ClCG09G011410 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G011410
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr09: 11255016 .. 11256238 (+)
RNA-Seq ExpressionClCG09G011410
SyntenyClCG09G011410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTGATCCATGATGAACAACAGGCGTACTTGAGCCATACGTTGGACCTTCCAATTGTGGATGGGTATGTAGAGCCTCCCCCTCGCCTACTAGAGAGCATTGTTCGTGATACCATCTTGAGTGATGAGAGTGAGGAACGGGGGATTGGTGAAGATACGCATGCGGGTGGTCCTTTTACAGATTCTGATCCACTTGTGAGTGAGCCGCTTGTGACACGCCCAACTGAGATTGCCCCACCTACGAGGACGACATCTACTAGTTCTTGGACGACGTGTGATAGCAGGCAACACTTACAACGATTGGAGAGTAAATTGGATCGAATGGAGTCCTTATTTACGACTGAGTTGAAGGCCATAAAGGACATGTTGATGCTGATAATGAAGGTAAGTTAGTTGTGAATTTCTATACTTTAAATTTAAAATCTTATGCTTTAAATCGAATAATTTTATATCATTTGTAGGGAAAGTCGGTCGACTCGCAGCAGTATTACGACGCTAGAGAAGGTTCGTTGTTCATGAACTAGTTGCCGGAGATCAATCTGTTGACGATTGCAAAGATACGGCTAGTCCACCTGCTCAGGATCCCACTCCCATTGACTCAAACTCAAACGATGGCAAAGATACGGCTGATCCATCCATCGTCCCTATAGATGTATCATTGCGAGGTGAAGATACGATTGGTCCAACAGATGTTCCACTGAAGTAGCCTAAAAGACGAGGTATGATCTTCTGCATCTAGTACTTGATACATTTTTCATGTAACTTTGATATGGTTTCTTTGTATGTAGCCTTGGAAGATTGACAATGACGTCATTCCGTTGTCTCAACCTCCGAATGTGGTTCATAAGGAAATGCCCACGAGGAAGAGGAGAGCCCCATGGAAGCTTCGTAGTTCAATAATGGATCAACCGGCTGGGAAGAAGAGGAATAAAAAAGTGAAACCATATAATCCGATGGCTAAGATACCAGCCAAGTTTGAGAAGCAGTTCTATGCATATATTGTTGACCCTAGACTGATTGTTATGAGCATAAGGAGGCTGTTGTGGTTTATGAACTTGTTGACATCGGATACATTCATCGATGATGATGTAAGTAAAGTTTGTGGAACTTCGTTTTCAGGTTCATACTCAATGATGGATACAAAGGGTGTGGAATATGTCAGGAAAAACCATAGCAATGGACTTTGCAATGCTTTTGTGTTGATTGGATATAAGCATTAG

mRNA sequence

ATGTCATTGATCCATGATGAACAACAGGCGTACTTGAGCCATACGTTGGACCTTCCAATTGTGGATGGGTATGTAGAGCCTCCCCCTCGCCTACTAGAGAGCATTGTTCGTGATACCATCTTGAGTGATGAGAGTGAGGAACGGGGGATTGGTGAAGATACGCATGCGGGTGGTCCTTTTACAGATTCTGATCCACTTGTGAGTGAGCCGCTTGTGACACGCCCAACTGAGATTGCCCCACCTACGAGGACGACATCTACTAGTTCTTGGACGACGTGTGATAGCAGGCAACACTTACAACGATTGGAGAGTAAATTGGATCGAATGGAGTCCTTATTTACGACTGAGTTGAAGGCCATAAAGGACATGTTGATGCTGATAATGAAGAGAAGGTTCGTTGTTCATGAACTAGTTGCCGGAGATCAATCTGTTGACGATTGCAAAGATACGGCTAGTCCACCTGCTCAGGATCCCACTCCCATTGACTCAAACTCAAACGATGGCAAAGATACGGCTGATCCATCCATCGTCCCTATAGATCCTTGGAAGATTGACAATGACGTCATTCCGTTGTCTCAACCTCCGAATGTGGTTCATAAGGAAATGCCCACGAGGAAGAGGAGAGCCCCATGGAAGCTTCGTAGTTCAATAATGGATCAACCGGCTGGGAAGAAGAGGAATAAAAAAGTGAAACCATATAATCCGATGGCTAAGATACCAGCCAAGTTTGAGAAGCAGTTCTATGCATATATTGTTGACCCTAGACTGATTGTTATGAGCATAAGGAGGCTGTTGTGGTTTATGAACTTGTTGACATCGGATACATTCATCGATGATGATGTAAGTAAAGTTTGTGGAACTTCGTTTTCAGGTTCATACTCAATGATGGATACAAAGGGTGTGGAATATGTCAGGAAAAACCATAGCAATGGACTTTGCAATGCTTTTGTGTTGATTGGATATAAGCATTAG

Coding sequence (CDS)

ATGTCATTGATCCATGATGAACAACAGGCGTACTTGAGCCATACGTTGGACCTTCCAATTGTGGATGGGTATGTAGAGCCTCCCCCTCGCCTACTAGAGAGCATTGTTCGTGATACCATCTTGAGTGATGAGAGTGAGGAACGGGGGATTGGTGAAGATACGCATGCGGGTGGTCCTTTTACAGATTCTGATCCACTTGTGAGTGAGCCGCTTGTGACACGCCCAACTGAGATTGCCCCACCTACGAGGACGACATCTACTAGTTCTTGGACGACGTGTGATAGCAGGCAACACTTACAACGATTGGAGAGTAAATTGGATCGAATGGAGTCCTTATTTACGACTGAGTTGAAGGCCATAAAGGACATGTTGATGCTGATAATGAAGAGAAGGTTCGTTGTTCATGAACTAGTTGCCGGAGATCAATCTGTTGACGATTGCAAAGATACGGCTAGTCCACCTGCTCAGGATCCCACTCCCATTGACTCAAACTCAAACGATGGCAAAGATACGGCTGATCCATCCATCGTCCCTATAGATCCTTGGAAGATTGACAATGACGTCATTCCGTTGTCTCAACCTCCGAATGTGGTTCATAAGGAAATGCCCACGAGGAAGAGGAGAGCCCCATGGAAGCTTCGTAGTTCAATAATGGATCAACCGGCTGGGAAGAAGAGGAATAAAAAAGTGAAACCATATAATCCGATGGCTAAGATACCAGCCAAGTTTGAGAAGCAGTTCTATGCATATATTGTTGACCCTAGACTGATTGTTATGAGCATAAGGAGGCTGTTGTGGTTTATGAACTTGTTGACATCGGATACATTCATCGATGATGATGTAAGTAAAGTTTGTGGAACTTCGTTTTCAGGTTCATACTCAATGATGGATACAAAGGGTGTGGAATATGTCAGGAAAAACCATAGCAATGGACTTTGCAATGCTTTTGTGTTGATTGGATATAAGCATTAG

Protein sequence

MSLIHDEQQAYLSHTLDLPIVDGYVEPPPRLLESIVRDTILSDESEERGIGEDTHAGGPFTDSDPLVSEPLVTRPTEIAPPTRTTSTSSWTTCDSRQHLQRLESKLDRMESLFTTELKAIKDMLMLIMKRRFVVHELVAGDQSVDDCKDTASPPAQDPTPIDSNSNDGKDTADPSIVPIDPWKIDNDVIPLSQPPNVVHKEMPTRKRRAPWKLRSSIMDQPAGKKRNKKVKPYNPMAKIPAKFEKQFYAYIVDPRLIVMSIRRLLWFMNLLTSDTFIDDDVSKVCGTSFSGSYSMMDTKGVEYVRKNHSNGLCNAFVLIGYKH
Homology
[Close]
BLAST of ClCG09G011410 vs. NCBI nr
Match: KAA0041004.1 (hypothetical protein E6C27_scaffold125G002220 [Cucumis melo var. makuwa] >TYK20360.1 hypothetical protein E5676_scaffold228G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-16
Identity = 75/179 (41.90%), Postives = 99/179 (55.31%), Query Frame = 0 

Query: 109 MESLFTTELKAIKDMLMLIMKRRFVVHELVAGDQSVDDCKDTASPPAQDPTPIDSNSNDG 168
           MES FT EL AIK++LM ++K   +       DQ+VDD         +  T I  +S D 
Sbjct: 1   MESSFTIELWAIKELLMDLVK---LYWSPDIDDQNVDD---------EVGTTISEDSED- 60

Query: 169 KDTADPSIVPIDPWKIDNDVIPLSQPPNVVHKEMPTRKRRAPWKLRSSIMDQPAGKKRNK 228
                  I+P+D        I L +   V+ KE  TRKR    KL+SS++ Q  GKKR K
Sbjct: 61  ------DIIPVD--------ISLGE---VIPKEKTTRKRDVLRKLQSSVIKQAQGKKRRK 120

Query: 229 KVKPYNPMAKIPAKFEKQFYAYIVDP------RLIVMSIRRLLWFMNLLTSDTFIDDDV 282
           KV+PYNP  KI AKF+KQF+AY++DP      R  V  +R L WF +LLT  TF +D+V
Sbjct: 121 KVRPYNPACKILAKFDKQFFAYLIDPRRKKELRKTVRGLRMLSWFRDLLTPTTFTNDNV 149

[Close]
BLAST of ClCG09G011410 vs. ExPASy TrEMBL
Match: A0A5D3DA67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00570 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 75/179 (41.90%), Postives = 99/179 (55.31%), Query Frame = 0 

Query: 109 MESLFTTELKAIKDMLMLIMKRRFVVHELVAGDQSVDDCKDTASPPAQDPTPIDSNSNDG 168
           MES FT EL AIK++LM ++K   +       DQ+VDD         +  T I  +S D 
Sbjct: 1   MESSFTIELWAIKELLMDLVK---LYWSPDIDDQNVDD---------EVGTTISEDSED- 60

Query: 169 KDTADPSIVPIDPWKIDNDVIPLSQPPNVVHKEMPTRKRRAPWKLRSSIMDQPAGKKRNK 228
                  I+P+D        I L +   V+ KE  TRKR    KL+SS++ Q  GKKR K
Sbjct: 61  ------DIIPVD--------ISLGE---VIPKEKTTRKRDVLRKLQSSVIKQAQGKKRRK 120

Query: 229 KVKPYNPMAKIPAKFEKQFYAYIVDP------RLIVMSIRRLLWFMNLLTSDTFIDDDV 282
           KV+PYNP  KI AKF+KQF+AY++DP      R  V  +R L WF +LLT  TF +D+V
Sbjct: 121 KVRPYNPACKILAKFDKQFFAYLIDPRRKKELRKTVRGLRMLSWFRDLLTPTTFTNDNV 149

[Close]
BLAST of ClCG09G011410 vs. ExPASy TrEMBL
Match: A0A5A7U7N5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00410 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.4e-04
Identity = 63/228 (27.63%), Postives = 103/228 (45.18%), Query Frame = 0 

Query: 102 LESKLDRMESLFTTELKAIKDMLMLIMKRRFVVHELVAG------------DQSVDDCKD 161
           +++ + RM+S  + +L  IK +LM ++K + V  +   G            +  VDD   
Sbjct: 1   MDNFVQRMKSFVSDKLSVIKKLLMTLVKGKAVDFKQCYGSGEGTSFNAPEANTLVDDEFV 60

Query: 162 TASPPAQD--PTPIDSNSNDGKDTADPSIVPIDPWKIDNDVIPLSQPPNVVHKEMPTR-- 221
               P  D  PT  ++ ++  +D  D  I  ID      DV P    P +  K  P    
Sbjct: 61  NIPAPIIDAQPTNEEARTSISEDPRDGVI--IDVPSEGEDVSPPPVQPMLDLKYEPIEFD 120

Query: 222 -KRRAPWKLRSSIMDQPAGKKRNKKVKPYNPMAKIPAKFEKQFYAYIVDPR------LIV 281
            + + P+     +      KK+  + +      +IP KF+KQF AY+ DPR        V
Sbjct: 121 VEVKLPY-----VFSHVVPKKKTTRKRDIRKKLRIPMKFDKQFLAYLSDPRKEKELQKTV 180

Query: 282 MSIRRLLWFMNLLTSDTFIDDDV-SKVCGTSFSGSYSMMDTKGVEYVR 306
            S R L WFM+LL+  TF+D+D+ SK C +     ++ +D   V ++R
Sbjct: 181 RSSRVLSWFMDLLSPTTFMDEDIRSKYCSSHVKKRFTTVDRAIVNFLR 221

The following BLAST results are available for this feature:
BLAST of ClCG09G011410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041004.13.0e-1641.90hypothetical protein E6C27_scaffold125G002220 [Cucumis melo var. makuwa] >TYK203... [more]
BLAST of ClCG09G011410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG09G011410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DA671.5e-1641.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7N58.4e-0427.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of ClCG09G011410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G011410.2ClCG09G011410.2mRNA