++ S
Sbjct: 392 HADAKGIMQLVGQAEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPS 451

Query: 351 VKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCKAG--VGGT----SSLFIRKCSDLHFK 410
           +    S              LKR +   + P  K    + GT     S F    S+   K
Sbjct: 452 IPVGIS-----------LGLLKREMAQGLLPDAKKPRLLHGTLIMKDSNFRLVSSEQALK 511

Query: 411 HLNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHELF 470
            L     A+     +C   L    D  KE  + M      K V +D  +  L +    + 
Sbjct: 512 ELGL---AEHQLRFTCRVHLH---DTRKEQEMAMRVYSHLKSVLKDHCVQHLPDGSVTVE 571

Query: 471 SKLSSELSDRNVQNLVFCCCSWLVADEILAWKIISILEK 504
           S L    +            SW   DE L   + S+L+K
Sbjct: 572 SILVQAAAHSEDPGTKVLLVSWTYQDEELGSYLTSLLKK 593

[Close]

BLAST of ClCG09G016760 vs. ExPASy Swiss-Prot
Match: Q5ZIH0 (Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-09
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 291 HTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISSTLS 350
           H D+KGIM L++   P++V+LVHGE  KM  LK++I  E  + C+ PAN ET +I +  S
Sbjct: 392 HADAKGIMQLIRQAEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNPS 451

Query: 351 VKAEAS 357
           +  + S
Sbjct: 452 IPVDIS 457

[Close]

BLAST of ClCG09G016760 vs. ExPASy TrEMBL
Match: A0A1S3C9L2 (cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=3656 GN=LOC103498350 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 3.3e-95
Identity = 196/290 (67.59%), Postives = 205/290 (70.69%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISST
Sbjct: 390 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCK---AGVGGTSSLFIRKCSDLHFKH 408
           LS+KAEASSMFIQSCSTPNFKFLKRNL DKIDP  K        TS++ IR+CS+ HFKH
Sbjct: 450 LSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKH 509

Query: 409 LNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE--- 468
           LNRNLDAKFDSSLSCGPELQVSDDRV EG+LVMENGKKTK +HQDELLL LGEQEHE   
Sbjct: 510 LNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRF 569

Query: 469 -----------------------------LFSKLSSELSDRNVQNL-------------- 510
                                        L  KLS+ELSDRNVQNL              
Sbjct: 570 AHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSIC 629

[Close]

BLAST of ClCG09G016760 vs. ExPASy TrEMBL
Match: Q6E435 (ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 8.1e-94
Identity = 195/290 (67.24%), Postives = 204/290 (70.34%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISST
Sbjct: 419 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISST 478

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCK---AGVGGTSSLFIRKCSDLHFKH 408
           LS+KAEASSMFIQSCSTPNFKFLKRNL DKIDP  K        TS++ IR+CS+ HFKH
Sbjct: 479 LSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKH 538

Query: 409 LNRNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE--- 468
           LNRNLDAKFDSSLS GPELQVSDDRV EG+LVMENGKKTK +HQDELLL LGEQEHE   
Sbjct: 539 LNRNLDAKFDSSLSGGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRF 598

Query: 469 -----------------------------LFSKLSSELSDRNVQNL-------------- 510
                                        L  KLS+ELSDRNVQNL              
Sbjct: 599 AHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSIC 658

[Close]

BLAST of ClCG09G016760 vs. ExPASy TrEMBL
Match: A0A6J1FTR8 (cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448716 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.6e-92
Identity = 190/287 (66.20%), Postives = 202/287 (70.38%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKM TLKERIHSELGIPCHDPANNETVSISST
Sbjct: 361 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMVTLKERIHSELGIPCHDPANNETVSISST 420

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKID-PSCKAGVGGTSSLFIRKCSDLHFKHLN 408
           LS+KAE+SSMFIQSCSTPNFKFLKRNLNDKI+     +  GGTSS+F R+ S+ H KHLN
Sbjct: 421 LSIKAESSSMFIQSCSTPNFKFLKRNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLN 480

Query: 409 RNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE----- 468
           RNLD KFDSSLSCGPEL+VSDDRV EG+LVMENGKKTKVVHQDELLL LGEQEHE     
Sbjct: 481 RNLDEKFDSSLSCGPELEVSDDRVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFAN 540

Query: 469 ---------------------------LFSKLSSELSDRNVQNL---------------- 510
                                      L SKLSSELSDRNVQN                 
Sbjct: 541 CSPIYFGSLDDTHVMDCISRKSLWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSK 600

[Close]

BLAST of ClCG09G016760 vs. ExPASy TrEMBL
Match: A0A6J1FYI7 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448716 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.6e-92
Identity = 190/287 (66.20%), Postives = 202/287 (70.38%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKM TLKERIHSELGIPCHDPANNETVSISST
Sbjct: 390 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMVTLKERIHSELGIPCHDPANNETVSISST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKID-PSCKAGVGGTSSLFIRKCSDLHFKHLN 408
           LS+KAE+SSMFIQSCSTPNFKFLKRNLNDKI+     +  GGTSS+F R+ S+ H KHLN
Sbjct: 450 LSIKAESSSMFIQSCSTPNFKFLKRNLNDKINSKELSSKEGGTSSMFFRRRSNPHVKHLN 509

Query: 409 RNLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE----- 468
           RNLD KFDSSLSCGPEL+VSDDRV EG+LVMENGKKTKVVHQDELLL LGEQEHE     
Sbjct: 510 RNLDEKFDSSLSCGPELEVSDDRVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFAN 569

Query: 469 ---------------------------LFSKLSSELSDRNVQNL---------------- 510
                                      L SKLSSELSDRNVQN                 
Sbjct: 570 CSPIYFGSLDDTHVMDCISRKSLWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSK 629

[Close]

BLAST of ClCG09G016760 vs. ExPASy TrEMBL
Match: A0A0A0LQW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435430 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 3.8e-91
Identity = 189/287 (65.85%), Postives = 198/287 (68.99%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTDSKGIMDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISST
Sbjct: 390 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCKAGVGGTSSLFIRKCSDLHFKHLNR 408
           LSVKAEASSMFIQSCSTPNFKFLKRNL D            TS++ IR+CS+ HFKHL R
Sbjct: 450 LSVKAEASSMFIQSCSTPNFKFLKRNLIDPDLKDLSYKAERTSNMLIRECSNPHFKHLKR 509

Query: 409 NLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEHE------ 468
           NLDAKFDSSLSCGP LQVSDDRV EG+LVMENGKKTK +HQDELLL LG+QEHE      
Sbjct: 510 NLDAKFDSSLSCGPALQVSDDRVNEGILVMENGKKTKALHQDELLLLLGQQEHEVRFAHC 569

Query: 469 --------------------------LFSKLSSELSDRNVQNL----------------- 510
                                     L  KLS+ELSDRNVQNL                 
Sbjct: 570 RPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKE 629

[Close]

BLAST of ClCG09G016760 vs. TAIR 10
Match: AT2G01730.1 (cleavage and polyadenylation specificity factor 73 kDa subunit-II )

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-34
Identity = 94/269 (34.94%), Postives = 123/269 (45.72%), Query Frame = 0


Query: 289 NPHTDSKGIMDLVKFLSPKHVILVHGEKPKMATLKERIHSELGIPCHDPANNETVSISST 348
           +PHTD+KGIMDL KFLSPK+V+LVHGEKP M  LKE+I SEL IPC  PAN ETVS +ST
Sbjct: 390 SPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFAST 449

Query: 349 LSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDPSCKAGVGGTSSLFIRKCSDLHFKHLNR 408
             +KA AS MF++SCS PNFKF                                      
Sbjct: 450 TYIKANASDMFLKSCSNPNFKF-------------------------------------- 509

Query: 409 NLDAKFDSSLSCGPELQVSDDRVKEGVLVMENGKKTKVVHQDELLLFLGEQEH------- 468
                     S   +L+V+D R  +GVLV+E  KK K+VHQDE+   L E+ H       
Sbjct: 510 ----------SNSTQLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHC 569

Query: 469 --------------ELFSKLSSEL----------------------------------SD 503
                         +L  +LS+++                                  S 
Sbjct: 570 CPVKVKGESEDDDVDLIKQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSS 610

The following BLAST results are available for this feature:

BLAST of ClCG09G016760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901170.1	9.8e-102	76.06	cleavage and polyadenylation specificity factor subunit 3-II isoform X3 [Beninca...	[more]
XP_038901169.1	9.5e-97	67.70	cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Beninca...	[more]
XP_038901174.1	9.5e-97	67.70	cleavage and polyadenylation specificity factor subunit 3-II isoform X6 [Beninca...	[more]
XP_038901162.1	9.5e-97	67.70	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Beninca...	[more]
XP_008459147.1	6.8e-95	67.59	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Cucumis...	[more]

BLAST of ClCG09G016760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GUU3	2.6e-33	34.94	Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal...	[more]
Q54YL3	1.8e-10	37.50	Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=in...	[more]
Q503E1	2.0e-09	45.45	Integrator complex subunit 11 OS=Danio rerio OX=7955 GN=cpsf3l PE=2 SV=1	[more]
Q2YDM2	2.7e-09	28.77	Integrator complex subunit 11 OS=Bos taurus OX=9913 GN=INTS11 PE=2 SV=2	[more]
Q5ZIH0	3.5e-09	43.94	Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1	[more]

BLAST of ClCG09G016760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9L2	3.3e-95	67.59	cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=...	[more]
Q6E435	8.1e-94	67.24	ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=3 SV=1	[more]
A0A6J1FTR8	2.6e-92	66.20	cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucur...	[more]
A0A6J1FYI7	2.6e-92	66.20	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 OS=Cucur...	[more]
A0A0A0LQW3	3.8e-91	65.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G435430 PE=3 SV=1	[more]

BLAST of ClCG09G016760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01730.1	1.9e-34	34.94	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	GENE3D	3.60.15.10		coord: 208..348 e-value: 8.8E-6 score: 27.2
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 283..346
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 291..335 e-value: 8.4E-10 score: 38.5
None	No IPR available	PANTHER	PTHR37610:SF41	SUBFAMILY NOT NAMED	coord: 79..164
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 79..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G016760.2	ClCG09G016760.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016180	snRNA processing
cellular_component	GO:0005634	nucleus