ClCG09G011976 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G011976
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Auxin responsive SAUR protein
Location	CG_Chr09: 12768971 .. 12769396 (+)
RNA-Seq Expression	ClCG09G011976
Synteny	ClCG09G011976

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCTTGGTCCTCCCTTGCTACATCATGAAGAGACGACAACGGAGATCAAGCCGATCGCGTCTCGGCTACCACCGTCTCAACAAATCCGACCTCGGCCGCATCGATGGAGCGGAGAGTAGTCTAGTGAAGGTTGTGGCGGGAAAAGAAAAGAGAGAATTCTTAGTAGACCCTATTGTGTTGGAAGAAAATCCGTTTCGAATTTTGATCGAAAAGGGAGGAGATGACGATGAAGACGAAGATGAGGATGGAGATGAAGATGAAGATGAAGAAGATGAAAATGGAAAAAGGAAAAGGGTTATATTTGTTGATGTGGATGCTATTTTGTTCGAGCACTTGCTGTGGCTCATGTACAACGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

mRNA sequence

ATGAATTGCTTGGTCCTCCCTTGCTACATCATGAAGAGACGACAACGGAGATCAAGCCGATCGCGTCTCGGCTACCACCGTCTCAACAAATCCGACCTCGGCCGCATCGATGGAGCGGAGAGTAGTCTAGTGAAGGTTGTGGCGGGAAAAGAAAAGAGAGAATTCTTAGTAGACCCTATTGTGTTGGAAGAAAATCCGTTTCGAATTTTGATCGAAAAGGGAGGAGATGACGATGAAGACGAAGATGAGGATGGAGATGAAGATGAAGATGAAGAAGATGAAAATGGAAAAAGGAAAAGGGTTATATTTGTTGATGTGGATGCTATTTTGTTCGAGCACTTGCTGTGGCTCATGTACAACGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Coding sequence (CDS)

ATGAATTGCTTGGTCCTCCCTTGCTACATCATGAAGAGACGACAACGGAGATCAAGCCGATCGCGTCTCGGCTACCACCGTCTCAACAAATCCGACCTCGGCCGCATCGATGGAGCGGAGAGTAGTCTAGTGAAGGTTGTGGCGGGAAAAGAAAAGAGAGAATTCTTAGTAGACCCTATTGTGTTGGAAGAAAATCCGTTTCGAATTTTGATCGAAAAGGGAGGAGATGACGATGAAGACGAAGATGAGGATGGAGATGAAGATGAAGATGAAGAAGATGAAAATGGAAAAAGGAAAAGGGTTATATTTGTTGATGTGGATGCTATTTTGTTCGAGCACTTGCTGTGGCTCATGTACAACGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Protein sequence

MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNVEEILDFYAQDF

Homology

[Close]

BLAST of ClCG09G011976 vs. NCBI nr
Match: XP_038888374.1 (uncharacterized protein LOC120078224 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 7.7e-57
Identity = 118/141 (83.69%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPI 60
           M+CLVLPCY+MKRR+RRS+R RLGYHRLNKS++GR+DGAESSLVKVVAGKEKREFLVDP 
Sbjct: 1   MDCLVLPCYVMKRRRRRSTRPRLGYHRLNKSNVGRLDGAESSLVKVVAGKEKREFLVDPF 60

Query: 61  VLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYN 120
           VLEENPFRILIEKGGDD+EDE+ED           GKRKRVIFVDVD+ILFEHLLWLMYN
Sbjct: 61  VLEENPFRILIEKGGDDNEDEEED-----------GKRKRVIFVDVDSILFEHLLWLMYN 120

Query: 121 DCSSLFKLNVEEILDFYAQDF 142
           DCSSLFKLNVEEILDFYAQDF
Sbjct: 121 DCSSLFKLNVEEILDFYAQDF 130

[Close]

BLAST of ClCG09G011976 vs. NCBI nr
Match: XP_008465964.1 (PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  LGYHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLLWLM 120
           P VLEENPFR LIEKGGD D+DED DGD        +GK+KRVIFVDVDAILFEHLLWLM
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGD--------HGKKKRVIFVDVDAILFEHLLWLM 144

Query: 121 YNDCSSLFKLNVEEILDFYAQDF 142
           YNDCSSLFKLNVEEILDFYAQDF
Sbjct: 145 YNDCSSLFKLNVEEILDFYAQDF 159

[Close]

BLAST of ClCG09G011976 vs. NCBI nr
Match: KAA0038583.1 (Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin responsive SAUR protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  LGYHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLLWLM 120
           P VLEENPFR LIEKGGD D+DED DGD        +GK+KRVIFVDVDAILFEHLLWLM
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGD--------HGKKKRVIFVDVDAILFEHLLWLM 120

Query: 121 YNDCSSLFKLNVEEILDFYAQDF 142
           YNDCSSLFKLNVEEILDFYAQDF
Sbjct: 121 YNDCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of ClCG09G011976 vs. NCBI nr
Match: XP_011652654.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical protein Csa_001277 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 3.7e-51
Identity = 116/146 (79.45%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MNCLVLPCYIMK-RRQRRSSRSRLGYHRLNKSDLGRI----DGAESSLVKVVAGKEKREF 60
           M CLVLPCY+MK RR+RRS++  LGYHRLNKS+ GR     D AESSLVKVVAGKE+REF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLL 120
           LVDP VLEENPFRILIEKGGDDDEDED D           GKRKRVIFVDVDAILFEHLL
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDEDGD-----------GKRKRVIFVDVDAILFEHLL 120

Query: 121 WLMYNDCSSLFKLNVEEILDFYAQDF 142
           WLMYNDCSSLFKLNVEEILDFYAQDF
Sbjct: 121 WLMYNDCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of ClCG09G011976 vs. NCBI nr
Match: XP_022931160.1 (uncharacterized protein LOC111437423 [Cucurbita moschata])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-30
Identity = 84/146 (57.53%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 1   MNCLV--LPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVD 60
           M+CLV  LPCY+MKRR+RR++  RL Y RLNKS+         SLV+VV GKE+ EFLVD
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTA-PRLPYRRLNKSE---------SLVRVVVGKERTEFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKR---VIFVDVDAILFEHLL 120
           P VLEENPFR+L+EKG                 E++ GKR+R   +IFVDVDAILFEH L
Sbjct: 61  PFVLEENPFRVLMEKG---------------RFEEKQGKRRREEHIIFVDVDAILFEHFL 120

Query: 121 WLMYNDCSSLFKLNVEEILDFYAQDF 142
           WL+YND SSL  LN++EIL FY+QDF
Sbjct: 121 WLIYNDSSSLLTLNLDEILHFYSQDF 121

[Close]

BLAST of ClCG09G011976 vs. ExPASy TrEMBL
Match: A0A5D3E5S1 (Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004380 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.3e-53
Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  LGYHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLLWLM 120
           P VLEENPFR LIEKGGD D+DED DGD        +GK+KRVIFVDVDAILFEHLLWLM
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGD--------HGKKKRVIFVDVDAILFEHLLWLM 120

Query: 121 YNDCSSLFKLNVEEILDFYAQDF 142
           YNDCSSLFKLNVEEILDFYAQDF
Sbjct: 121 YNDCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of ClCG09G011976 vs. ExPASy TrEMBL
Match: A0A1S3CQ48 (uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.3e-53
Identity = 114/143 (79.72%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  LGYHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLLWLM 120
           P VLEENPFR LIEKGGD D+DED DGD        +GK+KRVIFVDVDAILFEHLLWLM
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGD--------HGKKKRVIFVDVDAILFEHLLWLM 144

Query: 121 YNDCSSLFKLNVEEILDFYAQDF 142
           YNDCSSLFKLNVEEILDFYAQDF
Sbjct: 145 YNDCSSLFKLNVEEILDFYAQDF 159

[Close]

BLAST of ClCG09G011976 vs. ExPASy TrEMBL
Match: A0A0A0LK59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51
Identity = 116/146 (79.45%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MNCLVLPCYIMK-RRQRRSSRSRLGYHRLNKSDLGRI----DGAESSLVKVVAGKEKREF 60
           M CLVLPCY+MK RR+RRS++  LGYHRLNKS+ GR     D AESSLVKVVAGKE+REF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLL 120
           LVDP VLEENPFRILIEKGGDDDEDED D           GKRKRVIFVDVDAILFEHLL
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDEDGD-----------GKRKRVIFVDVDAILFEHLL 120

Query: 121 WLMYNDCSSLFKLNVEEILDFYAQDF 142
           WLMYNDCSSLFKLNVEEILDFYAQDF
Sbjct: 121 WLMYNDCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of ClCG09G011976 vs. ExPASy TrEMBL
Match: A0A6J1EYP5 (uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC111437423 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.8e-31
Identity = 84/146 (57.53%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 1   MNCLV--LPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVD 60
           M+CLV  LPCY+MKRR+RR++  RL Y RLNKS+         SLV+VV GKE+ EFLVD
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTA-PRLPYRRLNKSE---------SLVRVVVGKERTEFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKR---VIFVDVDAILFEHLL 120
           P VLEENPFR+L+EKG                 E++ GKR+R   +IFVDVDAILFEH L
Sbjct: 61  PFVLEENPFRVLMEKG---------------RFEEKQGKRRREEHIIFVDVDAILFEHFL 120

Query: 121 WLMYNDCSSLFKLNVEEILDFYAQDF 142
           WL+YND SSL  LN++EIL FY+QDF
Sbjct: 121 WLIYNDSSSLLTLNLDEILHFYSQDF 121

[Close]

BLAST of ClCG09G011976 vs. ExPASy TrEMBL
Match: B9S1G2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0864910 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.0e-30
Identity = 83/143 (58.04%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPI 60
           M+CLVLP  I+  R+R ++ SRLGY  L +   G +D      VKVV GKEKREFLVDP 
Sbjct: 1   MDCLVLPVSIL--RKRYTAGSRLGYRPLTEDGFGGLDRP----VKVVVGKEKREFLVDPF 60

Query: 61  VLEENPFRILIE--KGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVDVDAILFEHLLWLM 120
           VLEE+PFR+LIE  K G  D + D+             K++R IFVDVDAILFEH+LWLM
Sbjct: 61  VLEESPFRVLIETVKKGSYDHNFDD------------MKKRRTIFVDVDAILFEHMLWLM 120

Query: 121 YNDCSSLFKLNVEEILDFYAQDF 142
           YNDCSSLF+LN+EEI+DFYAQD+
Sbjct: 121 YNDCSSLFQLNLEEIIDFYAQDY 125

[Close]

BLAST of ClCG09G011976 vs. TAIR 10
Match: AT2G35290.1 (unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-18
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLGYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPI 60
           M CL+ P   ++R     SR R  Y  L        +  E  +++VV GKEK+EF+V+P 
Sbjct: 1   MGCLISPVMKLRRLSSADSR-RFAYRNL-------AENMEDPVIRVVVGKEKKEFMVEPY 60

Query: 61  VLEENPFRILIEKGGDDDEDEDEDGDEDEDEEDENGKRKRVIFVD-VDAILFEHLLWLMY 120
           VLEE PFR+LI             G   +  ++   +  RV+++D VD+ILFEHLLWL+ 
Sbjct: 61  VLEEYPFRVLI-------------GSAKDRAKNRLNRTGRVVWLDHVDSILFEHLLWLLR 120

Query: 121 NDCSSLFKLNVEEILDFYAQD 141
           ND S+   L+V EI++FYAQD
Sbjct: 121 NDASTFSDLDVLEIIEFYAQD 120

The following BLAST results are available for this feature:

BLAST of ClCG09G011976 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888374.1	7.7e-57	83.69	uncharacterized protein LOC120078224 [Benincasa hispida]	[more]
XP_008465964.1	1.5e-52	79.72	PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo]	[more]
KAA0038583.1	1.5e-52	79.72	Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin respo...	[more]
XP_011652654.1	3.7e-51	79.45	auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical prote...	[more]
XP_022931160.1	1.6e-30	57.53	uncharacterized protein LOC111437423 [Cucurbita moschata]	[more]

BLAST of ClCG09G011976 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG09G011976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5S1	7.3e-53	79.72	Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CQ48	7.3e-53	79.72	uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=...	[more]
A0A0A0LK59	1.8e-51	79.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1	[more]
A0A6J1EYP5	7.8e-31	57.53	uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC1114374...	[more]
B9S1G2	3.0e-30	58.04	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0864910 PE=4 SV=1	[more]

BLAST of ClCG09G011976 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35290.1	1.5e-18	40.43	unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	PANTHER	PTHR35296:SF3	EXPRESSED PROTEIN	coord: 1..140
None	No IPR available	PANTHER	PTHR35296	EXPRESSED PROTEIN	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G011976.1	ClCG09G011976.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane