ClCG09G012483 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G012483
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCCHC-type domain-containing protein
LocationCG_Chr09: 14534183 .. 14534533 (-)
RNA-Seq ExpressionClCG09G012483
SyntenyClCG09G012483
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGACATTTAGGGGAGGCCGTAGGGAGGTTCTTGGAGGTGGATTGTAATCAAGACAATGTTTCCTGGGGTGACAGTCTCCGTATCAAGATTTTAGTGGATATCTCTAAGCCTCTACGCAAGGGAATTTGGATTGATCCTGGCGGTAATCAAGGAAACACTTGGATTCAATTTAAATATGAAAGATTACCGAACTTTTGCTATAGTTGTGATAGGATTGGACACACAATTAAAGACTCTTTGCTAGACCAAAAAGGTCTGGAAGATGAGAACAGGAATTGGCAGTTTGATAGTTGGCTTAGATTTCAAGGCCCGAATATTCGGAGAAGAAGGAGAGATCCTCCCTAG

mRNA sequence

ATGTCTAGACATTTAGGGGAGGCCGTAGGGAGGTTCTTGGAGGTGGATTGTAATCAAGACAATGTTTCCTGGGGTGACAGTCTCCGTATCAAGATTTTAGTGGATATCTCTAAGCCTCTACGCAAGGGAATTTGGATTGATCCTGGCGGTAATCAAGGAAACACTTGGATTCAATTTAAATATGAAAGATTACCGAACTTTTGCTATAGTTGTGATAGGATTGGACACACAATTAAAGACTCTTTGCTAGACCAAAAAGGTCTGGAAGATGAGAACAGGAATTGGCAGTTTGATAGTTGGCTTAGATTTCAAGGCCCGAATATTCGGAGAAGAAGGAGAGATCCTCCCTAG

Coding sequence (CDS)

ATGTCTAGACATTTAGGGGAGGCCGTAGGGAGGTTCTTGGAGGTGGATTGTAATCAAGACAATGTTTCCTGGGGTGACAGTCTCCGTATCAAGATTTTAGTGGATATCTCTAAGCCTCTACGCAAGGGAATTTGGATTGATCCTGGCGGTAATCAAGGAAACACTTGGATTCAATTTAAATATGAAAGATTACCGAACTTTTGCTATAGTTGTGATAGGATTGGACACACAATTAAAGACTCTTTGCTAGACCAAAAAGGTCTGGAAGATGAGAACAGGAATTGGCAGTTTGATAGTTGGCTTAGATTTCAAGGCCCGAATATTCGGAGAAGAAGGAGAGATCCTCCCTAG

Protein sequence

MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSWLRFQGPNIRRRRRDPP
Homology
BLAST of ClCG09G012483 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-22
Identity = 51/106 (48.11%), Postives = 70/106 (66.04%), Query Frame = 0

Query: 1   MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFK 60
           M+  LG A+G F++VDCN+   SWG SLRI++L+DI+KPLR+GI I+  G  G  WI  +
Sbjct: 144 MAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQ 203

Query: 61  YERLPNFCYSCDRIGHTIKDSLLDQKGLEDENR-NWQFDSWLRFQG 106
           YERLP+FCY C  IGH+  D        +D++R   ++  WLRF G
Sbjct: 204 YERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVG 249

BLAST of ClCG09G012483 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-18
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 1   MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFK 60
           M+  LG A+G F E DC+  N  WG +LR+++++DISKPLR+GI ++  G  G  WI  +
Sbjct: 145 MAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQ 204

Query: 61  YERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSWLRFQG 106
           YERLP+FCY C               GL    +  Q+ SWLR+QG
Sbjct: 205 YERLPDFCYHC---------------GLSSSRKKHQYGSWLRYQG 234

BLAST of ClCG09G012483 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0

Query: 1   MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFK 60
           M+  LG A+G F +V+ N +N  WG  LR+++  D+ KPL +GI ++  G  G  WI  +
Sbjct: 145 MATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQ 204

Query: 61  YERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSWLRFQG 106
           YERLP+F Y C R+ H +KD       ++  ++N Q+  WLRFQG
Sbjct: 205 YERLPDFRYHCGRLDHILKD--CSDCCVDSVSKNLQYGPWLRFQG 247

BLAST of ClCG09G012483 vs. NCBI nr
Match: XP_042958115.1 (uncharacterized protein LOC122293643 [Carya illinoinensis])

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-16
Identity = 39/91 (42.86%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 5   LGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERL 64
           +G ++G   E+D  +D V+WG+ ++I+IL+D++KPL +G  I+  GN G+ W++F YERL
Sbjct: 124 IGNSIGVVEEIDVEKDEVAWGEFIKIRILLDVTKPLLRGKCINL-GNHGSCWVRFTYERL 183

Query: 65  PNFCYSCDRIGHTIKDSLL---DQKGLEDEN 93
           P FCY C R+GH+ KD  +   DQ   +++N
Sbjct: 184 PTFCYGCGRLGHSHKDCSIWKNDQGACKEDN 213

BLAST of ClCG09G012483 vs. NCBI nr
Match: XP_024642377.1 (uncharacterized protein LOC112422874 [Medicago truncatula])

HSP 1 Score: 94.7 bits (234), Expect = 5.4e-16
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 0

Query: 1   MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFK 60
           M+R LG+ VG+FLEVD    N+  G S+RIK+ +D+  PL++GI +     + + WI FK
Sbjct: 127 MARKLGDLVGKFLEVDQRDTNI-MGKSIRIKVDIDLRNPLKRGIVLK--YQKRSLWIFFK 186

Query: 61  YERLPNFCYSCDRIGHTIK----DSLLDQKGLED-ENRNWQFDSWLR 103
           YERLPNFCY C RIGH +K    ++  D +G  D E ++  + SW+R
Sbjct: 187 YERLPNFCYKCGRIGHQMKECEEETGQDGEGYTDVEEQDQAYGSWMR 230

BLAST of ClCG09G012483 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 51/106 (48.11%), Postives = 70/106 (66.04%), Query Frame = 0

Query: 1   MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFK 60
           M+  LG A+G F++VDCN+   SWG SLRI++L+DI+KPLR+GI I+  G  G  WI  +
Sbjct: 144 MAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQ 203

Query: 61  YERLPNFCYSCDRIGHTIKDSLLDQKGLEDENR-NWQFDSWLRFQG 106
           YERLP+FCY C  IGH+  D        +D++R   ++  WLRF G
Sbjct: 204 YERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVG 249

BLAST of ClCG09G012483 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 1   MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFK 60
           M+  LG A+G F E DC+  N  WG +LR+++++DISKPLR+GI ++  G  G  WI  +
Sbjct: 145 MAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQ 204

Query: 61  YERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSWLRFQG 106
           YERLP+FCY C               GL    +  Q+ SWLR+QG
Sbjct: 205 YERLPDFCYHC---------------GLSSSRKKHQYGSWLRYQG 234

BLAST of ClCG09G012483 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-18
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0

Query: 1   MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFK 60
           M+  LG A+G F +V+ N +N  WG  LR+++  D+ KPL +GI ++  G  G  WI  +
Sbjct: 145 MATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQ 204

Query: 61  YERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSWLRFQG 106
           YERLP+F Y C R+ H +KD       ++  ++N Q+  WLRFQG
Sbjct: 205 YERLPDFRYHCGRLDHILKD--CSDCCVDSVSKNLQYGPWLRFQG 247

BLAST of ClCG09G012483 vs. ExPASy TrEMBL
Match: A0A803NE34 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 6   GEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLP 65
           GE++G FLE D + D + WG+ +R+KIL DI+KPLR+GI ID  GN    WI  KYERL 
Sbjct: 21  GESLGGFLEHDDDDDPLGWGEFMRVKILHDINKPLRRGIKID-AGNSSEKWIGSKYERLR 80

Query: 66  NFCYSCDRIGHTIKDSLLDQKGLEDENRN---WQFDSWL 102
           +FCY C R+GHT +D  +  +G ED +     +Q+  WL
Sbjct: 81  DFCYYCGRLGHTDRDCHI--QGEEDRDSGSTIYQYGPWL 116

BLAST of ClCG09G012483 vs. ExPASy TrEMBL
Match: A0A803MV91 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.6e-16
Identity = 41/99 (41.41%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 5   LGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERL 64
           +GE +G F+E+D + D + WG+++RIK+L+DI+KPLR+G+++  G NQ    I  KYERL
Sbjct: 21  VGEFLGGFMEMD-DSDPLGWGENMRIKVLIDINKPLRRGLFLAMGNNQSRC-IDIKYERL 80

Query: 65  PNFCYSCDRIGHTIKDSLLDQKGLEDENRN-WQFDSWLR 103
            +FC+ C R+ HT ++    ++  +DE +  +Q+  WLR
Sbjct: 81  ADFCFFCGRLDHTERECQQKEQAKDDEKKMVYQYGPWLR 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.12.3e-2248.11uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022158377.14.4e-1842.86uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022132681.15.8e-1840.95uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_042958115.14.2e-1642.86uncharacterized protein LOC122293643 [Carya illinoinensis][more]
XP_024642377.15.4e-1644.86uncharacterized protein LOC112422874 [Medicago truncatula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU551.1e-2248.11uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DX302.2e-1842.86uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1BSZ12.8e-1840.95uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A803NE341.4e-1748.48Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A803MV912.6e-1641.41Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 34..79
e-value: 5.7E-15
score: 54.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G012483.1ClCG09G012483.1mRNA