ClCG09G011570 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G011570
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Nuclear cap-binding protein subunit 2
Location	CG_Chr09: 11521159 .. 11530056 (+)
RNA-Seq Expression	ClCG09G011570
Synteny	ClCG09G011570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACCACTCCCTTTCGGCTTCAGGTATGCAAGTTTAAGCTTGTTTGAATTCCATCCAACAAGGGTTCATATCTTTTTTGGGCATAATTCAATGGGTAAAAATACTTAAACTCCTATGGAACTCTTCTAAGTGTTGTAGCTTAGTTTCGAAACTTTAGAACCTTTCTTTTTATAGCAATGGGTTGGGTTATACTTTGTCCACAATCTAAGACAAATACAAGGTTAGGGAAATCTCCACTGCTTTTAGGTTCGTCAGGAACCACTTACATGATCGGTATTCTCACTGTCAACAATTGCATACGTCAATGGGTATAGTTGATTATTACTGTCCATGGCAACACCAACTATCATTGTTCCTTTGTACTTATGCTTTAGATGATTACCATCCACATTTATTATAGATCGACAACTCTTAAACCCTTTAAACTTGGTCCTAATGCCATAAACATGTATATGAAGTATTGCGATTCTTCAAGCTCAATCTTAAATACGATTCTAGGATTTTCCATCTTTAAAGCCTCTGCATACACATGCAATACTTCATATGATTCCTCTTGCGTCCTCCTTGCAAGAGCAAAATAAATTTCTTTCACACGCTATGTCTTGTCATAACTAACCAATGATGCATGTGTTGACCTGCCTGTGGTCATGATTCGGGACTTCAATCGAGCATGTGTTATCGGACGTGCATTTTGTGATCTTGAAAATATCACAACCCTCTTTATTTTTATTGCTCGAACAACCCACTTACAAGTCAAGTGTATACATTGAACATTGTACAATTTTTTGTTTGATTTCTTAACTTGCAACTCAAAATTGTTCCTAATGACAACATTGCTAACCTCATATTCACATCATTCTTACAAAAGAAAATTTGGCCTATTTCGATACCATTGTTTTCTTGTCATTTAAAAAATGTCAAGAATTATTTATTAAAATAAAAAGAAAATAACTTTTTTAATTAAATAAAAAGTACACGCGAAAGGCTTATGCGCGACTTCACCAGTACACACGAAAACCTTAAAGCGCGATCTGATCCTTCCCAGCACGCGAAGAAAACCCTCTGCCGCCGCCTCCATCCACCCCTCTGCCGCCGCCTCCATCCACCACGCTGCCGCCGCCTCCGTCCACCTCCGCCGCCCTCTGCCGCCGAAACGCAAAGGTAAAGCAGGTTGGTTCCCGTTTGGATATATTGAAAGAAGAGAACGGGTACTTGCAAGTAAGGTTGCTGAGGTGTTTTGATCTTTTGGCTTGAATTTATTCGGTTGGGAATATTGTATGTGTATTTTCTTTTCATTCGATGTACTCAGATGATGGCTCATGTTCTTGCTCATAGAATGCTCATTCTAGCAATTTTGAGATTTTGTAATATAGAGACCAACAATTTTAACTATTGATATCTGTGGGCTGGGTTCGAAATTTTCTTTTTATTGTTTTTTACTCCTTTTTATTCCCATTCTTTCTTTTTATTGTTTTTTGACCCCTTTTAGGAGAGGTTCTCCTTGGCTTTCTGTTTTGACACGGTTGTATTGTTCTCCAGTCTAGTCAATGAAGAACCTTATTGACTTCAATTCTTTCTCGAATTAAGTTATGCATTTTTTCTACTTTTTCAGGTTTGGCTGTTGTGATCAATATGATATATTTGTTCTTGTGCCAATATGAGCATAGGTTTGTGATTAAGACATTGAAATTTTCACACTTTCTACCTTTGTTCTAGAAAAAACTTTACCTTTTGTCACTCATCAAAAGTTAAGTTCAGGATTTGAAATTAAGTATTCATTGATTCTAATTCTAGAAAGGTTCTTAGTCCGTCTTTATTAGTTTGAAGCATTCCAATAAGGTAGGCTTTTGGGTATACTCTATGCTCTGCTATAGTTAGTGGAATAGTTCTTTCAAAATGAATCTGGTTTGTTCAAAGTATTGGAGCTTAACACATAGATGTGAGATTACATCCTGGCAAACAATGAAAATGTGGATGCTATATTCAATTTCCTTTTGTAGAGCTTTTATTAAGTGGTGTGGTACTATATAGATTGTTGATAATGATTTTTAGTTTTCTTTAAAAGATTAATGTAGATGGGCTTTCTTTCGTCATCTTGAAGAACCTAAAGGTTGTTCTATTGAAGTTAGTTCCCTTTATGGTTTCTAGATTTGACGTTTGAACATTTTTATGGAATTGTTTGTCCTAAGGGTAGTGGATTAGGGATTGGGTTTAACCCCATTTTGACAAATTTAACATATAATTCCTTGTTTGCAATTGAGTTTGATATCTTTATGTTAGGACCCAAGGTAGTAACGGCTACCTTTGTCCCAAATTGGTTAGAATGGGATGATCAATGTGGTACTTAAGTGGCTTGGCTCTAACACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCGTAAGTACCTAACAATGGTATCAAAGCTGGTTGTTGACGTTCCTAGTGGATTCGATGGAGGGTTTTGATCGGGTGTGGCCAAGTGAAGTATTGTCGGAATAGCCACCAGGACGTCGGCTTTTTGAGGATGGGGTATTGTTAGGAATCAAGGTAGTATGGGCTACCTTTGTCCCATATTGGTTAGAATGAGATGACCAATGTGGTACTTAAGTGGTTTGGCTCTCCCACCTCAATAGCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACTTAACAATGGACGAAGGTAGCCCATACTACCTTGGTTCCTAACACTTTAGCAATTACTTTGATCCACCAGAAAAACCATGTAGGTATTGATATCAATTCAATGGCTTTTGTCGCTTATTCAATATGGAAATGTGATATTAAGAGAGGGAAAAAGACTGATGTTTGGATTAATTATGATTCTGTTACTTTGATCTTATCACATTCGGAAGGATATCATCTCATAATTATCTATGACTGTTTCTGTCTCTAGCACGACCACTTGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTAGTGGAAGTATTCCTCTTTGGATAATAGGTACTGTGATTGGTATTCCTGTGATCGGTTTAGTCAATATTTTCTTTTATGGTTCATATTCTGGCTTAGGTTCATCTCTGTACTAATCGGGTGAACTGAGTTGTAGACATGAAAGCGTAAGAACTCAACAGGATCCCCCTCGAATAAGGAAAAGAAGGTTCTGATAAACCGAGAAAAATTGAAACCAAAAATAGGGATCTTTGACGAATGGGATCAAATCGGGTGTGGCCGAGTGAAGTATTTTCAGAGTAGCCATTGGGATGTTGGCTTTCCGAGGATGGGGTATTGTTGGGAACCAAGGTAGTATGGGCTACTTTTGTCCCACATTAGTTAGAATGGGATGATCAATGTGATACTTAAGTGGCTTGGCTCTCCCATCTCAATAGCTAGCTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAATGGACAAAAGTAGCCCATACTACCTTGGTTCCTAACACTTTAGCAATTACTTTGATCCACCTGAAAAACCATGCAGGTATTGATATCAATTCAATGGCTTTTGTTGCTTATTCAATATGGAAATGTGATATTAAGAGAGGGAAAAGGACTGATGTTTGGATTAATTATGATTCTGTTACTTTGATCTTGAGTATTACTTTCACGGGGTATATATGAGAATAATAAAACTATATTGCAGAAACCATGATGTAAACTTTAGGTGGGGTTTCGCATTAATTTGGTTCTTAATAGAAAATTTTGTGTTCAAGATAACTTAATGCAAAAATATAGTTGAAGAGCTGTAATTTGTCCTACTTTCTTTAAGTTTGGGATATTGTAGAACTAGAAATGACTAGTTGTATGATGATTGTAAAGTTGGTTTTGATAGATGTTATGAGGATGATAGTTTTGTTCATATGGGGTGGATTGTAGTTCTGATCATAGTAGTTTGGAAATGTAATTCTTTGAAATTGTTCATATGTGGTTGACTGTTGGAATTATGTTCATTATATTCTTTTTGGAAATGTTCATATCGGGTTGTCCATATTCTTATAACTTAGAAAATCCTTCATGGAGTTGTAAGTTATATATTGACAATGTTGAAGAAGTGATATTTTGTTAAAGGTATTGGAGGAAATTGTAATTGATAAGACTGAAAATATGTGTGGTTGTTTATTTGGTTTGATGAATCTTTATCCTTCATATATATATATTATTAAATGATTGTTGGACCAAAATACAGGAGCAATTTATAGGTAAACATCTATATTACAATTTTTCTTTTAAAAAAATCACAAATAGACTTGACAAGTTAAATGTGTCAAGATATAGACACATTTGACAAGTAGAAACTGCTAAGAAGTTTTGCACTTGACACTTTATCCTTGTCATGAACACCCATATTCTTGACATTTTTCACATATCAAGTAAATTATATATTGATATTTTTAACATATCAAGTAAAACATATCTTGACATTTTTTCCTTGTCAAGAATGCCATATTCTCGACATTTCAAACATGTCAAGTGTCACTGTTCTTGACGTTTTTACCATGTTGAGAACCCCCATATTCTTGACACTTGATGTCTTGGTGTTTTTTAAAAACGTCAGGAATAGTGACACTTGACATTGGAAAAAGGTCAAGAAACACTATTTTTCTTGTAGTGATGGGCTGATATCATACCAATGTGAGCACTTTTCCAACACAATTTTAAGTCTGTTTTGGTGAGTTTTAAGTACTAAAGTTAAGTTTAGGTCTTTTCAAACATAGTTAAAGTGATTTATATCGGTTTCTAATCCTTAGAATCTTGCCAAATCCAAGCTATTTTAGTTGAAAATTTGTTGGATCAAAACAAGATTTCAGATCATTTTCGATTTTCAAATGCCATGTTCTTTATTCATTCCAAACACCATAAATGATTTCAAATCCATTTTGATTTGAAATCCTTTAAAATTTAGTGGTTGCAAACACGGGTAAACCTTTGGTTTGTTGAGTGTCTGCTTGTTGCTCTAGCTAAAGTGGGGTTTTTATTTTTGGTGCAGATTTTGTTGTTCTAGGGTTCATGGCTTCGCTATTCAAGGTAAATTGCTTTTTTACTTCCATTTTAGATAACCAAGATCTTTTCATGCAGTTAGTATTTCATTACATAGTTAAATTCGTTTTTTGCTCCACTAGGTCAATTGGGTGTGTCAAAGACATCTTTACGAATTCTATTCGGACATGTTTGAAGGAAAAGTTTTATTTCGATTTATTTTATTTGCGAGACTCATTTTGATGTCAAATGTTGCCTTTTTAGTTTGGGCGTTGGGGAGTAGGCCGCTGGTGTTTCGAATTCTGTTAGACATGTTGTGGTGGTAGGCTAGAGCACCTGTTCAATAACTTCAACCTAGTCCCCCCTTTGATCGATATTATAGTTTTGTCACCATTATTTTGAGTTAAGTGAGTTTGGTGAGATTTCAACCTTTGACCTCCTGATTGGTTGAAGATACATGTCTAAATCTAGGTTAAGTTGGAAATTTTGTGACCATTATGGCAAAGGATATTCTGATTATTGTTATCATTGATCGTAGTATCTTTATGTTAAAACGTTGAGAACCATTCAAAGCTCCAATTACTTCGAAAGAAAATCTATTGAAAGGAATAATGTCACATATAAGTAGTTAGATGATAGATAATTTTTCCATGATTTCTATCTAAGACAAGATTCCTGCTTTCAACTTTATCATTTGTAGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTGTAAGACTTTATAGTTCCTAACCAGTAGAACATCTTAATATACTTTAAGTTTATATCAATATTCAACCGTACAATTTTCTAACATGGGAATTAATTACTAAACTTATTTATTTATGTCTCTGCTGCTCGAAACTATCTGTGATTGATAGAATACAAGAGAGTTAGGGAAGGGGGAGAGTAGTCGCTCGAAAGTACCCATATGTGTGATAGGCCTACAATAACCAAGGTGTATATTTGTAGACATGATAAAGAGAAGAGGGGCAATATGGGGTAAAGGAAATAGGTAATGTGGGGACCCTAGGAATATTTGTTAGTTAGGGGTCCTAAGAGAGGGTATGTAAACGGTTGGGTTGTGAGGAGAGTGGTATCTTTTTGGCTTGTAAACATTCTCTTGAAGAGATCTTGGAAAGGAAGAGGAGCTCTCGAATTCTCCCTTTGCTGTTGATAAATAACTTGTGGCTGAGGCCTTATCAATTTGGTATCGGAGCAATGTATTTTGGGTATGATGGGAAAAATGGAAAGTAGAGTGATAGTTGTGGAAGAGAAGTTACTGGAAATGGGGGAGAGACAAGTGACGATGGAAACGAAGATGGAAGAACAATTCAATGAGGCCAAAGTAGCAAGAGATGAACTCAGAGAAAGGTTTGATGAATTATTTGAGCAGATGAGATTGATTTTGTCGAAGATGGATGCGAGTTGTGAGGGCAAGACATCATCATTGGAGAGAATGATTTCTGATAAAGGAAAAAAACCCGTGGGCTCAAGTGCGACAAAATCAAAACAAAACGGTAATCATTAGAAAGAGGAAGAAAGCATTCACGCACTTGGGAATGAGGTCCCTTTGTTCGACATGAGATTGAGGAAACTTGAGGGGCCAATTTTAAAAGGGGAAGAAGATGGAAACCTCAATGGCTGGCTGCATCGCGTAGAATGACATTTTGTCGTCAATCGACTATCGGAGAAGATAAGCTGGACGCCACTGTGCTGTGCTTGGAGGGTGAGACTCCATATTGGTATCAATGGGAGGAGTTCTAGAAGTCGATCAGTAACTGGAAACGATTCAGGGAGCTATCGTTGGAGAGGTTTCAGCCGTAGAATGAGGCAGGCAGATATGCGAAACTAATGCGGTTGCAACAAGAGACAACTGTGAGGGATTACCACTAGCGATTTGGACGATTTTCAGCTAGGTTGAAGGAGATCGGCGATAAGGCGCTGGAGAGTAAGTTCGTTTGCGGCTTGAAGGAAGAGATTCAGATTGAGATGCGCAAACTCAACCCTGTGGGCCTGAAAGCCAAGATGACCATGGCCCAACTCATTGAAGACGATCAAGCGATCCAACAAAAAGTCAATAGCACTGGTGGAGGCGGCCCAACATTGAGGACAACGTCGGGTACAAGCGGGTGGGGCTCCAGCAGGTCGGGTGTGAGCGGATCAAATGTGCGCTCGTTTACATTTAGCCCTAATCGGACCTCATTTGCGTCTTCGACATCCATTACTCCGGTTCATGAGACGATGGTGAAATCCAACTACAATGCACCGTCTCAGAGACTAATTAAGGAAGAGATGGGGGCCAAGAAGGAAAAGGGTTTATGCTTCAAATGTGATGGGAAGTTTAGCTTTGGCCATCGCTACAAAAAGGAGCTGCAATTTATGTTTGTCCAAGGAGAAGACATGTCACCTGATGAAGATACTGAAGAGGTAGGGCCAAAAATTGCCGATCAAGGAGGTGAAGGAATGCCCGAAAGCATGACAATCAAGATGGCGAATTTGTCACTAAATCCAATGGCTAGGTTTCATTCTCCAAAGACGGTGAAGGTGATGGGGGTTATCCAAGGTCGTGAAGTGGTGGTGTTAATTGAATGGGGGGGGGGCCACCCACAATTTTATTGCAGAAGAACTTGTTAATGAGCTGAAATTGACGATCTACCAACCAAAGGGTATGGAGTTGTGCCCACTGGAGGGTTTGTCCGAGCATCGAGAGTTTGCAAAAATGTGCTTCTGTCTATTTCAGATCTCTCTATAATCTAGGATTTCTTTCCATTACCATTAGGGAGTGTCGATGTCATTTTCGGGGCAGTGTGGCTGGAAACGTTAGGAAAAATAGAGATCGACTACCATTCATCGGTGATGAAGTTCAATGTGGGGGAATGGTTGGTACAATTGAGAAGGTGATTGCAGCTTGGTAAGAACTCAGATATCTCTTAAGTCTATGGCAAAGTCCTTTAGTTGCAGAGACCAGGGGATGTTAGTTGAGCTCAGTATGCTGGAATCCGAAGGAGGGGTTGAGCTTAATACTAAGTTCAAAAGGGAGTGGAAAAACTACCAATGACTATTTAGGGAGTACTCCGAAAGTATGAAGGGGTGTTTACATCCAGCAGCATCCTACCACTGGTGAGATCTCTTGATCATTCAATTGAATTGCAACCAGGAGTAGGGCTGGTTAACGTGAGACCGTACCGGTATTTGCAGTTCCAAAAAGATGAAATCGAAAGGTTGGTGAGGGAGATGTTGATGGTGAGAATTGTACAGCTGAGTGGAAAAACTACCGACAACTATTCAGGGAGTACTTTGAAAGTATGAAGGGGTGTTTACATCCCGCAGTGTCCTACCACTGGTGAGATCTCTTGATCATTCAATTGAATTGCAACCAGGAGTAGGGCTGGTGAACATGAGACCGTACCGGTATCCGCAGTTCCAAAAAGATGAAATCGAAAGGTTGGTGAGGGAAATGTTGATGGCGGGAATTGTACAGCTGAGTAGGAGTCCATTCTCCAATCCCGTTCTCTTAGTAAAGAAGAAAAATGGGAGCTGGAGATTCTGTGTTAATTATCGTGCTATTAATAATGTGACGATACCTGACAAATTTCCCATACTAATGGTTGACGAGTTGTTGGATGAATTATTCGGAGCAACTATTTTTTCCAAGATCGATTTGAAGTCTGGCTACCATCAAGTTTGA

mRNA sequence

ATGTTAACCACTCCCTTTCGGCTTCAGCGCGATCTGATCCTTCCCAGCACGCGAAGAAAACCCTCTGCCGCCGCCTCCATCCACCCCTCTGCCGCCGCCTCCATCCACCACGCTGCCGCCGCCTCCGTCCACCTCCGCCGCCCTCTGCCGCCGAAACGCAAAGGTAAAGCAGATTTTGTTGTTCTAGGGTTCATGGCTTCGCTATTCAAGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTAGTGATAGTTGTGGAAGAGAAGTTACTGGAAATGGGGGAGAGACAAGTGACGATGGAAACGAAGATGGAAGAACAATTCAATGAGGCCAAAGTAGCAAGAGATGAACTCAGAGAAAGGTTTGATGAATTATTTGAGCAGATGAGATTGATTTTGTCGAAGATGGATGCGAGTTGTGAGGGCAAGACATCATCATTGGAGAGAATGATTTCTGATAAAGGAAAAAAACCCGTGGGCTCAAGTGCGACAAAATCAAAACAAAACGCTAGGTTGAAGGAGATCGGCGATAAGGCGCTGGAGAGTAAGTTCGTTTGCGGCTTGAAGGAAGAGATTCAGATTGAGATGCGCAAACTCAACCCTGTGGGCCTGAAAGCCAAGATGACCATGGCCCAACTCATTGAAGACGATCAAGCGATCCAACAAAAAGTCAATAGCACTGGTGGAGGCGGCCCAACATTGAGGACAACGTCGGGTACAAGCGGGTGGGGCTCCAGCAGGTCGGGTGTGAGCGGATCAAATGTGCGCTCGTTTACATTTAGCCCTAATCGGACCTCATTTGCGTCTTCGACATCCATTACTCCGGTTCATGAGACGATGGTGAAATCCAACTACAATGCACCGTCTCAGAGACTAATTAAGGAAGAGATGGGGGCCAAGAAGGAAAAGGGTTTATGCTTCAAATGTGATGGGAAGTTTAGCTTTGGCCATCGCTACAAAAAGGAGCTGCAATTTATGTTTGTCCAAGGAGAAGACATGTCACCTGATGAAGATACTGAAGAGGTAGGGCCAAAAATTGCCGATCAAGGAGGTGAAGGAATGCCCGAAAGCATGACAATCAAGATGGCGAATTTGTCACTAAATCCAATGGCTAGGTTTCATTCTCCAAAGACGGTGAAGGTGATGGGGGTTATCCAAGGATTTCTTTCCATTACCATTAGGGAGTGTCGATGTCATTTTCGGGGCAGTGTGGCTGGAAACGTTAGGAAAAATAGAGATCGACTACCATTCATCGGTGATGAAGTTCAATGTGGGGGAATGGTTGGTACAATTGAGAAGGTGATTGCAGCTTGCAGCATCCTACCACTGGTGAGATCTCTTGATCATTCAATTGAATTGCAACCAGGAGTAGGGCTGGTTAACGTGAGACCGTACCGGTATTTGCAGTTCCAAAAAGATGAAATCGAAAGTGTCCTACCACTGGTGAGATCTCTTGATCATTCAATTGAATTGCAACCAGGAGTAGGGCTGGTGAACATGAGACCGTACCGGTATCCGCAGTTCCAAAAAGATGAAATCGAAAGGTTGGTGAGGGAAATGTTGATGGCGGGAATTGTACAGCTGAGTAGGAGTCCATTCTCCAATCCCGTTCTCTTAGTAAAGAAGAAAAATGGGAGCTGGAGATTCTGTGTTAATTATCGTGCTATTAATAATGTGACGATACCTGACAAATTTCCCATACTAATGGTTGACGAGTTGTTGGATGAATTATTCGGAGCAACTATTTTTTCCAAGATCGATTTGAAGTCTGGCTACCATCAAGTTTGA

Coding sequence (CDS)

ATGTTAACCACTCCCTTTCGGCTTCAGCGCGATCTGATCCTTCCCAGCACGCGAAGAAAACCCTCTGCCGCCGCCTCCATCCACCCCTCTGCCGCCGCCTCCATCCACCACGCTGCCGCCGCCTCCGTCCACCTCCGCCGCCCTCTGCCGCCGAAACGCAAAGGTAAAGCAGATTTTGTTGTTCTAGGGTTCATGGCTTCGCTATTCAAGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTAGTGATAGTTGTGGAAGAGAAGTTACTGGAAATGGGGGAGAGACAAGTGACGATGGAAACGAAGATGGAAGAACAATTCAATGAGGCCAAAGTAGCAAGAGATGAACTCAGAGAAAGGTTTGATGAATTATTTGAGCAGATGAGATTGATTTTGTCGAAGATGGATGCGAGTTGTGAGGGCAAGACATCATCATTGGAGAGAATGATTTCTGATAAAGGAAAAAAACCCGTGGGCTCAAGTGCGACAAAATCAAAACAAAACGCTAGGTTGAAGGAGATCGGCGATAAGGCGCTGGAGAGTAAGTTCGTTTGCGGCTTGAAGGAAGAGATTCAGATTGAGATGCGCAAACTCAACCCTGTGGGCCTGAAAGCCAAGATGACCATGGCCCAACTCATTGAAGACGATCAAGCGATCCAACAAAAAGTCAATAGCACTGGTGGAGGCGGCCCAACATTGAGGACAACGTCGGGTACAAGCGGGTGGGGCTCCAGCAGGTCGGGTGTGAGCGGATCAAATGTGCGCTCGTTTACATTTAGCCCTAATCGGACCTCATTTGCGTCTTCGACATCCATTACTCCGGTTCATGAGACGATGGTGAAATCCAACTACAATGCACCGTCTCAGAGACTAATTAAGGAAGAGATGGGGGCCAAGAAGGAAAAGGGTTTATGCTTCAAATGTGATGGGAAGTTTAGCTTTGGCCATCGCTACAAAAAGGAGCTGCAATTTATGTTTGTCCAAGGAGAAGACATGTCACCTGATGAAGATACTGAAGAGGTAGGGCCAAAAATTGCCGATCAAGGAGGTGAAGGAATGCCCGAAAGCATGACAATCAAGATGGCGAATTTGTCACTAAATCCAATGGCTAGGTTTCATTCTCCAAAGACGGTGAAGGTGATGGGGGTTATCCAAGGATTTCTTTCCATTACCATTAGGGAGTGTCGATGTCATTTTCGGGGCAGTGTGGCTGGAAACGTTAGGAAAAATAGAGATCGACTACCATTCATCGGTGATGAAGTTCAATGTGGGGGAATGGTTGGTACAATTGAGAAGGTGATTGCAGCTTGCAGCATCCTACCACTGGTGAGATCTCTTGATCATTCAATTGAATTGCAACCAGGAGTAGGGCTGGTTAACGTGAGACCGTACCGGTATTTGCAGTTCCAAAAAGATGAAATCGAAAGTGTCCTACCACTGGTGAGATCTCTTGATCATTCAATTGAATTGCAACCAGGAGTAGGGCTGGTGAACATGAGACCGTACCGGTATCCGCAGTTCCAAAAAGATGAAATCGAAAGGTTGGTGAGGGAAATGTTGATGGCGGGAATTGTACAGCTGAGTAGGAGTCCATTCTCCAATCCCGTTCTCTTAGTAAAGAAGAAAAATGGGAGCTGGAGATTCTGTGTTAATTATCGTGCTATTAATAATGTGACGATACCTGACAAATTTCCCATACTAATGGTTGACGAGTTGTTGGATGAATTATTCGGAGCAACTATTTTTTCCAAGATCGATTTGAAGTCTGGCTACCATCAAGTTTGA

Protein sequence

MLTTPFRLQRDLILPSTRRKPSAAASIHPSAAASIHHAAAASVHLRRPLPPKRKGKADFVVLGFMASLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLVIVVEEKLLEMGERQVTMETKMEEQFNEAKVARDELRERFDELFEQMRLILSKMDASCEGKTSSLERMISDKGKKPVGSSATKSKQNARLKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIEDDQAIQQKVNSTGGGGPTLRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAPSQRLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSPDEDTEEVGPKIADQGGEGMPESMTIKMANLSLNPMARFHSPKTVKVMGVIQGFLSITIRECRCHFRGSVAGNVRKNRDRLPFIGDEVQCGGMVGTIEKVIAACSILPLVRSLDHSIELQPGVGLVNVRPYRYLQFQKDEIESVLPLVRSLDHSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDKFPILMVDELLDELFGATIFSKIDLKSGYHQV

Homology

[Close]

BLAST of ClCG09G011570 vs. NCBI nr
Match: XP_022848903.1 (uncharacterized protein LOC111371244 [Olea europaea var. sylvestris])

HSP 1 Score: 230.7 bits (587), Expect = 3.6e-56
Identity = 174/511 (34.05%), Postives = 249/511 (48.73%), Query Frame = 0


Query: 233 ARLKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIED-DQAIQQKVNSTG 292
           A L  + +  LE  F+ GLK  I+ E+R L P GL   M +AQ +ED ++ ++Q   S G
Sbjct: 205 APLTTVPEDILEGNFINGLKPLIRAEVRLLKPRGLDLIMELAQRVEDRNELVRQAQGSYG 264

Query: 293 GGGPTLRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAP 352
            G     + S +  +G S+     +   S + S N  +  ++  I      ++     + 
Sbjct: 265 PGKMRNTSYSPSPDYGPSK---PPNLTHSGSLSQNHVAQLNARPIPSSPRNLMVGKAASS 324

Query: 353 SQRLIKEEMGAKKEKGLCFKCDGKFSFGHRYK-KELQFMFVQGEDMSPDEDTEEVGPKIA 412
            ++L   E+  K+E+GLC++CD KF  GH+ + KEL  + VQGE     E+ EE+G    
Sbjct: 325 FKKLSDVELQLKRERGLCYRCDEKFQPGHKCRNKELHVLVVQGE-----EEGEELGNVQV 384

Query: 413 DQGGEGMPESMTIKMANLSLNPMARFHSPKTVKVMGVIQGFLSITIREC-RCHFRGSVAG 472
           D+G     E+   ++  LS+N +   ++PK++K+ G I G   I + +C   H   SV  
Sbjct: 385 DEG-----ETEVGEVVELSINSVVGLNAPKSMKLKGTICGHSVIVLIDCGATHNFISVDL 444

Query: 473 NVRKNRDRLPFIGDEV------------QCGGMVGTIEKVIAACSILPL----------- 532
             +     +P  G  +             C G+V ++  +      LPL           
Sbjct: 445 AAQLQIPTVPTHGYGIIMGTGSAVRGCGVCKGVVISLPSIEVVDDFLPLKLGCTDVILGM 504

Query: 533 -------------------------VRSLDHSIELQPGVGLVNV---------------- 592
                                    V +L   + LQ   G V                  
Sbjct: 505 KWLETVGKMQVDWGNLTMKIKVGGQVVTLQGDVSLQKAQGSVKAMVKAFKEGDQGVLIEL 564

Query: 593 -------------RPYRYLQFQKD-----EIESVLPLVRSLDHSIELQPGVGLVNMRPYR 652
                         P  + +  +      E  + LP  RS DHSI LQ     VN+RPYR
Sbjct: 565 GSLGVEGEESDGESPSSFTELLQQYRVVFEWPNTLPPSRSRDHSIVLQAESAPVNVRPYR 624

Query: 653 YPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDK 659
           YP FQK+EIERLV+EML AGI+Q S SPFS+PVLLVKKK+GSWRFCV+YRA+N VT+PD+
Sbjct: 625 YPHFQKNEIERLVKEMLAAGIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRALNKVTVPDR 684

[Close]

BLAST of ClCG09G011570 vs. NCBI nr
Match: CAN78588.1 (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-53
Identity = 172/488 (35.25%), Postives = 237/488 (48.57%), Query Frame = 0


Query: 235  LKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIEDDQAIQQKVNSTGGGG 294
            LK I ++ +ES F+ GL  EI+ E R L P GL   M MAQ +ED     +      G  
Sbjct: 878  LKGISEEVMESTFMNGLLPEIRAEQRLLQPYGLGHLMEMAQRVEDRNLAMRAAREPNGPK 937

Query: 295  PT-LRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAPSQ 354
             T + +T+    W        G N +              T    V E  +      P +
Sbjct: 938  STKMLSTANRGEW------KIGENFQ--------------TRAVAVGEKTMSQRREIPIK 997

Query: 355  RLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSPDEDTEEVGPKIADQG 414
            RL + E+ A++EKGL FKC+ KFS GHR KKEL+ + V        ED EE   +  D+ 
Sbjct: 998  RLTESELQARREKGLWFKCEEKFSPGHRCKKELRVLLVH-------EDEEEDDNQFDDRA 1057

Query: 415  GEGMPESMTIKMA-NLSLNPMARFHSPKTVKVMGVI--------------QGFLSITIRE 474
             E  P  + +K A  LSLN +    +P T+K+ G I                FLS+ + +
Sbjct: 1058 TE-EPALIELKDAVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQ 1117

Query: 475  -------------------CRCHFRGSVAG------NVRKNRDRLPF-IGDEVQCGGM-- 534
                                    +G   G       +    D LP  +G+     GM  
Sbjct: 1118 QLTLPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPW 1177

Query: 535  VGTIEKVIAACSILPLVRSLDHSI------------------ELQPGVGLVNVRPYRYLQ 594
            +GT+  V     +L +   +  ++                  +L  GV  V       L 
Sbjct: 1178 LGTLGDVKVNWKMLTMKIKMGKAVMVLKGDPSLSRTETSTTSDLSEGVQEVPKTVKEVLA 1237

Query: 595  FQKDEIESV--LPLVRSLDHSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGIVQ 654
              +   E +  LP  R +DH+I+L  G   VN+RPYRYP   K+EI+RLV+EML AGIV+
Sbjct: 1238 QHQQIFEPITGLPPSRDIDHAIQLILGASPVNVRPYRYPHILKNEIKRLVQEMLEAGIVR 1297

Query: 655  LSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDKFPILMVDELLDELFGATIFSKID 659
             S SPFS+PVLLVKKK+G WRFC++YRA+N VT+PD+FPI ++DELLD+L GATIFSK+D
Sbjct: 1298 PSLSPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDELLDKLHGATIFSKLD 1337

[Close]

BLAST of ClCG09G011570 vs. NCBI nr
Match: RVW39682.1 (Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera])

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-53
Identity = 174/490 (35.51%), Postives = 239/490 (48.78%), Query Frame = 0


Query: 235 LKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIED-DQAIQQKVNSTGGG 294
           LK I ++ +ES F+ GL  EI+ E+R L P GL   M MAQ +ED + A++      G  
Sbjct: 112 LKGISEEVMESTFMNGLLPEIRAELRLLQPYGLGHLMEMAQRVEDRNLAMRVAREPNGPN 171

Query: 295 GPTLRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAPSQ 354
           GP             S   +S +N   +    N       T    V E  +      P +
Sbjct: 172 GP------------RSTKMLSSANRDEWKIGEN-----FQTKAVAVGEKTMSQRREIPIK 231

Query: 355 RLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSPDEDTEEVGPKIADQG 414
           RL + E+ A++EKGLCFKC+ KFS GHR KKEL+ + V        ED EE   +  D+ 
Sbjct: 232 RLTESELQARREKGLCFKCEEKFSPGHRCKKELRVLLVH-------EDEEEDDNRFDDRA 291

Query: 415 GEGMPESMTIKMA-NLSLNPMARFHSPKTVKVMGVI--------------QGFLSI-TIR 474
            E  P  + +K A  LSLN +    +  T+K+ G I                FLS+  ++
Sbjct: 292 TE-EPALIELKDAVELSLNSVVGLTTSGTMKIKGTIGSKEVIILVDSGTTHNFLSLELVQ 351

Query: 475 ECRCHFRGSVAGNVRKNRDRLPFIGDEVQCGGMVGTIEKVIAACSILPL----------- 534
           +       + +  V      +   G  + C G+  +++ +      LPL           
Sbjct: 352 QLALPLTTTTSYGVMMGTG-ISVKGKGI-CRGVCISMQGLTVVEDFLPLELGNTDVILGM 411

Query: 535 ----------VRSLDHSIELQPGVGLVNVRPYRYL-----QFQKDEIESV---------- 594
                     V   D + E Q G G  +V+    L         D  E V          
Sbjct: 412 PWLGTLGDVKVNWKDANNEDQNGEGSDSVKGRPSLSRTETSTTSDLSEGVQEVPKTVKEV 471

Query: 595 -------------LPLVRSLDHSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGI 654
                        LP  R +DH+I+L PG   VN+RPY YP   K+EIERLV+EML AGI
Sbjct: 472 LAQHQQIFGPITWLPPSRDIDHAIQLIPGASPVNVRPYWYPHILKNEIERLVQEMLEAGI 531

Query: 655 VQLSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDKFPILMVDELLDELFGATIFSK 659
           V+ S SPFS+PVLLVKKK+G WRFC++YRA+N VT+PD+FPI ++DELLD+L GATIFSK
Sbjct: 532 VRPSVSPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDELLDKLHGATIFSK 574

[Close]

BLAST of ClCG09G011570 vs. NCBI nr
Match: XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-52
Identity = 160/415 (38.55%), Postives = 213/415 (51.33%), Query Frame = 0


Query: 336 ITPVHETMVKSNYNAPSQRLIKEEMGAKKEKGLCFKCDGKFSFGHRYK-KELQFMFVQ-G 395
           +T   E+  KS  + P +++   EM  KKEKG CF+CD KFS  HR K +EL  + VQ G
Sbjct: 1   MTSPQESGAKSTMSQPYRQMTDNEMRIKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEG 60

Query: 396 EDMSPDEDTEEVGPKIADQGGEGMPESMTIKMANLSLNPMARFHSPKTVKVMGVIQGFLS 455
           ED+S  E+T++VG +I   G     + +  ++ANLSLN +   +S KT+K+ G I+G   
Sbjct: 61  EDLS--EETDQVGEEIETNGN----DEINTEIANLSLNSLVGLNSSKTIKIKGEIRGREV 120

Query: 456 ITIRE---CRCHFRGSVAGNVRKNRDRLPFIGDEVQCGGMV---GTIEKV---IAACSI- 515
           + + +           V   ++ + + +   G  +  GG+V   G  + V   IA  SI 
Sbjct: 121 VVLIDGGATHNFIAEEVVKELKISVETMDAYGVVLGTGGVVRATGVCKDVNLKIANLSIT 180

Query: 516 ---LPLV------------------------------------------RSLDHS----- 575
              LPL                                           RSL  S     
Sbjct: 181 HNFLPLPLGSVDVILGVTWLETLGKVIFDYKLSEMEFSSGEWVVILQGDRSLVRSQVSLK 240

Query: 576 --------------IEL----QPGVGLVNVRPYRYLQFQKDEIESV------------LP 635
                         IEL    Q G G        YL   + EI+ V            LP
Sbjct: 241 SMMKTFEKEDQGVLIELSTVEQWGAGEAREHIANYLSKLQPEIQKVLQSFSVFEPSNQLP 300

Query: 636 LVRSLDHSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLV 659
                DH+IEL+PG   +N+R YRYPQFQ DEIE+LV+EML+AGI+Q S+S FS+P+LLV
Sbjct: 301 PPHDHDHAIELEPGARAMNVRSYRYPQFQNDEIEKLVKEMLLAGIIQPSKSVFSSPMLLV 360

[Close]

BLAST of ClCG09G011570 vs. NCBI nr
Match: RVW54082.1 (Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera])

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-52
Identity = 176/511 (34.44%), Postives = 242/511 (47.36%), Query Frame = 0


Query: 235 LKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIED-DQAIQQKVNSTGGG 294
           LK I  + +ES F+ GL  EI+ E+  L P GL   M MAQ +ED + A++      G  
Sbjct: 217 LKGISKEVMESTFMNGLLPEIRAELHLLQPYGLGHLMEMAQRVEDRNLAMRAAREPNGPN 276

Query: 295 GPTLRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAPSQ 354
           GP             S   +S SN   +    N       T +  V E  +      P +
Sbjct: 277 GP------------KSTKMLSSSNRGEWKIREN-----FQTRVVVVGEKTMSQRREIPIK 336

Query: 355 RLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSPDEDTEEVGPKIADQG 414
           RL + E+ A++EKGLCFKC+ KFS GHR KKEL+ + V  ++   +ED  +   +  ++ 
Sbjct: 337 RLTESELQARREKGLCFKCEEKFSPGHRCKKELRVLLVHKDE---EEDDNQFDDRATEE- 396

Query: 415 GEGMPESMTIK-MANLSLNPMARFHSPKTVKVMGVI--------------QGFLSITIRE 474
               P  + +K +  LSLN +    +P T+K+ G I                FLS+ + +
Sbjct: 397 ----PALIELKDIVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQ 456

Query: 475 ---------------------------CR--C----------HFRGSVAGN--VRKNRDR 534
                                      CR  C           F     GN  V      
Sbjct: 457 QLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPW 516

Query: 535 LPFIGD----------EVQCGGMV----GTIEKVIAACSILPLVRSLDH----------- 594
           L  +GD          +++ G  V    G         S+  + R+L H           
Sbjct: 517 LGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRTKVSLKAMARALQHHSQGVWVELCQ 576

Query: 595 ---SIELQPGVGLVNVRPYRYLQFQKDEIESV--LPLVRSLDHSIELQPGVGLVNMRPYR 654
              + +L  GV  V       L   +   E +  LP  R +DH+I+L PG   VN+RPYR
Sbjct: 577 TSTTSDLSEGVQEVPKTVKEVLAQHQQIFEPITGLPPSRDIDHAIQLIPGASPVNVRPYR 636

Query: 655 YPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDK 659
           YP   K+EIERLV+EML AGIV+ S S FS+PVLLVKKK+G WRFC++Y A+N VTIPD+
Sbjct: 637 YPHILKNEIERLVQEMLEAGIVRPSLSSFSSPVLLVKKKDGGWRFCIDYCALNKVTIPDR 696

[Close]

BLAST of ClCG09G011570 vs. ExPASy Swiss-Prot
Match: Q84L14 (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP20 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 6.2e-35
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 65  MASLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 124
           MASLFKDP+KLS YRDRRF GTQ+E+E ALQ S TVYVGNMSFYTTEEQ YELFSRAGEI
Sbjct: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60

Query: 125 KKIIMGLDKNSKTPCGFCFVL 146
           +KIIMGLDKNSKTPCGFCF+L
Sbjct: 61  RKIIMGLDKNSKTPCGFCFIL 81

[Close]

BLAST of ClCG09G011570 vs. ExPASy Swiss-Prot
Match: Q9XFD1 (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-33
Identity = 67/81 (82.72%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 65  MASLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 124
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 125 KKIIMGLDKNSKTPCGFCFVL 146
           KKIIMGLDKN+KTPCGFCFVL
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVL 81

[Close]

BLAST of ClCG09G011570 vs. ExPASy Swiss-Prot
Match: B7P877 (Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-22
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 75  LSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN 134
           LS YRD+ F G++ E E  L+ STT+YVGNMSFYTTEEQ+YELFS+ G++KK+IMGLD+ 
Sbjct: 5   LSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRF 64

Query: 135 SKTPCGFCFV 145
            KTPCGFCFV
Sbjct: 65  HKTPCGFCFV 74

[Close]

BLAST of ClCG09G011570 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-22
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 550 HSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGS 609
           H IE++PG  L  ++PY   +  + EI ++V+++L    +  S+SP S+PV+LV KK+G+
Sbjct: 586 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT 645

Query: 610 WRFCVNYRAINNVTIPDKFPILMVDELLDELFGATIFSKIDLKSGYHQV 659
           +R CV+YR +N  TI D FP+  +D LL  +  A IF+ +DL SGYHQ+
Sbjct: 646 FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 694

[Close]

BLAST of ClCG09G011570 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-22
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 550 HSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGS 609
           H IE++PG  L  ++PY   +  + EI ++V+++L    +  S+SP S+PV+LV KK+G+
Sbjct: 612 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT 671

Query: 610 WRFCVNYRAINNVTIPDKFPILMVDELLDELFGATIFSKIDLKSGYHQV 659
           +R CV+YR +N  TI D FP+  +D LL  +  A IF+ +DL SGYHQ+
Sbjct: 672 FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 720

[Close]

BLAST of ClCG09G011570 vs. ExPASy TrEMBL
Match: A5B2I6 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.2e-54
Identity = 172/488 (35.25%), Postives = 237/488 (48.57%), Query Frame = 0


Query: 235  LKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIEDDQAIQQKVNSTGGGG 294
            LK I ++ +ES F+ GL  EI+ E R L P GL   M MAQ +ED     +      G  
Sbjct: 878  LKGISEEVMESTFMNGLLPEIRAEQRLLQPYGLGHLMEMAQRVEDRNLAMRAAREPNGPK 937

Query: 295  PT-LRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAPSQ 354
             T + +T+    W        G N +              T    V E  +      P +
Sbjct: 938  STKMLSTANRGEW------KIGENFQ--------------TRAVAVGEKTMSQRREIPIK 997

Query: 355  RLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSPDEDTEEVGPKIADQG 414
            RL + E+ A++EKGL FKC+ KFS GHR KKEL+ + V        ED EE   +  D+ 
Sbjct: 998  RLTESELQARREKGLWFKCEEKFSPGHRCKKELRVLLVH-------EDEEEDDNQFDDRA 1057

Query: 415  GEGMPESMTIKMA-NLSLNPMARFHSPKTVKVMGVI--------------QGFLSITIRE 474
             E  P  + +K A  LSLN +    +P T+K+ G I                FLS+ + +
Sbjct: 1058 TE-EPALIELKDAVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQ 1117

Query: 475  -------------------CRCHFRGSVAG------NVRKNRDRLPF-IGDEVQCGGM-- 534
                                    +G   G       +    D LP  +G+     GM  
Sbjct: 1118 QLTLPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPW 1177

Query: 535  VGTIEKVIAACSILPLVRSLDHSI------------------ELQPGVGLVNVRPYRYLQ 594
            +GT+  V     +L +   +  ++                  +L  GV  V       L 
Sbjct: 1178 LGTLGDVKVNWKMLTMKIKMGKAVMVLKGDPSLSRTETSTTSDLSEGVQEVPKTVKEVLA 1237

Query: 595  FQKDEIESV--LPLVRSLDHSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGIVQ 654
              +   E +  LP  R +DH+I+L  G   VN+RPYRYP   K+EI+RLV+EML AGIV+
Sbjct: 1238 QHQQIFEPITGLPPSRDIDHAIQLILGASPVNVRPYRYPHILKNEIKRLVQEMLEAGIVR 1297

Query: 655  LSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDKFPILMVDELLDELFGATIFSKID 659
             S SPFS+PVLLVKKK+G WRFC++YRA+N VT+PD+FPI ++DELLD+L GATIFSK+D
Sbjct: 1298 PSLSPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDELLDKLHGATIFSKLD 1337

[Close]

BLAST of ClCG09G011570 vs. ExPASy TrEMBL
Match: A0A438DW91 (Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=29760 GN=pol_580 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.1e-54
Identity = 174/490 (35.51%), Postives = 239/490 (48.78%), Query Frame = 0


Query: 235 LKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIED-DQAIQQKVNSTGGG 294
           LK I ++ +ES F+ GL  EI+ E+R L P GL   M MAQ +ED + A++      G  
Sbjct: 112 LKGISEEVMESTFMNGLLPEIRAELRLLQPYGLGHLMEMAQRVEDRNLAMRVAREPNGPN 171

Query: 295 GPTLRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAPSQ 354
           GP             S   +S +N   +    N       T    V E  +      P +
Sbjct: 172 GP------------RSTKMLSSANRDEWKIGEN-----FQTKAVAVGEKTMSQRREIPIK 231

Query: 355 RLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSPDEDTEEVGPKIADQG 414
           RL + E+ A++EKGLCFKC+ KFS GHR KKEL+ + V        ED EE   +  D+ 
Sbjct: 232 RLTESELQARREKGLCFKCEEKFSPGHRCKKELRVLLVH-------EDEEEDDNRFDDRA 291

Query: 415 GEGMPESMTIKMA-NLSLNPMARFHSPKTVKVMGVI--------------QGFLSI-TIR 474
            E  P  + +K A  LSLN +    +  T+K+ G I                FLS+  ++
Sbjct: 292 TE-EPALIELKDAVELSLNSVVGLTTSGTMKIKGTIGSKEVIILVDSGTTHNFLSLELVQ 351

Query: 475 ECRCHFRGSVAGNVRKNRDRLPFIGDEVQCGGMVGTIEKVIAACSILPL----------- 534
           +       + +  V      +   G  + C G+  +++ +      LPL           
Sbjct: 352 QLALPLTTTTSYGVMMGTG-ISVKGKGI-CRGVCISMQGLTVVEDFLPLELGNTDVILGM 411

Query: 535 ----------VRSLDHSIELQPGVGLVNVRPYRYL-----QFQKDEIESV---------- 594
                     V   D + E Q G G  +V+    L         D  E V          
Sbjct: 412 PWLGTLGDVKVNWKDANNEDQNGEGSDSVKGRPSLSRTETSTTSDLSEGVQEVPKTVKEV 471

Query: 595 -------------LPLVRSLDHSIELQPGVGLVNMRPYRYPQFQKDEIERLVREMLMAGI 654
                        LP  R +DH+I+L PG   VN+RPY YP   K+EIERLV+EML AGI
Sbjct: 472 LAQHQQIFGPITWLPPSRDIDHAIQLIPGASPVNVRPYWYPHILKNEIERLVQEMLEAGI 531

Query: 655 VQLSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDKFPILMVDELLDELFGATIFSK 659
           V+ S SPFS+PVLLVKKK+G WRFC++YRA+N VT+PD+FPI ++DELLD+L GATIFSK
Sbjct: 532 VRPSVSPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDELLDKLHGATIFSK 574

[Close]

BLAST of ClCG09G011570 vs. ExPASy TrEMBL
Match: A0A438F372 (Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=29760 GN=pol_407 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.9e-53
Identity = 176/511 (34.44%), Postives = 242/511 (47.36%), Query Frame = 0


Query: 235 LKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIED-DQAIQQKVNSTGGG 294
           LK I  + +ES F+ GL  EI+ E+  L P GL   M MAQ +ED + A++      G  
Sbjct: 217 LKGISKEVMESTFMNGLLPEIRAELHLLQPYGLGHLMEMAQRVEDRNLAMRAAREPNGPN 276

Query: 295 GPTLRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVKSNYNAPSQ 354
           GP             S   +S SN   +    N       T +  V E  +      P +
Sbjct: 277 GP------------KSTKMLSSSNRGEWKIREN-----FQTRVVVVGEKTMSQRREIPIK 336

Query: 355 RLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSPDEDTEEVGPKIADQG 414
           RL + E+ A++EKGLCFKC+ KFS GHR KKEL+ + V  ++   +ED  +   +  ++ 
Sbjct: 337 RLTESELQARREKGLCFKCEEKFSPGHRCKKELRVLLVHKDE---EEDDNQFDDRATEE- 396

Query: 415 GEGMPESMTIK-MANLSLNPMARFHSPKTVKVMGVI--------------QGFLSITIRE 474
               P  + +K +  LSLN +    +P T+K+ G I                FLS+ + +
Sbjct: 397 ----PALIELKDIVELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQ 456

Query: 475 ---------------------------CR--C----------HFRGSVAGN--VRKNRDR 534
                                      CR  C           F     GN  V      
Sbjct: 457 QLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPW 516

Query: 535 LPFIGD----------EVQCGGMV----GTIEKVIAACSILPLVRSLDH----------- 594
           L  +GD          +++ G  V    G         S+  + R+L H           
Sbjct: 517 LGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRTKVSLKAMARALQHHSQGVWVELCQ 576

Query: 595 ---SIELQPGVGLVNVRPYRYLQFQKDEIESV--LPLVRSLDHSIELQPGVGLVNMRPYR 654
              + +L  GV  V       L   +   E +  LP  R +DH+I+L PG   VN+RPYR
Sbjct: 577 TSTTSDLSEGVQEVPKTVKEVLAQHQQIFEPITGLPPSRDIDHAIQLIPGASPVNVRPYR 636

Query: 655 YPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGSWRFCVNYRAINNVTIPDK 659
           YP   K+EIERLV+EML AGIV+ S S FS+PVLLVKKK+G WRFC++Y A+N VTIPD+
Sbjct: 637 YPHILKNEIERLVQEMLEAGIVRPSLSSFSSPVLLVKKKDGGWRFCIDYCALNKVTIPDR 696

[Close]

BLAST of ClCG09G011570 vs. ExPASy TrEMBL
Match: A0A0V0IZ28 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.6e-52
Identity = 173/523 (33.08%), Postives = 241/523 (46.08%), Query Frame = 0


Query: 230 KQNARLKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIEDDQAIQQKVNS 289
           K +A +KE  D  L   F+ GLKEEI+ E+  L    L+  M MAQ +ED   + Q+V  
Sbjct: 51  KVSASMKEASDGMLSGVFLNGLKEEIRAEVMLLQAQTLREIMEMAQKVEDRNYVLQQVQG 110

Query: 290 TGGGGPTLRTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTS---FASSTSITPVHETMVKS 349
                   +  SG     +   G   +  R      +R S    AS  + +PVH     +
Sbjct: 111 -------FKFESGRGSASNKPVGFRPNYHRVANILESRDSRAGXASRNTDSPVHTATKST 170

Query: 350 NYNAPS--------QRLIKEEMGAKKEKGLCFKCDGKFSFGHRYKKELQFMFVQGEDMSP 409
           ++N  +        +RL   E   K+E GLCF+CD KF   HR K     + +  E  + 
Sbjct: 171 SFNGTAVAKSEGQFKRLSDSEFARKRELGLCFRCDEKFGPNHRCKNRQLNLLIISEAPNI 230

Query: 410 DEDTEEVGPKIADQGGEGMPE-SMTIKMANLSLNPMARFHSPKTVKVMGVIQG------- 469
           DED  E   +  +  GE + E  M   M  L++N +      +T+K++G I G       
Sbjct: 231 DEDETE---EFFESTGEDVTEGEMKGTMMVLNMNSVVGLTGGRTMKLVGKIHGHDVIILV 290

Query: 470 -------FLSITI------------------------------RECRCHFRG-------- 529
                  F+S T+                               E R   +G        
Sbjct: 291 DSGATHNFISSTLAHHLQLPIKKTKGFEVTIGNGQQVSGSEVCNEVRIDVQGVQINQQYF 350

Query: 530 ----------------SVAGNVRKNRDRLPF----IGDEVQCGGMVGTIEKVIAACSILP 589
                           +  G +R N   L       G  V   G    +  V++  ++  
Sbjct: 351 LFELRGTDVVLGMEWLATLGEMRVNWKLLTMKFKDAGRLVSLRGDPAMVRTVVSLKAMTN 410

Query: 590 LVRSLDHS--IELQPGVG-----LVNVRPYRYLQFQKDEIES---VLPLVRSLDHSIELQ 649
           L++  +    +EL    G      +  +    L +   E+      LP  RS DH+I LQ
Sbjct: 411 LLKKGNQGFLVELNQVTGTEDEAAITSKEIEKLLYDYPEVSEQALALPPRRSWDHAITLQ 470

Query: 650 PGVGLVNMRPYRYPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGSWRFCVN 659
            G    N+RPYRYP  QK EIERLV+EML AGI++ S SP+S+PVLLVKKK+GSWRFCV+
Sbjct: 471 SGAQPPNIRPYRYPHSQKAEIERLVKEMLAAGIIKTSTSPYSSPVLLVKKKDGSWRFCVD 530

[Close]

BLAST of ClCG09G011570 vs. ExPASy TrEMBL
Match: J3SDF5 (Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-50
Identity = 165/516 (31.98%), Postives = 246/516 (47.67%), Query Frame = 0


Query: 233 ARLKEIGDKALESKFVCGLKEEIQIEMRKLNPVGLKAKMTMAQLIEDDQAIQQKVNSTGG 292
           A L  I ++ L  KF+ GL  E+Q E+R LNP  L   M +A  +E+    + +VN    
Sbjct: 280 APLDGIPEEILMGKFIHGLNPELQSEIRVLNPYNLDQAMELALKLEE----RNRVNGARR 339

Query: 293 GGPTL-------RTTSGTSGWGSSRSGVSGSNVRSFTFSPNRTSFASSTSITPVHETMVK 352
            GP         R  +      S      GSN  + +++ N  S AS TS+       + 
Sbjct: 340 TGPRSGSFSIYNRGPNSNPSLPSVYGSQGGSNASTKSWAIN--SNASQTSVNNAKPPPLS 399

Query: 353 SNYNAPSQRLIKEEMGAKKEKGLCFKCDGKFSFGHR-YKKELQFMFVQGED--------- 412
           S      +RL ++E+  K+ KGLCFKCD K+  GH+  +KEL  +F++  +         
Sbjct: 400 SRGFGEMRRLTEKELQEKRAKGLCFKCDEKWGVGHQCRRKELSVLFMEDNEEDELEGALS 459

Query: 413 --MSPDEDTEEVGPKIADQGGEGMPESMTIKMANL--------SLNPMA--RFHSPKTVK 472
              +P   TEE+ P+++     G+    T+K++ L         ++P A   F S K + 
Sbjct: 460 GSEAPPSPTEEIPPEVSLNSVIGLSNPKTMKLSGLIDNHEVVVMIDPGATHNFLSLKAID 519

Query: 473 VMG-------------------------------------VIQGFLSITIRECR------ 532
            +G                                     V++ FL + +          
Sbjct: 520 KLGIPVTESEEFGVSLGDGQAVRGTGICRAVALYLDGGLVVVEDFLPLGLGNSDVILGVQ 579

Query: 533 -CHFRGSVAGNVRKNRDRLPFIGDEVQCGGMVGTIEKVIAACSILPLVRSLDHSIELQ-- 592
                G+V  N +  +      G      G        ++  ++L  +R     + L+  
Sbjct: 580 WLETLGTVVSNWKTQKMSFQLGGVPYTLTGDPTLARSKVSLKAMLRTLRKEGGGLWLECN 639

Query: 593 --PGVGLVNVRPYR-------YLQFQKDEIESV------LPLVRSLDHSIELQPGVGLVN 652
                G  ++R  +       +LQ      E V      LP  R  +H+I L+ G   V 
Sbjct: 640 QVEAGGAGSIRDSKVEQEIPPFLQELMRRFEGVFETPVGLPPRRGHEHAIVLKEGSNPVG 699

Query: 653 MRPYRYPQFQKDEIERLVREMLMAGIVQLSRSPFSNPVLLVKKKNGSWRFCVNYRAINNV 659
           +RPYRYPQFQKDEIERL++EML AGI+Q S SPFS+PV+LVKKK+GSWRFCV+YRA+N  
Sbjct: 700 VRPYRYPQFQKDEIERLIKEMLAAGIIQPSTSPFSSPVILVKKKDGSWRFCVDYRALNKE 759

[Close]

BLAST of ClCG09G011570 vs. TAIR 10
Match: AT5G44200.1 (CAP-binding protein 20 )

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-34
Identity = 67/81 (82.72%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 65  MASLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 124
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 125 KKIIMGLDKNSKTPCGFCFVL 146
           KKIIMGLDKN+KTPCGFCFVL
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVL 81

[Close]

BLAST of ClCG09G011570 vs. TAIR 10
Match: AT5G44200.2 (CAP-binding protein 20 )

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-34
Identity = 67/81 (82.72%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 65  MASLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 124
           MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 125 KKIIMGLDKNSKTPCGFCFVL 146
           KKIIMGLDKN+KTPCGFCFVL
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVL 81

The following BLAST results are available for this feature:

BLAST of ClCG09G011570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022848903.1	3.6e-56	34.05	uncharacterized protein LOC111371244 [Olea europaea var. sylvestris]	[more]
CAN78588.1	1.3e-53	35.25	hypothetical protein VITISV_043911 [Vitis vinifera]	[more]
RVW39682.1	1.7e-53	35.51	Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]	[more]
XP_031737572.1	1.4e-52	38.55	uncharacterized protein LOC116402461 [Cucumis sativus]	[more]
RVW54082.1	1.4e-52	34.44	Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]	[more]

BLAST of ClCG09G011570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84L14	6.2e-35	86.42	Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q9XFD1	3.4e-33	82.72	Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 P...	[more]
B7P877	4.6e-22	68.57	Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3...	[more]
Q99315	6.0e-22	43.12	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.0e-22	43.12	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of ClCG09G011570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5B2I6	6.2e-54	35.25	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438DW91	8.1e-54	35.51	Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=2976...	[more]
A0A438F372	6.9e-53	34.44	Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=2976...	[more]
A0A0V0IZ28	7.6e-52	33.08	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
J3SDF5	1.9e-50	31.98	Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 ...	[more]

BLAST of ClCG09G011570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44200.1	2.4e-34	82.72	CAP-binding protein 20	[more]
AT5G44200.2	2.4e-34	82.72	CAP-binding protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 164..191
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 549..658 e-value: 2.6E-37 score: 130.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..311
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 544..658
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 506..540
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 506..540
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 544..658
None	No IPR available	CDD	cd01647	RT_LTR	coord: 587..658 e-value: 1.08419E-27 score: 108.066
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 99..164 e-value: 2.6E-9 score: 46.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 100..144 e-value: 5.2E-7 score: 29.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 98..144 score: 10.223745
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 69..186 e-value: 2.3E-15 score: 58.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 628..655 e-value: 2.6E-37 score: 130.2
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 100..144 e-value: 1.69947E-28 score: 106.862
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 537..658
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 91..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G011570.2	ClCG09G011570.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding