ClCG09G013774 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G013774
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transcription initiation factor TFIID subunit 6
Location	CG_Chr09: 21462579 .. 21464185 (-)
RNA-Seq Expression	ClCG09G013774
Synteny	ClCG09G013774

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCTCTACATGCAGGGTGGACGCATGGTAATCGTGTACCCGGTACACGATTTCCACTGAAATCGTGGACCAGGTCCACGGTTTTGTGAAATCGTGGACTGGGTCCACGATTTCACAACCCTAATTTTGGTATTTCTTTCCCCATCACCCTATTTTTGGAATTATTTTTTAAAAAAACATTATTTTAAAAAAAAATTCGACTTAGAAAATATAGTAAAAAGAGTCTTTGAGCTTTCTTTTAGTCTTGTGCTATGTTACTTTTGCAATCCTAGTGTTTAGGTTGCATGTATGAAATCATTCAAGCTTGACTTGATTAATTTTGCTTGTGGATTGATTCGAAGATCAAGGGTCGATGGGAGCCGCAAACTTTATCCGATCTATGATTTTGCTGATCGTCTAAGTAATCCATCATCTAGCCATTCTTAGGGACTGAGATCATCTTGGGGTGTTTGAGTTTGAGATCTAAAGGTCTTGTTTGTCAACTAGGTTGACGCCTCCACGCCGGCTCCATCGACAACCATGCAAGCTCCGTCGACATCACTACACCAGCTTAGTCGACCACCATGGGACCAAGTTGACATCAACATTTTTTGTCTCTTTTATTTAACTCTCTAACTAAAGAAAAGTTTTTAAAATGGTTTTAACCAAACCGAACCGGTTCGAACCGATTTAGGATGGCCTGGTTTTAAAATTAAAACCGAGATACTTTCGGTTTTGTTGGTTCTAATAGACTAGAAACCAATATGTTCAGATCGGTTCGTGGTTTTGTCAAAAACTGAACCGAACTGCACACCCCTGAGAGATACAATTGGACGCACTTTTGTTCTTGATTGTTTTTTTATTCTTTTGCCTTTACCCCAGTTGTGGTAACCCAAGTTATTTAGTAACCTCGATATCATCTTTCCTATCTACAGTAATTTTACCACCTTCTGATGTCAAAAGTAATGAACAAAAGGATGGGCTGCCAGTTGATATTAAATTACCAGTTAAGCATATACTGTCGAAGGAGCTTCAGGTAATTGACTTGTTATTTGCTTATATAATTCAGTTAAAGTTTAATTGGTTGCTGATTCCCAGGTTTTTATGACATATTTGCAGCTATATTTTGACAAAATCACAGAGTTTGTTGTTAGTAGGTCCAGTTCAGTTCTATTTAAAAAGGCATTAGTGAGTTTAGCTACAGACTCGGAACTTCACGCATTGGTTCCTTATTTTACGTGTTATTGGTGATGAGGTATGTATGTTTGAGCATACAAAATCTACCGATTGCTTTAGAAGCTATGATTTTTTTATTTTAGATTTTTTGTTGTTCTCCCATGATATCAGGTTGCACGTGGACTGGGTGACTATTCCCTCCTTTTTGCTTTAATGCGTGTTGTTTGGAGTCTTCTTCAGAATCCTTACATCCACATAGAACCTTATGTGAGTTGAATTCAACGTATGTGTTATATCATCTTTTTCTAATGGTTGAGTTGAGGTTCATGAATGTCTAAGTCTAGTAGTATTCTAACAACTCATTGATGTTCTTTAGCAGCCAGATCTCTACCATCATCTTGCCCTGCTTTGTCCTCCATGGTTCTGGGTTTCAGCTCAGAGTAACTGA

mRNA sequence

ATGCATGCTCTACATGCAGGGTGGACGCATGGTAATCGTGTACCCGTAATTTTACCACCTTCTGATGTCAAAAGTAATGAACAAAAGGATGGGCTGCCAGTTGATATTAAATTACCAGTTAAGCATATACTGTCGAAGGAGCTTCAGCTATATTTTGACAAAATCACAGAGTTTGTTGTTAGTAGGTCCAGTTCAGTTCTATTTAAAAAGGCATTAGTGAGTTTAGCTACAGACTCGGAACTTCACGCATTGGTTGCACGTGGACTGGGTGACTATTCCCTCCTTTTTGCTTTAATGCGTGTTGTTTGGAGTCTTCTTCAGAATCCTTACATCCACATAGAACCTTATCAGCCAGATCTCTACCATCATCTTGCCCTGCTTTGTCCTCCATGGTTCTGGGTTTCAGCTCAGAGTAACTGA

Coding sequence (CDS)

ATGCATGCTCTACATGCAGGGTGGACGCATGGTAATCGTGTACCCGTAATTTTACCACCTTCTGATGTCAAAAGTAATGAACAAAAGGATGGGCTGCCAGTTGATATTAAATTACCAGTTAAGCATATACTGTCGAAGGAGCTTCAGCTATATTTTGACAAAATCACAGAGTTTGTTGTTAGTAGGTCCAGTTCAGTTCTATTTAAAAAGGCATTAGTGAGTTTAGCTACAGACTCGGAACTTCACGCATTGGTTGCACGTGGACTGGGTGACTATTCCCTCCTTTTTGCTTTAATGCGTGTTGTTTGGAGTCTTCTTCAGAATCCTTACATCCACATAGAACCTTATCAGCCAGATCTCTACCATCATCTTGCCCTGCTTTGTCCTCCATGGTTCTGGGTTTCAGCTCAGAGTAACTGA

Protein sequence

MHALHAGWTHGNRVPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALVARGLGDYSLLFALMRVVWSLLQNPYIHIEPYQPDLYHHLALLCPPWFWVSAQSN

Homology

[Close]

BLAST of ClCG09G013774 vs. NCBI nr
Match: XP_022135619.1 (transcription initiation factor TFIID subunit 6 [Momordica charantia] >XP_022135620.1 transcription initiation factor TFIID subunit 6 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 5.8e-41
Identity = 96/114 (84.21%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITE VVSRSS+VLFKKAL 
Sbjct: 140 VEVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITELVVSRSSTVLFKKALA 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SLATDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. NCBI nr
Match: XP_022930656.1 (transcription initiation factor TFIID subunit 6-like [Cucurbita moschata])

HSP 1 Score: 174.5 bits (441), Expect = 6.5e-40
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALV
Sbjct: 140 VEVILPPSDVKINEQKEGLPVDIKLPVKHILSKELQLYFDKITELVVSRSNSVLFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SL+TDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLSTDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. NCBI nr
Match: XP_023529663.1 (transcription initiation factor TFIID subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 6.5e-40
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALV
Sbjct: 140 VEVILPPSDVKINEQKEGLPVDIKLPVKHILSKELQLYFDKITELVVSRSNSVLFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SL+TDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLSTDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. NCBI nr
Match: XP_022988732.1 (transcription initiation factor TFIID subunit 6-like [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 6.5e-40
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALV
Sbjct: 140 VEVILPPSDVKINEQKEGLPVDIKLPVKHILSKELQLYFDKITELVVSRSNSVLFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SL+TDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLSTDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. NCBI nr
Match: KAG6589132.1 (Transcription initiation factor TFIID subunit 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.5 bits (441), Expect = 6.5e-40
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALV
Sbjct: 140 VEVILPPSDVKINEQKEGLPVDIKLPVKHILSKELQLYFDKITELVVSRSNSVLFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SL+TDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLSTDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. ExPASy Swiss-Prot
Match: Q9MAU3 (Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-26
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 16  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSL 75
           VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSL
Sbjct: 142 VIRAPAETKIHEQKDGPLIDVRLPVKHVLSRELQLYFQKIAELAMSKSNPPLYKEALVSL 201

Query: 76  ATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           A+DS LH L           V+ GL D+ LLF LM +V SLLQNP+IHIEPY
Sbjct: 202 ASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. ExPASy Swiss-Prot
Match: F4HVA6 (Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702 GN=TAF6B PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-16
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 21  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSE 80
           SD+K +E KD       L  + +LSK+LQ+YFDK+TE+ +++S S LF++AL SL  D  
Sbjct: 162 SDLKRSEYKDD-----GLAARQVLSKDLQIYFDKVTEWALTQSGSTLFRQALASLEIDPG 221

Query: 81  LHALV-----------ARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           LH LV            + + +Y +L ALMR+  SLL NP++HIEPY
Sbjct: 222 LHPLVPFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPY 263

[Close]

BLAST of ClCG09G013774 vs. ExPASy Swiss-Prot
Match: O74462 (Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=taf6 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 0


Query: 17  ILPPSDVKSNEQKDGLP----VDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKAL 76
           ++P +   + E ++G+     V+IK  V+H+LSKELQLYF++IT  ++  ++  L   AL
Sbjct: 161 VMPGASTAAKEARNGVTSMDNVEIKPLVRHVLSKELQLYFERITSALLDETNVELRDAAL 220

Query: 77  VSLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPYQPDL 121
            SL  D  LH L           V R LG+  +L  LM + W+LL NP + +EPY   L
Sbjct: 221 SSLRDDPGLHQLLPYFIMFLSDSVTRNLGNLVVLTTLMHMAWALLDNPNLFVEPYVQQL 279

[Close]

BLAST of ClCG09G013774 vs. ExPASy Swiss-Prot
Match: P53040 (Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TAF6 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 29  KDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRS-----SSVLFKKALVSLATDSELHA 88
           K G   ++K  VKH+LSKELQ+YF+K+   + ++S     +  + + AL SL TDS LH 
Sbjct: 204 KPGQNTEVKPLVKHVLSKELQIYFNKVISTLTAKSQADEAAQHMKQAALTSLRTDSGLHQ 263

Query: 89  LV-----------ARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           LV            + L D  LL  ++ +++SLL N  I ++PY
Sbjct: 264 LVPYFIQFIAEQITQNLSDLQLLTTILEMIYSLLSNTSIFLDPY 307

[Close]

BLAST of ClCG09G013774 vs. ExPASy TrEMBL
Match: A0A6J1C1Y6 (transcription initiation factor TFIID subunit 6 OS=Momordica charantia OX=3673 GN=LOC111007529 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41
Identity = 96/114 (84.21%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITE VVSRSS+VLFKKAL 
Sbjct: 140 VEVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITELVVSRSSTVLFKKALA 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SLATDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. ExPASy TrEMBL
Match: A0A6J1JDV8 (transcription initiation factor TFIID subunit 6-like OS=Cucurbita maxima OX=3661 GN=LOC111485983 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.1e-40
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALV
Sbjct: 140 VEVILPPSDVKINEQKEGLPVDIKLPVKHILSKELQLYFDKITELVVSRSNSVLFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SL+TDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLSTDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. ExPASy TrEMBL
Match: A0A6J1ERJ6 (transcription initiation factor TFIID subunit 6-like OS=Cucurbita moschata OX=3662 GN=LOC111437057 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.1e-40
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALV
Sbjct: 140 VEVILPPSDVKINEQKEGLPVDIKLPVKHILSKELQLYFDKITELVVSRSNSVLFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SL+TDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLSTDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. ExPASy TrEMBL
Match: A0A0A0KEI5 (TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G418910 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.3e-40
Identity = 94/114 (82.46%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSD KSNEQ  GLPVDIKLPVKHILSKELQLYFDKITE VVSRSSS+LFKKALV
Sbjct: 140 VEVILPPSDAKSNEQMGGLPVDIKLPVKHILSKELQLYFDKITELVVSRSSSILFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SLATDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. ExPASy TrEMBL
Match: A0A1S4DXQ6 (transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=LOC103491293 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 93/114 (81.58%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 14  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALV 73
           V VILPPSD KSNEQ  GLPVDIKLPVKHILSKELQLYFDKITE VVS+SSS+LFKKALV
Sbjct: 140 VEVILPPSDAKSNEQMGGLPVDIKLPVKHILSKELQLYFDKITELVVSKSSSILFKKALV 199

Query: 74  SLATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           SLATDS LH L           VARGLGDYSLLFALMRVVWSLLQNP+IHIEPY
Sbjct: 200 SLATDSGLHPLVPYFTCFIADEVARGLGDYSLLFALMRVVWSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. TAIR 10
Match: AT1G04950.1 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-27
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 16  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSL 75
           VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSL
Sbjct: 142 VIRAPAETKIHEQKDGPLIDVRLPVKHVLSRELQLYFQKIAELAMSKSNPPLYKEALVSL 201

Query: 76  ATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           A+DS LH L           V+ GL D+ LLF LM +V SLLQNP+IHIEPY
Sbjct: 202 ASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. TAIR 10
Match: AT1G04950.2 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-27
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 16  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSL 75
           VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSL
Sbjct: 142 VIRAPAETKIHEQKDGPLIDVRLPVKHVLSRELQLYFQKIAELAMSKSNPPLYKEALVSL 201

Query: 76  ATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           A+DS LH L           V+ GL D+ LLF LM +V SLLQNP+IHIEPY
Sbjct: 202 ASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. TAIR 10
Match: AT1G04950.3 (TATA BOX ASSOCIATED FACTOR II 59 )

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-27
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 16  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSL 75
           VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSL
Sbjct: 142 VIRAPAETKIHEQKDGPLIDVRLPVKHVLSRELQLYFQKIAELAMSKSNPPLYKEALVSL 201

Query: 76  ATDSELHAL-----------VARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           A+DS LH L           V+ GL D+ LLF LM +V SLLQNP+IHIEPY
Sbjct: 202 ASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPY 253

[Close]

BLAST of ClCG09G013774 vs. TAIR 10
Match: AT1G54360.1 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-17
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 21  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSE 80
           SD+K +E KD       L  + +LSK+LQ+YFDK+TE+ +++S S LF++AL SL  D  
Sbjct: 139 SDLKRSEYKDD-----GLAARQVLSKDLQIYFDKVTEWALTQSGSTLFRQALASLEIDPG 198

Query: 81  LHALV-----------ARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           LH LV            + + +Y +L ALMR+  SLL NP++HIEPY
Sbjct: 199 LHPLVPFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPY 240

[Close]

BLAST of ClCG09G013774 vs. TAIR 10
Match: AT1G54360.2 (TBP-ASSOCIATED FACTOR 6B )

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-17
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 21  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSE 80
           SD+K +E KD       L  + +LSK+LQ+YFDK+TE+ +++S S LF++AL SL  D  
Sbjct: 162 SDLKRSEYKDD-----GLAARQVLSKDLQIYFDKVTEWALTQSGSTLFRQALASLEIDPG 221

Query: 81  LHALV-----------ARGLGDYSLLFALMRVVWSLLQNPYIHIEPY 117
           LH LV            + + +Y +L ALMR+  SLL NP++HIEPY
Sbjct: 222 LHPLVPFFTSFIAEEIVKNMDNYPILLALMRLARSLLHNPHVHIEPY 263

The following BLAST results are available for this feature:

BLAST of ClCG09G013774 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135619.1	5.8e-41	84.21	transcription initiation factor TFIID subunit 6 [Momordica charantia] >XP_022135...	[more]
XP_022930656.1	6.5e-40	82.46	transcription initiation factor TFIID subunit 6-like [Cucurbita moschata]	[more]
XP_023529663.1	6.5e-40	82.46	transcription initiation factor TFIID subunit 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022988732.1	6.5e-40	82.46	transcription initiation factor TFIID subunit 6-like [Cucurbita maxima]	[more]
KAG6589132.1	6.5e-40	82.46	Transcription initiation factor TFIID subunit 6, partial [Cucurbita argyrosperma...	[more]

BLAST of ClCG09G013774 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAU3	4.2e-26	56.25	Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 ...	[more]
F4HVA6	5.2e-16	43.93	Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana OX=3702...	[more]
O74462	3.5e-12	36.97	Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (st...	[more]
P53040	1.0e-08	36.54	Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (str...	[more]

BLAST of ClCG09G013774 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1Y6	2.8e-41	84.21	transcription initiation factor TFIID subunit 6 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JDV8	3.1e-40	82.46	transcription initiation factor TFIID subunit 6-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1ERJ6	3.1e-40	82.46	transcription initiation factor TFIID subunit 6-like OS=Cucurbita moschata OX=36...	[more]
A0A0A0KEI5	5.3e-40	82.46	TAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G418910 PE=3 SV...	[more]
A0A1S4DXQ6	1.2e-39	81.58	transcription initiation factor TFIID subunit 6-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of ClCG09G013774 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04950.1	3.0e-27	56.25	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.2	3.0e-27	56.25	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G04950.3	3.0e-27	56.25	TATA BOX ASSOCIATED FACTOR II 59	[more]
AT1G54360.1	3.7e-17	43.93	TBP-ASSOCIATED FACTOR 6B	[more]
AT1G54360.2	3.7e-17	43.93	TBP-ASSOCIATED FACTOR 6B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.25.40.770		coord: 40..129 e-value: 1.0E-17 score: 66.3
None	No IPR available	PANTHER	PTHR10221:SF13	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 13..120
None	No IPR available	CDD	cd08050	TAF6C	coord: 41..116 e-value: 1.77909E-23 score: 88.8541
IPR037796	Transcription initiation factor TFIID subunit 6	PANTHER	PTHR10221	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	coord: 13..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G013774.1	ClCG09G013774.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0046695	SLIK (SAGA-like) complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity