ClCG09G010960 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G010960
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S ribosomal protein L3
Location	CG_Chr09: 10776684 .. 10777624 (+)
RNA-Seq Expression	ClCG09G010960
Synteny	ClCG09G010960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACAGGAAATTTGAGCACCCAAGGCACGGGTCCCTTGGATTCATCCAAGGAAATGAGTAGCTCGTCACTAGGGAAAAGTGAAGGTTTTCCCAAAGGATGGCGCAAGCAAGCCAAGCAGGCTGACTGCCTTTTCAGGTTACAAGGTTGGAATGACACACATTGTCAGGGAGGTCGAGAAGCCAGGATCTAAACTTCACAAGAAGGAGACATGTGAGCTTGTGACAATCATTGAGACCCAACCAATGGTTATTGTAGGTATTGTTGGATATGTGAAGACCCCATGTGGTCTTCATGCTTTGGGCACTGTATGGTCTCACAGCATTTGAGTGAGGAAGTAAGGAGAAGGTTCTATAAGAACTGGTGCAAGTCTAAGAAGAAGCTTTTCACTAAGTACTCTAAACAATATGAAACTGATGAGGGAAAGAAGACCATCTAGGAGAAGCTTGAGAAGCTGAAGAAATATGCATATGTAATTTGTGTCTTGACTCACACTCAGATTACTAAGATGAAGGGATTGAAGCAAAAGAAAGCTCACCTGATGGAGATTCAGGTTAATGGTGGTTGGTGGTACAATTGCTCAGAAGGTGGACTATACCAATGGATTCTTTGAGAAGCAAGTTCCAGTAGGAGCTGTTTTCCAAAGAGATGAGAAAATTGACCTTATTGGTGTGACCAAAGGTAAAGGTTATGAAGGTGTCATCACTCGTTGGGGTGTTACATGTCTCCCTCGTAAGACTCATAGGGGTTTTAGGAAGGTGGCTTGTATTGGTGCTTGGTGTCACAATCTAACTTGAAGATAGTAGATTGTGACCCCACTTGTACAGACAGTGCAGTGGCGGCACAAGAGTGTCGACACATCCGGCAATGATAGAGGGCCAAGAGAAGTGTCGTGATGCGACCGAGGAGGACGGTGCATCATCCAACACACCAAGATAA

mRNA sequence

ATGTTCACAGGAAATTTGAGCACCCAAGGCACGGGTCCCTTGGATTCATCCAAGGAAATGAGTAGCTCGTCACTAGGGAAAAGTGAAGGTTTTCCCAAAGGATGGCGCAAGCAAGCCAAGCAGGCTGACTGCCTTTTCAGGTATTGTTGGATATGTGAAGACCCCATGTGGTCTTCATGCTTTGGGCACTGTATGGTCTCACAGCATTTGAGTGAGGAAGTAAGGAGAAGGTTCTATAAGAACTGGTGCAAGTCTAAGAAGAAGCTTTTCACTAAGTTAATGGTGGTTGGTGGTACAATTGCTCAGAAGGTGGACTATACCAATGGATTCTTTGAGAAGCAAGTTCCAGTAGGAGCTGTTTTCCAAAGAGATGAGAAAATTGACCTTATTGGTGTGACCAAAGGTAAAGGTTATGAAGGTGTCATCACTCGTTGGGGTGTTACATGTCTCCCTCGTAAGACTCATAGGGGTTTTAGGAAGTGCAGTGGCGGCACAAGAGTGTCGACACATCCGGCAATGATAGAGGGCCAAGAGAAGTGTCGTGATGCGACCGAGGAGGACGGTGCATCATCCAACACACCAAGATAA

Coding sequence (CDS)

ATGTTCACAGGAAATTTGAGCACCCAAGGCACGGGTCCCTTGGATTCATCCAAGGAAATGAGTAGCTCGTCACTAGGGAAAAGTGAAGGTTTTCCCAAAGGATGGCGCAAGCAAGCCAAGCAGGCTGACTGCCTTTTCAGGTATTGTTGGATATGTGAAGACCCCATGTGGTCTTCATGCTTTGGGCACTGTATGGTCTCACAGCATTTGAGTGAGGAAGTAAGGAGAAGGTTCTATAAGAACTGGTGCAAGTCTAAGAAGAAGCTTTTCACTAAGTTAATGGTGGTTGGTGGTACAATTGCTCAGAAGGTGGACTATACCAATGGATTCTTTGAGAAGCAAGTTCCAGTAGGAGCTGTTTTCCAAAGAGATGAGAAAATTGACCTTATTGGTGTGACCAAAGGTAAAGGTTATGAAGGTGTCATCACTCGTTGGGGTGTTACATGTCTCCCTCGTAAGACTCATAGGGGTTTTAGGAAGTGCAGTGGCGGCACAAGAGTGTCGACACATCCGGCAATGATAGAGGGCCAAGAGAAGTGTCGTGATGCGACCGAGGAGGACGGTGCATCATCCAACACACCAAGATAA

Protein sequence

MFTGNLSTQGTGPLDSSKEMSSSSLGKSEGFPKGWRKQAKQADCLFRYCWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTKLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRKCSGGTRVSTHPAMIEGQEKCRDATEEDGASSNTPR

Homology

[Close]

BLAST of ClCG09G010960 vs. NCBI nr
Match: RVW75860.1 (60S ribosomal protein L3 [Vitis vinifera])

HSP 1 Score: 159.1 bits (401), Expect = 3.9e-35
Identity = 84/174 (48.28%), Postives = 101/174 (58.05%), Query Frame = 0


Query: 49  CWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTK---------------- 108
           CW+ +D  W S F + + +QHLSEEV+RRFYKNWCKSKKK FTK                
Sbjct: 18  CWLSQDTAWPS-FSNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKYESEDGKKDIQA 77

Query: 109 ------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQ 168
                                         + V GG +A+KVDY  GFFEKQ+P+ A+FQ
Sbjct: 78  QLEKMKKYCNVIRVLAHTQGLKQKKAHLMEIQVNGGDVAKKVDYAYGFFEKQIPIDAIFQ 137

Query: 169 RDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI 175
           +DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Sbjct: 138 KDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG----AWHPARV 186

[Close]

BLAST of ClCG09G010960 vs. NCBI nr
Match: CAB4289346.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-34
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKL-FTKLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDE 126
           +QHLSEEV+RRFYKNWCKSKKK    ++ V GGTIAQKV++   FFEKQ+P+ AVFQ+DE
Sbjct: 107 AQHLSEEVKRRFYKNWCKSKKKAHLMEIQVNGGTIAQKVEFAKSFFEKQIPIDAVFQKDE 166

Query: 127 KIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI 175
            ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Sbjct: 167 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG----AWHPARV 213

[Close]

BLAST of ClCG09G010960 vs. NCBI nr
Match: RWW01576.1 (hypothetical protein GW17_00035382 [Ensete ventricosum] >RZS05001.1 hypothetical protein BHM03_00035433 [Ensete ventricosum])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-33
Identity = 81/143 (56.64%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------L 126
           +QHLSEEVRRRFYKNWCKSKKK FTK                                  
Sbjct: 24  AQHLSEEVRRRFYKNWCKSKKKAFTKYSKKFDSEEGKKEVQVQLEKMKKYASVIRVLAHT 83

Query: 127 MVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRK 175
            V GGT+AQKVD+   FFEKQVP+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRK
Sbjct: 84  QVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 143

[Close]

BLAST of ClCG09G010960 vs. NCBI nr
Match: XP_022156015.1 (60S ribosomal protein L3 [Momordica charantia] >XP_022156016.1 60S ribosomal protein L3 [Momordica charantia] >XP_022156017.1 60S ribosomal protein L3 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 6.3e-33
Identity = 86/161 (53.42%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------- 126
           +QHLSEEVRRRFYKNWCKSKKK FTK                                  
Sbjct: 107 AQHLSEEVRRRFYKNWCKSKKKAFTKYAKQYETDEGKKNIQGGLEKLKKYASVIRVLAHT 166

Query: 127 -----------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                            + V GGTIAQKVDY  GFFEKQVPV AVFQ+DE IDLIGVTKG
Sbjct: 167 QITKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAVFQKDEMIDLIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. NCBI nr
Match: OEL23779.1 (60S ribosomal protein L3 [Dichanthelium oligosanthes])

HSP 1 Score: 151.8 bits (382), Expect = 6.3e-33
Identity = 82/143 (57.34%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------L 126
           +QHLSEEVRRRFYKNWCKSKKK FTK                                 +
Sbjct: 191 AQHLSEEVRRRFYKNWCKSKKKAFTKTHVNFCISALMYVSIFQIRKMKGLKQKKAHLMEI 250

Query: 127 MVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRK 175
            V GGTIA KVDY   FFEK+VPV AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRK
Sbjct: 251 QVNGGTIADKVDYGYNFFEKEVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 310

[Close]

BLAST of ClCG09G010960 vs. ExPASy Swiss-Prot
Match: P35684 (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL3 PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-33
Identity = 80/161 (49.69%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------- 126
           +QHLSEEVRRRFYKNWCKSKKK FTK                                  
Sbjct: 107 AQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHT 166

Query: 127 -----------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                            + + GGTIA KVDY   FFEK++PV AVFQ+DE ID+IGVTKG
Sbjct: 167 QIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. ExPASy Swiss-Prot
Match: P17094 (60S ribosomal protein L3-1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=1 SV=5)

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-32
Identity = 78/161 (48.45%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFT----------------------------------- 126
           +QHLSEEVRRRFYKNW KSKKK FT                                   
Sbjct: 107 AQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHT 166

Query: 127 ----------------KLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                           ++ + GGTIAQKVD+   FFEKQ+P+ AVFQ+DE ID+IGVTKG
Sbjct: 167 QIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. ExPASy Swiss-Prot
Match: P22738 (60S ribosomal protein L3-2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=2 SV=4)

HSP 1 Score: 135.6 bits (340), Expect = 6.1e-31
Identity = 76/161 (47.20%), Postives = 88/161 (54.66%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------- 126
           +QHLSEE+RRRFYKNW KSKKK FT+                                  
Sbjct: 107 AQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHT 166

Query: 127 -----------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                            + + GG IA+KVDY    FEKQVPV A+FQ+DE ID+IGVTKG
Sbjct: 167 QIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. ExPASy Swiss-Prot
Match: Q6BXM5 (60S ribosomal protein L3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RPL3 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-23
Identity = 64/159 (40.25%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------- 126
           ++HLSEEVRRRFYKNW KSKKK FTK                                  
Sbjct: 107 AEHLSEEVRRRFYKNWYKSKKKAFTKYSAKYAQDGAQVERELARIKKYASVVRVLAHTQI 166

Query: 127 --------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGY 176
                         + V GG+++ KVD+    FEK V V +VF++DE +D+  VTKG G+
Sbjct: 167 KKTPLAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGF 226

[Close]

BLAST of ClCG09G010960 vs. ExPASy Swiss-Prot
Match: Q4R5Q0 (60S ribosomal protein L3 OS=Macaca fascicularis OX=9541 GN=RPL3 PE=2 SV=3)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-23
Identity = 64/160 (40.00%), Postives = 81/160 (50.62%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------- 126
           ++H+S+E +RRFYKNW KSKKK FTK                                  
Sbjct: 107 AEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHT 166

Query: 127 ----------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGK 175
                           + V GGT+A+K+D+     E+QVPV  VF +DE ID+IGVTKGK
Sbjct: 167 QMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGK 226

[Close]

BLAST of ClCG09G010960 vs. ExPASy TrEMBL
Match: A0A438GUI8 (60S ribosomal protein L3 OS=Vitis vinifera OX=29760 GN=RPL3_2 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 84/174 (48.28%), Postives = 101/174 (58.05%), Query Frame = 0


Query: 49  CWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTK---------------- 108
           CW+ +D  W S F + + +QHLSEEV+RRFYKNWCKSKKK FTK                
Sbjct: 18  CWLSQDTAWPS-FSNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKYESEDGKKDIQA 77

Query: 109 ------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQ 168
                                         + V GG +A+KVDY  GFFEKQ+P+ A+FQ
Sbjct: 78  QLEKMKKYCNVIRVLAHTQGLKQKKAHLMEIQVNGGDVAKKVDYAYGFFEKQIPIDAIFQ 137

Query: 169 RDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI 175
           +DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Sbjct: 138 KDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG----AWHPARV 186

[Close]

BLAST of ClCG09G010960 vs. ExPASy TrEMBL
Match: A0A6J5VK41 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS47938 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 5.6e-35
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKL-FTKLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDE 126
           +QHLSEEV+RRFYKNWCKSKKK    ++ V GGTIAQKV++   FFEKQ+P+ AVFQ+DE
Sbjct: 107 AQHLSEEVKRRFYKNWCKSKKKAHLMEIQVNGGTIAQKVEFAKSFFEKQIPIDAVFQKDE 166

Query: 127 KIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI 175
            ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Sbjct: 167 MIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG----AWHPARV 213

[Close]

BLAST of ClCG09G010960 vs. ExPASy TrEMBL
Match: A0A444DTY5 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00035382 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 81/143 (56.64%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------L 126
           +QHLSEEVRRRFYKNWCKSKKK FTK                                  
Sbjct: 24  AQHLSEEVRRRFYKNWCKSKKKAFTKYSKKFDSEEGKKEVQVQLEKMKKYASVIRVLAHT 83

Query: 127 MVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRK 175
            V GGT+AQKVD+   FFEKQVP+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRK
Sbjct: 84  QVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 143

[Close]

BLAST of ClCG09G010960 vs. ExPASy TrEMBL
Match: A0A6J1DTJ8 (60S ribosomal protein L3 OS=Momordica charantia OX=3673 GN=LOC111022987 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 86/161 (53.42%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------- 126
           +QHLSEEVRRRFYKNWCKSKKK FTK                                  
Sbjct: 107 AQHLSEEVRRRFYKNWCKSKKKAFTKYAKQYETDEGKKNIQGGLEKLKKYASVIRVLAHT 166

Query: 127 -----------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                            + V GGTIAQKVDY  GFFEKQVPV AVFQ+DE IDLIGVTKG
Sbjct: 167 QITKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQVPVDAVFQKDEMIDLIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. ExPASy TrEMBL
Match: A0A5C7HAT7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018901 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 81/137 (59.12%), Postives = 91/137 (66.42%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------LMVVGGT 126
           +QHLSE+VRRRFY+NWCKSKKK FTK                           + V GGT
Sbjct: 107 AQHLSEKVRRRFYRNWCKSKKKAFTKYSKQYESEDGKKSIQSQMEKMRKYATVIRVNGGT 166

Query: 127 IAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFR 175
           IAQKVDY  GFFEKQVPV AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKT+RG  
Sbjct: 167 IAQKVDYAYGFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTYRGLC 226

[Close]

BLAST of ClCG09G010960 vs. TAIR 10
Match: AT1G43170.1 (ribosomal protein 1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 78/161 (48.45%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFT----------------------------------- 126
           +QHLSEEVRRRFYKNW KSKKK FT                                   
Sbjct: 107 AQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHT 166

Query: 127 ----------------KLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                           ++ + GGTIAQKVD+   FFEKQ+P+ AVFQ+DE ID+IGVTKG
Sbjct: 167 QIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. TAIR 10
Match: AT1G43170.2 (ribosomal protein 1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 78/161 (48.45%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFT----------------------------------- 126
           +QHLSEEVRRRFYKNW KSKKK FT                                   
Sbjct: 107 AQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHT 166

Query: 127 ----------------KLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                           ++ + GGTIAQKVD+   FFEKQ+P+ AVFQ+DE ID+IGVTKG
Sbjct: 167 QIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. TAIR 10
Match: AT1G43170.3 (ribosomal protein 1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 78/161 (48.45%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFT----------------------------------- 126
           +QHLSEEVRRRFYKNW KSKKK FT                                   
Sbjct: 107 AQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHT 166

Query: 127 ----------------KLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                           ++ + GGTIAQKVD+   FFEKQ+P+ AVFQ+DE ID+IGVTKG
Sbjct: 167 QIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKG 226

[Close]

BLAST of ClCG09G010960 vs. TAIR 10
Match: AT1G43170.4 (ribosomal protein 1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 78/161 (48.45%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFT----------------------------------- 126
           +QHLSEEVRRRFYKNW KSKKK FT                                   
Sbjct: 24  AQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHT 83

Query: 127 ----------------KLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                           ++ + GGTIAQKVD+   FFEKQ+P+ AVFQ+DE ID+IGVTKG
Sbjct: 84  QIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKG 143

[Close]

BLAST of ClCG09G010960 vs. TAIR 10
Match: AT1G43170.5 (ribosomal protein 1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-33
Identity = 78/161 (48.45%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 67  SQHLSEEVRRRFYKNWCKSKKKLFT----------------------------------- 126
           +QHLSEEVRRRFYKNW KSKKK FT                                   
Sbjct: 107 AQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHT 166

Query: 127 ----------------KLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKG 175
                           ++ + GGTIAQKVD+   FFEKQ+P+ AVFQ+DE ID+IGVTKG
Sbjct: 167 QIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKG 226

The following BLAST results are available for this feature:

BLAST of ClCG09G010960 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW75860.1	3.9e-35	48.28	60S ribosomal protein L3 [Vitis vinifera]	[more]
CAB4289346.1	1.1e-34	68.47	unnamed protein product [Prunus armeniaca]	[more]
RWW01576.1	4.8e-33	56.64	hypothetical protein GW17_00035382 [Ensete ventricosum] >RZS05001.1 hypothetical...	[more]
XP_022156015.1	6.3e-33	53.42	60S ribosomal protein L3 [Momordica charantia] >XP_022156016.1 60S ribosomal pro...	[more]
OEL23779.1	6.3e-33	57.34	60S ribosomal protein L3 [Dichanthelium oligosanthes]	[more]

BLAST of ClCG09G010960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35684	2.9e-33	49.69	60S ribosomal protein L3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL3 PE=2 S...	[more]
P17094	1.9e-32	48.45	60S ribosomal protein L3-1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=1 SV=5	[more]
P22738	6.1e-31	47.20	60S ribosomal protein L3-2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=2 SV=4	[more]
Q6BXM5	2.1e-23	40.25	60S ribosomal protein L3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /...	[more]
Q4R5Q0	2.8e-23	40.00	60S ribosomal protein L3 OS=Macaca fascicularis OX=9541 GN=RPL3 PE=2 SV=3	[more]

BLAST of ClCG09G010960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438GUI8	1.9e-35	48.28	60S ribosomal protein L3 OS=Vitis vinifera OX=29760 GN=RPL3_2 PE=3 SV=1	[more]
A0A6J5VK41	5.6e-35	68.47	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS47938 PE=3 S...	[more]
A0A444DTY5	2.3e-33	56.64	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00035382 PE=3 SV=1	[more]
A0A6J1DTJ8	3.0e-33	53.42	60S ribosomal protein L3 OS=Momordica charantia OX=3673 GN=LOC111022987 PE=3 SV=...	[more]
A0A5C7HAT7	3.0e-33	59.12	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018901 PE=3 SV=1	[more]

BLAST of ClCG09G010960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43170.1	1.4e-33	48.45	ribosomal protein 1	[more]
AT1G43170.2	1.4e-33	48.45	ribosomal protein 1	[more]
AT1G43170.3	1.4e-33	48.45	ribosomal protein 1	[more]
AT1G43170.4	1.4e-33	48.45	ribosomal protein 1	[more]
AT1G43170.5	1.4e-33	48.45	ribosomal protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 66..94 e-value: 1.0E-8 score: 34.6 coord: 95..162 e-value: 8.3E-24 score: 84.2
IPR044892	Ribosomal protein L3, domain 3, archaeal type superfamily	GENE3D	4.10.960.10	Ribosomal protein L3, domain 3	coord: 110..180 e-value: 1.0E-10 score: 44.0
None	No IPR available	GENE3D	3.30.1430.10		coord: 59..95 e-value: 2.6E-5 score: 26.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..195
None	No IPR available	PANTHER	PTHR11363:SF13	60S RIBOSOMAL PROTEIN L3-1	coord: 94..163 coord: 65..93
IPR045077	Ribosomal protein L3, archaeal/eukaryotic type	PANTHER	PTHR11363	60S RIBOSOMAL PROTEIN L3-RELATED	coord: 94..163 coord: 65..93
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 121..144
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 66..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G010960.2	ClCG09G010960.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome