ClCG09G010690 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G010690
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSmall nuclear ribonucleoprotein E
LocationCG_Chr09: 10512092 .. 10518200 (+)
RNA-Seq ExpressionClCG09G010690
SyntenyClCG09G010690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTCTTTTATATTACAATGGATTATTGATTAGGTTGATACGCTTTTTTCACATTTAAACCGTAAAAGCCTCCGTTGCCCTAATTGAAGTTCCATTCCCGTAGCTGGCGACCGTGAGGCTGTGAGCTGCGATTTGCGAGTGAAATCACCGAGAGTTAGGCCTCCAATTTCCTTTCAACCCCTTTCTTGAGAAATCTATTCGATTTAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATTGTACCGTCTCATTTCAACTTCTTTTGCTTCATTTCATTCTTGCTTTTCGTTTTTCTTTTCTTTTTCTCTATGTGTTTCACTTATACATTTTGTTTTCCTCTTTCATTGGATGGATGTTGGTGCGCCTTTAGAACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCCTTTTCATGATCATTTCATTTATTTTCCATTTTGGGTGTGCACGTTTATGGTTTTTTATAGTGAAATTTGTGTGTTGTTTCTCTGATGCTACTTACTTTTGTCTTCATGTTTGTAATTTATACAGAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGTAAGTTCTTTAGACTTGTGGGCTTTTGCTTTGAGAAACCATCGTGCGAACTATTAATTTCTCTACTCTTAATGTACATTTGAATTTTTTAAAAGTTTACAAATGCTGAACCTTCATCTATTTTCTCTCTCTCCCTCTTTCGAACCAAGGTACATAGTTATGCTTTTACTGTCTTCACACTAAAAAGAGAGCGTTCCAATCTAAATAGAATGGAAGTTAGTTTAGTAAAATTGGTTAGCATTTGATATTTAATACGTTTTGTAGAGGTACAGAAAGCTTCGAACGTTGAGGTATGATAACGAGAGAAAAATCTAAGTTGCCTTGGACTAATCATTTGTTTGATAAGCAAATTCTGTTAAGCCATTTAAAATTTTCCGATGACACCTTGATATTTTGTCCAAATAATCAAGGTTGCCTTCAGAATTGGTGGGGTTTCTTGATCATTATTTTGACAAGTGCAAGACTGTCTCTAAATATTTCATAAACCTCCTTAATGGGAATCAATATCAGTAAGGATATTGTGATTGAGCAGGCTGCCTCTTTGGGTGCAAAATGGAAGAGTTGCCAATGACTTACTTAGGTGTACCGCTTGGGGGTAATTTTCGTTCAAAACGTTTTTGGGGCCTAATAATAGTCAAATTCAAAGCTGAGCTTGATAAGTGTAAGCTTACCCATCTTTCTAAGGCTGGGAGACTTGCTCTAGCTAACTCTACCTTAAATAGTCTTCCTCTTTATAACTTTTTCAGTCTTTAAGCCTCCTATAATGGTGATTAATGATATGTAACTAGATTGTGAGAAACTTTTCTGGAAGGAGGTGCTTTTCAGTCGGGTAGCCACTTAGTTAAATGGAGTTGACCTCTCTACATCTTCAGTATGGGATCTCTATGTGGGTTGTTTACGTTAAAGAATCAATGCTATTCTCTTAAAGTGGCTGTGGTGCTTCATCCATTAGAAAAATCCCTGTGGAGGATGGTGATTGGTAGTATTTATGGTTGTGAACCTCTTGAGTGGATGTCTTTACCTCCAAAAGGGGCCACAGGGCTGACTGTGGTTTGAAATAGCTAAAATTGTGCTTTCTTCTTGAATTTCATTCAGCTTAGAGTGAATAATAAGGAAAGAATTAAACTCTGGTAGTCTGGTGTGATAGATGGTTGGGAGCTGTGTCTTTGAAGGAAGCTTTTCTGAGTCTTTTCCTCATTTGTCAATAGATTATGTGGGTGATTGTTGGAATTCTGAGTACAACAACTGAGACCTCGGTTTCAGAAGGGTTACTAAGGACAATGAATTTGATAGTTTGATGCGTAATATCTCAATGATTGATACCATTAGATTGTGGGATCGAATCGATAAAGCTTACTGGTCCTTGGAAAATTCTGGGGCGTTCTCCGCCCATTCGACCTTCCATAAACTTACCCAAACTAGTTATAAGCTCAAAACCCTGCTGATTAAGTGGATATTAAAGTTCAGTATTCCAAAGAAGATAAAAGTCTTCCTATGGAATCTCACTCATTATAGTCTAAATACTCATGAGTGGATACAAAGGAAGCTTAGAAAGCATTGCATGTCTCCATTGGTGTGCTTGCTCTGCCTCAAAGGGTAGGAATCCAGTAACCACTTACTCTTTTTTCTAGCTTTGCTAGAAGGCGTTGGGAGCATCTTTTTAAAGCTTTTAGTCTAACACTTTGTCTTCCTGAGGAGACGGGTAGTTGGGTTTGGGAAGCTCTAAAAGGGTGGTGCTTTGAAGGTAAAGCTTAAATCCTATGGGGTTGTGCTACTCTGGCTCTTTTATGGGAGTTGTGGAAAAAAGAAAATTCTTCTTTTTACCTAAGATTGAAATGTGAGATTTTTCTGGAATGGAGATGAAAAACTTTATTGGAGCTTCTGCATTGTCTGTTGACCCATAATTTCTTTTGGACAGTCAATATTAAGAATGGAGCAGCTTGGGGGAAAAACTAATCAAATAAAAATGGTGTGCAGTACATCAATTATTAGGAAATATTTGTGTGAGTTGTATGTATAAGTTTTACAAATGGTCTAATGAGAGGGATGGAGATAATGTTTAATCCACCAATGTTTCTCTTGTTTCTTCTTCCACTCTTGGGTCGAGAAAGCAGCTCCAGTACCATAATAATGTGTTATTTCTAAAACTTAGAATTTCATTAACCAAAGGAAAAATTGATTAAACATGGGACTATGATGGATTAGGGTGCTACACATTCTAACTACAAAAATACCACCCATTAATTATAAAAGTAACCTTATCCGCAACCATTGTAATTAGTCTTAAGTAGAACAGTAAATACAGTTGAATCAATCAGTTTAGCACCAACCTATGAACTTTGCCTAACATCCAATATCATCTTCTTATAGGTAAAAAGCTAGCTATTAAAGCTTGAATTGATAAAGTTCTTCAACATTATCCCTCTTTTTGGTGTCTTAACCCATAGTATTGACCTAACCCAAATTTATAATAGTTGGGCTCCTTTTTTTAAGTTGCGTGGGGCTACCTCATCTCCCCCTCTTTTTATATCTCTCTCTTTGATAATGAAAGTTATGTTCCTTATCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAACAAAAAGAAAAACCGTAGTATTGAGTCTATTGACCTTGCAATGTAGGATTGGAAAGAAAATTTAACTTCCATCCAATATTTACAAATTTGCTTTGGAATACCTTTGGAGACATTATGCTTTTGAAATGCCTGGTGGACGACCTGGGATTCCATCTGTTTGATGGAGGGAGAGCAAGAAAGATGCTGGAGAAATATATGTTTGAGCAAGGAGAGCTAGACAATATGCAAAAGGGTTATGAAAGGTCCAAACTGTAGTGTCCAATTCATTAGGTCGACAATCTTCTGCGTGGGCCTATCCGTATTTAGTTCTTCATAAGATCATTAAGATCTCTTCCAGCATTCCATGCGTCTTTGGCGTTCCTTTCCGGGGTAGAGATACCATAAAATCTAGGCAAGATCTCCTTTACTATTGACATGATCTGCACAACCAAAACATTACTGTTATTAGTATTAATTGTTATTACAAAAAGGCCAAGGACAAGATCAAACTCATAATTACAAAAAGGCCAAGTGACTTTGGTGTTTTTTTGGCCTAGTGATGAACGGGCTATAACCGTTATCTAAGTGTTTTATATTGCTCTATAGGTGGAAATTCTGAACCCCGAGATCTATGTATGTTATAAGTTGTCCAGTGAGAAGAGTGACTGTCTAATTTTTAACATATAGTCCTGTTTCAGTCTGTAGTCTATGGAACAGAAAAGTTGCTCCTAGCTACTGATTATGTAAACTGAATTAGAACTAAGGAGGGTAGGGTTATTATAGTGGAGGATACTCCATTGTTGTTTTCAATTCAGTAGGATTACTTTCTTTTTATTGCATTTTCCACTGCTTGATACTAAATTGTACTCCGTGATAATCATTTTGTTTTTGGTCTTTGGTTTCTTAAAATTTAGTTTGTAAACACTACTTCCATATATGAATTTCTATGCATTGGACCATTGGTATCTACTTTCTACAACTGTTTTCTAAATTGTACTCCTGATAATCATTTGGAGTTAACACAATTTTTAACGACATTAAACTAACCATGAAATTGTTATGAATCGAGGCCTAAGTTCTCCAGATTGAGGGCTTCTACTATAATTTTATGATGAGCCTCTGAACATTATTAATTTTCTGGAGATTACTTCTGAGTTTTACTTCCCCAGGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCCGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAAACTTTAGGTTCGTCTCCTCATTATTACCCTCCCGTAGCCAATACTTAAACTAGTTTAAGGACAGACTAAAAACTTGTTTCCAACTTCACTCTTTTCAGGGAGGATATTGCTTAAAGGAGACAACATAACTCTGATGATGAACTCGTAAGTCCTTTCGAAGCTCTCTCTTTCAAAATTCATGAATTCCAATGCATGATTGCTCTCTCTAAAAAATTCATGAATTGTAATCCAATGCAAAATTGCAGGGGGAAGTGATGGCCATTTTTGCACCCATATAAGAGATAGTGAAGTGTACCCCTTTCATGGTGAAACTTGGAATCCTTGTGTTGATCATAGACATTGAATGTTTTTTTAACTGTCAATTGGTTAGCTGTTTTTGTACTTGCGTTAAAAGAAGTTAGAATGTCAGCTTATCTGACAGATAGCTATTGCACTCAACTATTCCAGCTCTTATGTTGTTGCTTAGATCATTGTATTTAGTTTTTGCATATATCCTCAAACTTTTTTTTATTATATGCTAGATATTGCCGCTTGCTGGGCAGTCTCACTCTCATACCTGGAGTTGTATGCTATTATGCTGCCGTTGTCCTTTATTGCTTACGACAATCATTTTTTAAACATGCTTTCAAGCTTGAGCTCTGTTTCCAAAACTGTTTTCTCTGAATTGGGGTGGAGGTTGGTAAATATGCCTGTTATGCTACAGGCGAATTTGAATTGGCTGGTTTGTTCGAGAGAGAAAAAAGTATTCAATATGGCTGTTTCTTATTAATCATTATGCATGTCCTTTAACAACCATTGATATAATTTTGCATTGCTCGTCACATCGAGGCAGTAATTGAAGTTTAGAGAGGGAGAAAAAGAAAAAGAAGTAGCGAAACAAGTTGGTTTTTCTTTTTGTTTACAGCTTTACAAGTTTCACGTCGGTTACTACTGAGTGA

mRNA sequence

GTCTTCTTTTATATTACAATGGATTATTGATTAGGTTGATACGCTTTTTTCACATTTAAACCGTAAAAGCCTCCGTTGCCCTAATTGAAGTTCCATTCCCGTAGCTGGCGACCGTGAGGCTGTGAGCTGCGATTTGCGAGTGAAATCACCGAGAGTTAGGCCTCCAATTTCCTTTCAACCCCTTTCTTGAGAAATCTATTCGATTTAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATTAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCCGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAAACTTTAGGGAGGATATTGCTTAAAGGAGACAACATAACTCTGATGATGAACTCCTTTACAAGTTTCACGTCGGTTACTACTGAGTGA

Coding sequence (CDS)

ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATTAACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCCGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAAACTTTAGGGAGGATATTGCTTAAAGGAGACAACATAACTCTGATGATGAACTCCTTTACAAGTTTCACGTCGGTTACTACTGAGTGA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNSFTSFTSVTTE
Homology
[Close]
BLAST of ClCG09G010690 vs. NCBI nr
Match: XP_004139778.1 (small nuclear ribonucleoprotein E [Cucumis sativus] >XP_008447758.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo] >XP_038896948.1 small nuclear ribonucleoprotein E-like [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          NVKKKSRKTLGRILLKGDNITLMMNS
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNS 86

[Close]
BLAST of ClCG09G010690 vs. NCBI nr
Match: XP_039006230.1 (small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039014446.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039018264.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039036978.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039036979.1 small nuclear ribonucleoprotein E-like [Hibiscus syriacus])

HSP 1 Score: 166.8 bits (421), Expect = 9.3e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          N+KKKSRKTLGRILLKGDNITLMMNS
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNS 86

[Close]
BLAST of ClCG09G010690 vs. NCBI nr
Match: RDX76304.1 (Small nuclear ribonucleoprotein E, partial [Mucuna pruriens])

HSP 1 Score: 166.8 bits (421), Expect = 9.3e-38
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSFTSFT 92
          N+KKKSRKTLGRILLKGDNITLMMN+  S T
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTVLSST 91

[Close]
BLAST of ClCG09G010690 vs. NCBI nr
Match: XP_022156313.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 small nuclear ribonucleoprotein E-like [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          NVKKKSRKTLGRILLKGDNITLMMN+
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG09G010690 vs. NCBI nr
Match: EEF30637.1 (Small nuclear ribonucleoprotein E, putative [Ricinus communis])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          NVKKK+RKTLGRILLKGDNITLMMNS
Sbjct: 61 NVKKKTRKTLGRILLKGDNITLMMNS 86

[Close]
BLAST of ClCG09G010690 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG09G010690 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG09G010690 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG09G010690 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG09G010690 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-28
Identity = 59/81 (72.84%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSRKTLGRILLKGDNITLMMN 86
          KSRK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQS 89

[Close]
BLAST of ClCG09G010690 vs. ExPASy TrEMBL
Match: A0A0A0K3R1 (Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_7G206940 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          NVKKKSRKTLGRILLKGDNITLMMNS
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNS 86

[Close]
BLAST of ClCG09G010690 vs. ExPASy TrEMBL
Match: A0A1S3BIS5 (Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103490154 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          NVKKKSRKTLGRILLKGDNITLMMNS
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNS 86

[Close]
BLAST of ClCG09G010690 vs. ExPASy TrEMBL
Match: A0A371FDC9 (Small nuclear ribonucleoprotein E (Fragment) OS=Mucuna pruriens OX=157652 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.5e-38
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNSFTSFT 92
          N+KKKSRKTLGRILLKGDNITLMMN+  S T
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTVLSST 91

[Close]
BLAST of ClCG09G010690 vs. ExPASy TrEMBL
Match: A0A6J1DT21 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.7e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          NVKKKSRKTLGRILLKGDNITLMMN+
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG09G010690 vs. ExPASy TrEMBL
Match: B9T0H9 (Small nuclear ribonucleoprotein E OS=Ricinus communis OX=3988 GN=RCOM_0729670 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.7e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          NVKKK+RKTLGRILLKGDNITLMMNS
Sbjct: 61 NVKKKTRKTLGRILLKGDNITLMMNS 86

[Close]
BLAST of ClCG09G010690 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 156.8 bits (395), Expect = 9.0e-39
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          ++KKK+RK LGRILLKGDNITLMMN+
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNA 86

[Close]
BLAST of ClCG09G010690 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 154.8 bits (390), Expect = 3.4e-38
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNS 87
          ++KK +RK LGRILLKGDNITLMMN+
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNT 86

[Close]
BLAST of ClCG09G010690 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-30
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSRKTLG 72
          ++KK +RK LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]
BLAST of ClCG09G010690 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 72
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 69

Query: 73 GRILLKGDNITLMM 85
           +ILL G+NI +++
Sbjct: 70 DQILLNGNNIAILV 79

The following BLAST results are available for this feature:
BLAST of ClCG09G010690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139778.17.1e-38100.00small nuclear ribonucleoprotein E [Cucumis sativus] >XP_008447758.1 PREDICTED: s... [more]
XP_039006230.19.3e-3898.84small nuclear ribonucleoprotein E-like [Hibiscus syriacus] >XP_039014446.1 small... [more]
RDX76304.19.3e-3893.41Small nuclear ribonucleoprotein E, partial [Mucuna pruriens][more]
XP_022156313.11.6e-3798.84small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 sma... [more]
EEF30637.11.6e-3798.84Small nuclear ribonucleoprotein E, putative [Ricinus communis][more]
BLAST of ClCG09G010690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4FUI22.4e-2872.84Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
P623032.4e-2872.84Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1[more]
P623042.4e-2872.84Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
P623052.4e-2872.84Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1[more]
A1XQR92.4e-2872.84Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1[more]
BLAST of ClCG09G010690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3R13.5e-38100.00Small nuclear ribonucleoprotein E OS=Cucumis sativus OX=3659 GN=Csa_7G206940 PE=... [more]
A0A1S3BIS53.5e-38100.00Small nuclear ribonucleoprotein E OS=Cucumis melo OX=3656 GN=LOC103490154 PE=3 S... [more]
A0A371FDC94.5e-3893.41Small nuclear ribonucleoprotein E (Fragment) OS=Mucuna pruriens OX=157652 GN=SNR... [more]
A0A6J1DT217.7e-3898.84Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239... [more]
B9T0H97.7e-3898.84Small nuclear ribonucleoprotein E OS=Ricinus communis OX=3988 GN=RCOM_0729670 PE... [more]
BLAST of ClCG09G010690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30330.19.0e-3991.86Small nuclear ribonucleoprotein family protein [more]
AT2G18740.13.4e-3890.70Small nuclear ribonucleoprotein family protein [more]
AT2G18740.22.0e-3090.14Small nuclear ribonucleoprotein family protein [more]
AT5G48870.11.7e-0536.49Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 19..85
e-value: 1.7E-17
score: 74.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 20..83
e-value: 1.0E-17
score: 63.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..86
e-value: 6.6E-42
score: 143.2
NoneNo IPR availablePANTHERPTHR11193:SF10SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..86
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..86
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 7..85
e-value: 2.30162E-53
score: 158.871
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 12..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G010690.2ClCG09G010690.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding