Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCAAACTCTGGTACAATACGAATTTCCATGCTTCGATCCAGACTGCTCCTTTAAGGTTGTTTTTGGGCAAGATCCTCCCCCTTTGTTGGGTTTAGAAAATTATGATACGACAAACGGCATATTGGAACAACTCATGGAACGCGACCGATTGTTGATGGCATTGAAAGAAAATTCGCTGATGGCTCAGAATAGAATGAAAAAGTTTGCAGCCTTGAATCGAAGGGAGCTTGAATTTGAAGAAGGTGATTATGTCTTTCTCAATCTCTGTCCATATCGCTAGCTCTCCTTAGCTTGAAAGTGTTGTGAGAAGCTCGCTCCCAAGTTCTTTGGTCCTTATAAAATTCTCCAACGAATTGGGGCTGTCACTTGCCGCCTAGATCTACCGATGGAGTTCGCCATCCACCCTATTTACCACGTTTCACAGCTTAAGCGGGCCATTGGAGATCACGTCCTGGTTCAGCGGAATCCTCGTGTTTTAGATGATTTTGAATGGGTTATTACCCCGGCCAAAGTGTTAGCAGTGCGATGGAATGAGGTTGAAGCGAAATGGGAGGCCCTGATCGCTTGGCACGGGCAAGCGGAGTGTGATGCCATTTGGGAATCAGTCCCTCGCATGCAATGCCAGTTCTCGGATTTTCACCTTGAGGACAAGGTGGCTTCAAAAGGAGGGGTATTGTTAGGCCCCCGATGTTGA
mRNA sequence
ATGGGCCAAACTCTGGTACAATACGAATTTCCATGCTTCGATCCAGACTGCTCCTTTAAGGTTGTTTTTGGGCAAGATCCTCCCCCTTTGTTGGGTTTAGAAAATTATGATACGACAAACGGCATATTGGAACAACTCATGGAACGCGACCGATTGTTGATGGCATTGAAAGAAAATTCGCTGATGGCTCAGAATAGAATGAAAAAGTTTGCAGCCTTGAATCGAAGGGAGCTTGAATTTGAAGAAGATCTACCGATGGAGTTCGCCATCCACCCTATTTACCACGTTTCACAGCTTAAGCGGGCCATTGGAGATCACGTCCTGGTTCAGCGGAATCCTCGTGTTTTAGATGATTTTGAATGGGTTATTACCCCGGCCAAAGTGTTAGCAGTGCGATGGAATGAGGTTGAAGCGAAATGGGAGGCCCTGATCGCTTGGCACGGGCAAGCGGAGTGTGATGCCATTTGGGAATCAGTCCCTCGCATGCAATGCCAGTTCTCGGATTTTCACCTTGAGGACAAGGTGGCTTCAAAAGGAGGGGTATTGTTAGGCCCCCGATGTTGA
Coding sequence (CDS)
ATGGGCCAAACTCTGGTACAATACGAATTTCCATGCTTCGATCCAGACTGCTCCTTTAAGGTTGTTTTTGGGCAAGATCCTCCCCCTTTGTTGGGTTTAGAAAATTATGATACGACAAACGGCATATTGGAACAACTCATGGAACGCGACCGATTGTTGATGGCATTGAAAGAAAATTCGCTGATGGCTCAGAATAGAATGAAAAAGTTTGCAGCCTTGAATCGAAGGGAGCTTGAATTTGAAGAAGATCTACCGATGGAGTTCGCCATCCACCCTATTTACCACGTTTCACAGCTTAAGCGGGCCATTGGAGATCACGTCCTGGTTCAGCGGAATCCTCGTGTTTTAGATGATTTTGAATGGGTTATTACCCCGGCCAAAGTGTTAGCAGTGCGATGGAATGAGGTTGAAGCGAAATGGGAGGCCCTGATCGCTTGGCACGGGCAAGCGGAGTGTGATGCCATTTGGGAATCAGTCCCTCGCATGCAATGCCAGTTCTCGGATTTTCACCTTGAGGACAAGGTGGCTTCAAAAGGAGGGGTATTGTTAGGCCCCCGATGTTGA
Protein sequence
MGQTLVQYEFPCFDPDCSFKVVFGQDPPPLLGLENYDTTNGILEQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLPMEFAIHPIYHVSQLKRAIGDHVLVQRNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKVASKGGVLLGPRC
Homology
BLAST of ClCG09G013125 vs. NCBI nr
Match:
TYK05078.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 138.7 bits (348), Expect = 5.3e-29
Identity = 77/167 (46.11%), Postives = 103/167 (61.68%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPL+ + +T N L +QL +RD L ALKE+ +AQ RMKK A RRE
Sbjct: 817 FQAVYGRLPPPLIYYGDMETPNSTLDQQLKDRDITLGALKEHLKLAQERMKKHADNKRRE 876
Query: 79 LEFEE--------DLPMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKV 138
+EF+E +LP AIHP++HVSQLK+ +G VQ NP + + EW+ P +V
Sbjct: 877 VEFQEGDLVAYKIELPAAAAIHPVFHVSQLKKVVGRGETVQPLNPYMNANHEWITRPEEV 936
Query: 139 LAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV 176
+ R N +WEALI+W G +A WES M+ QF DFHLEDKV
Sbjct: 937 YSYRKNPATKEWEALISWKGLPPHEATWESCTDMKYQFPDFHLEDKV 983
BLAST of ClCG09G013125 vs. NCBI nr
Match:
KAA0047079.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 138.7 bits (348), Expect = 5.3e-29
Identity = 77/167 (46.11%), Postives = 103/167 (61.68%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPL+ + +T N L +QL +RD L ALKE+ +AQ RMKK A RRE
Sbjct: 817 FQAVYGRLPPPLIYYGDMETPNSTLDQQLKDRDITLGALKEHLKLAQERMKKHADNKRRE 876
Query: 79 LEFEE--------DLPMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKV 138
+EF+E +LP AIHP++HVSQLK+ +G VQ NP + + EW+ P +V
Sbjct: 877 VEFQEGDLVAYKIELPAAAAIHPVFHVSQLKKVVGRGETVQPLNPYMNANHEWITRPEEV 936
Query: 139 LAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV 176
+ R N +WEALI+W G +A WES M+ QF DFHLEDKV
Sbjct: 937 YSYRKNPATKEWEALISWKGLPPHEATWESCTDMKYQFPDFHLEDKV 983
BLAST of ClCG09G013125 vs. NCBI nr
Match:
KAA0040538.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27
Identity = 83/203 (40.89%), Postives = 104/203 (51.23%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
FK V+G+ PPPLL + TTN +E L ERD L ALKEN +AQNRMKKFA L RRE
Sbjct: 147 FKAVYGRSPPPLLSYGDKKTTNNEVELMLKERDSALNALKENLTLAQNRMKKFADLKRRE 206
Query: 79 LE--------------------------------------------FEEDLPMEFAIHPI 138
L+ + DLP E AIH +
Sbjct: 207 LKLKVGEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLPPEAAIHNV 266
Query: 139 YHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAEC 176
+H+SQLK +G +VQ ++P + ++FE + P VL +RWN+ E LI W G E
Sbjct: 267 FHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVLGIRWNKELGANEWLIKWQGLPES 326
BLAST of ClCG09G013125 vs. NCBI nr
Match:
TYK04121.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 133.3 bits (334), Expect = 2.2e-27
Identity = 82/204 (40.20%), Postives = 105/204 (51.47%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGILEQLM-ERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPLL + TTN +E L+ ERD L ALKEN +AQNRMKKFA L RRE
Sbjct: 339 FEAVYGRSPPPLLSYGDKKTTNNEVEVLLKERDSALSALKENLTLAQNRMKKFADLKRRE 398
Query: 79 LE---------------------------------------------FEEDLPMEFAIHP 138
L+ + DLP E AIH
Sbjct: 399 LKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLPPEAAIHN 458
Query: 139 IYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAE 176
++H+SQLK +G +VQ ++P + ++FE + P VL +RWN+ E LI W G E
Sbjct: 459 VFHISQLKPKLGAQQVVQHQHPMLTENFELQLQPENVLGIRWNKELGANEWLIKWQGLQE 518
BLAST of ClCG09G013125 vs. NCBI nr
Match:
TYK08087.1 (disease resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 132.9 bits (333), Expect = 2.9e-27
Identity = 81/204 (39.71%), Postives = 105/204 (51.47%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPLL + TTN +E L ERD L ALKEN +AQNRMKKFA L RRE
Sbjct: 143 FEAVYGRSPPPLLSYGDKKTTNNEVELMLKERDSALNALKENLTLAQNRMKKFADLKRRE 202
Query: 79 LE---------------------------------------------FEEDLPMEFAIHP 138
L+ ++ DLP E AIH
Sbjct: 203 LKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYQLDLPPEAAIHN 262
Query: 139 IYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAE 176
++H+SQLK +G +VQ ++P + ++FE + P VL +RWN+ E L+ W G E
Sbjct: 263 VFHISQLKPKLGAQQVVQHQHPMLTENFELQLQPENVLGIRWNKELGANEWLVKWQGLQE 322
BLAST of ClCG09G013125 vs. ExPASy TrEMBL
Match:
A0A5A7U0S0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00370 PE=4 SV=1)
HSP 1 Score: 138.7 bits (348), Expect = 2.6e-29
Identity = 77/167 (46.11%), Postives = 103/167 (61.68%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPL+ + +T N L +QL +RD L ALKE+ +AQ RMKK A RRE
Sbjct: 817 FQAVYGRLPPPLIYYGDMETPNSTLDQQLKDRDITLGALKEHLKLAQERMKKHADNKRRE 876
Query: 79 LEFEE--------DLPMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKV 138
+EF+E +LP AIHP++HVSQLK+ +G VQ NP + + EW+ P +V
Sbjct: 877 VEFQEGDLVAYKIELPAAAAIHPVFHVSQLKKVVGRGETVQPLNPYMNANHEWITRPEEV 936
Query: 139 LAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV 176
+ R N +WEALI+W G +A WES M+ QF DFHLEDKV
Sbjct: 937 YSYRKNPATKEWEALISWKGLPPHEATWESCTDMKYQFPDFHLEDKV 983
BLAST of ClCG09G013125 vs. ExPASy TrEMBL
Match:
A0A5D3C1D4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00530 PE=4 SV=1)
HSP 1 Score: 138.7 bits (348), Expect = 2.6e-29
Identity = 77/167 (46.11%), Postives = 103/167 (61.68%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPL+ + +T N L +QL +RD L ALKE+ +AQ RMKK A RRE
Sbjct: 817 FQAVYGRLPPPLIYYGDMETPNSTLDQQLKDRDITLGALKEHLKLAQERMKKHADNKRRE 876
Query: 79 LEFEE--------DLPMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKV 138
+EF+E +LP AIHP++HVSQLK+ +G VQ NP + + EW+ P +V
Sbjct: 877 VEFQEGDLVAYKIELPAAAAIHPVFHVSQLKKVVGRGETVQPLNPYMNANHEWITRPEEV 936
Query: 139 LAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV 176
+ R N +WEALI+W G +A WES M+ QF DFHLEDKV
Sbjct: 937 YSYRKNPATKEWEALISWKGLPPHEATWESCTDMKYQFPDFHLEDKV 983
BLAST of ClCG09G013125 vs. ExPASy TrEMBL
Match:
A0A5A7TCB1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00920 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 6.3e-28
Identity = 83/203 (40.89%), Postives = 104/203 (51.23%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
FK V+G+ PPPLL + TTN +E L ERD L ALKEN +AQNRMKKFA L RRE
Sbjct: 147 FKAVYGRSPPPLLSYGDKKTTNNEVELMLKERDSALNALKENLTLAQNRMKKFADLKRRE 206
Query: 79 LE--------------------------------------------FEEDLPMEFAIHPI 138
L+ + DLP E AIH +
Sbjct: 207 LKLKVGEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLPPEAAIHNV 266
Query: 139 YHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAEC 176
+H+SQLK +G +VQ ++P + ++FE + P VL +RWN+ E LI W G E
Sbjct: 267 FHISQLKPKLGAQQVVQHQHPMLTENFELQLWPENVLGIRWNKELGANEWLIKWQGLPES 326
BLAST of ClCG09G013125 vs. ExPASy TrEMBL
Match:
A0A5D3BWN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00600 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 82/204 (40.20%), Postives = 105/204 (51.47%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGILEQLM-ERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPLL + TTN +E L+ ERD L ALKEN +AQNRMKKFA L RRE
Sbjct: 339 FEAVYGRSPPPLLSYGDKKTTNNEVEVLLKERDSALSALKENLTLAQNRMKKFADLKRRE 398
Query: 79 LE---------------------------------------------FEEDLPMEFAIHP 138
L+ + DLP E AIH
Sbjct: 399 LKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLPPEAAIHN 458
Query: 139 IYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAE 176
++H+SQLK +G +VQ ++P + ++FE + P VL +RWN+ E LI W G E
Sbjct: 459 VFHISQLKPKLGAQQVVQHQHPMLTENFELQLQPENVLGIRWNKELGANEWLIKWQGLQE 518
BLAST of ClCG09G013125 vs. ExPASy TrEMBL
Match:
A0A5D3C7Z4 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002460 PE=4 SV=1)
HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 81/204 (39.71%), Postives = 105/204 (51.47%), Query Frame = 0
Query: 19 FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRE 78
F+ V+G+ PPPLL + TTN +E L ERD L ALKEN +AQNRMKKFA L RRE
Sbjct: 143 FEAVYGRSPPPLLSYGDKKTTNNEVELMLKERDSALNALKENLTLAQNRMKKFADLKRRE 202
Query: 79 LE---------------------------------------------FEEDLPMEFAIHP 138
L+ ++ DLP E AIH
Sbjct: 203 LKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYQLDLPPEAAIHN 262
Query: 139 IYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAE 176
++H+SQLK +G +VQ ++P + ++FE + P VL +RWN+ E L+ W G E
Sbjct: 263 VFHISQLKPKLGAQQVVQHQHPMLTENFELQLQPENVLGIRWNKELGANEWLVKWQGLQE 322
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK05078.1 | 5.3e-29 | 46.11 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0047079.1 | 5.3e-29 | 46.11 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0040538.1 | 1.3e-27 | 40.89 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
| TYK04121.1 | 2.2e-27 | 40.20 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
| TYK08087.1 | 2.9e-27 | 39.71 | disease resistance protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U0S0 | 2.6e-29 | 46.11 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3C1D4 | 2.6e-29 | 46.11 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7TCB1 | 6.3e-28 | 40.89 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| A0A5D3BWN1 | 1.1e-27 | 40.20 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5D3C7Z4 | 1.4e-27 | 39.71 | Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
