ClCG09G009358 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G009358
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	S-protein homolog
Location	CG_Chr09: 8935125 .. 8935569 (+)
RNA-Seq Expression	ClCG09G009358
Synteny	ClCG09G009358

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAAGAAAAGAAGCATCTGGCAGTGGTTCTTTTTCTTGTGGTGGCGACTATGGCAATGGTACAGCTATGCGCGGCGGTTCCACTGCCACTCCCAAGGTGGCACATTCATGTGGTAAATGGGTTGAACAATGAAACCCTGTTGGTTCATTGTAAATCCAAAGATGATGATTTGGGAAACCACAGTTTGAGTACCAACGGAGGAATTTCAATGGACTTTTAAGGTCAACTTTTTTGGAACAACATTGTTTTGGTGCTACCTGCAGAAGCCAAATTTTAAAGTATCGTTTGAATCTTTTTGGGTTGAAAGCACTCACCCTTGGCTTGCTTCTAGGTGCTTTGACAAAAATTGTATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAATAATCCTATTAATGTTGATGAACTTGTACATCAGTGGAACAAGATAGCTTAG

mRNA sequence

ATGTATGAAGAAAAGAAGCATCTGGCAGTGGTTCTTTTTCTTGTGGTGGCGACTATGGCAATGGTACAGCTATGCGCGGCGGTTCCACTGCCACTCCCAAGGTGGCACATTCATGTGGTAAATGGGTTGAACAATGAAACCCTGTTGAAGCCAAATTTTAAAGTATCGTTTGAATCTTTTTGGGTTGAAAGCACTCACCCTTGGCTTGCTTCTAGGTGCTTTGACAAAAATTGTATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAATAATCCTATTAATGTTGATGAACTTGTACATCAGTGGAACAAGATAGCTTAG

Coding sequence (CDS)

ATGTATGAAGAAAAGAAGCATCTGGCAGTGGTTCTTTTTCTTGTGGTGGCGACTATGGCAATGGTACAGCTATGCGCGGCGGTTCCACTGCCACTCCCAAGGTGGCACATTCATGTGGTAAATGGGTTGAACAATGAAACCCTGTTGAAGCCAAATTTTAAAGTATCGTTTGAATCTTTTTGGGTTGAAAGCACTCACCCTTGGCTTGCTTCTAGGTGCTTTGACAAAAATTGTATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAATAATCCTATTAATGTTGATGAACTTGTACATCAGTGGAACAAGATAGCTTAG

Protein sequence

MYEEKKHLAVVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLLKPNFKVSFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQWNKIA

Homology

[Close]

BLAST of ClCG09G009358 vs. NCBI nr
Match: KAA0067970.1 (uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 78/147 (53.06%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 1   MYEEKKHLAVVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL----------- 60
           MYEEK +L VV+ LV+  +A+VQ C AVPLPLP+W IHVVNGLNNETLL           
Sbjct: 1   MYEEKMNLVVVILLVLVAVAVVQPCTAVPLPLPKWRIHVVNGLNNETLLVHCKSKDDDLG 60

Query: 61  ------------------------------KPNFKVSFESFWVESTHPWLASRCFDKNCI 107
                                         KPNF VSFESFWVE +HPWL SRCF  +CI
Sbjct: 61  IHNLVSKGEEFQWTFKVNFFGTTLFWCYLQKPNFSVSFESFWVEKSHPWLNSRCFHNDCI 120

[Close]

BLAST of ClCG09G009358 vs. NCBI nr
Match: XP_008461539.1 (PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-34
Identity = 78/147 (53.06%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 1   MYEEKKHLAVVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL----------- 60
           MYE+   LA+ L LV+  + +VQ   AVPLPLP+WHIHVVNGL N+TL            
Sbjct: 1   MYEKYMQLAMPLLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRNQTLFVHCKSKDDDLG 60

Query: 61  ------------------------------KPNFKVSFESFWVESTHPWLASRCFDKNCI 107
                                         KPNF V+FESFWVE THPWL SRCFDKNCI
Sbjct: 61  NHTLSTKGQEVQWTFKVNFFGTTLFWCYLKKPNFYVAFESFWVEKTHPWLTSRCFDKNCI 120

[Close]

BLAST of ClCG09G009358 vs. NCBI nr
Match: XP_008462114.1 (PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 77/140 (55.00%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 7   HLAVVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL----------------- 66
           HLAVV  LV+  M +VQ C AVP+P PRWHIHVVNGL+NETLL                 
Sbjct: 6   HLAVVPLLVLVAMVVVQPCTAVPIPHPRWHIHVVNGLSNETLLVHCKSRDDDLGIQHLVK 65

Query: 67  -----------------------KPNFKVSFESFWVESTHPWLASRCFDKNCIWIAKDDG 107
                                  KPNF VSFESFWVE  H WL SRC+DKNCIWIAKDDG
Sbjct: 66  GAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDDG 125

[Close]

BLAST of ClCG09G009358 vs. NCBI nr
Match: XP_004139722.1 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 78/142 (54.93%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 7   HLAVV-LFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL---------------- 66
           HLAVV L +V+  M +VQ C AVP+P PRWHIHVVNGL+NETLL                
Sbjct: 2   HLAVVPLLVVLVAMLVVQPCMAVPIPHPRWHIHVVNGLSNETLLVHCKSGDDDLGIQHLV 61

Query: 67  ------------------------KPNFKVSFESFWVESTHPWLASRCFDKNCIWIAKDD 108
                                   KPNF VSFESFWVE  H WL SRC+DKNCIWIAKDD
Sbjct: 62  RGAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDD 121

[Close]

BLAST of ClCG09G009358 vs. NCBI nr
Match: KAE8646232.1 (hypothetical protein Csa_016625, partial [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 9.7e-28
Identity = 72/133 (54.14%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 7   HLAVV-LFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL---------------- 66
           HLAVV L +V+  M +VQ C AVP+P PRWHIHVVNGL+NETLL                
Sbjct: 36  HLAVVPLLVVLVAMLVVQPCMAVPIPHPRWHIHVVNGLSNETLLVHCKSGDDDLGIQHLV 95

Query: 67  ------------------------KPNFKVSFESFWVESTHPWLASRCFDKNCIWIAKDD 99
                                   KPNF VSFESFWVE  H WL SRC+DKNCIWIAKDD
Sbjct: 96  RGAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDD 155

[Close]

BLAST of ClCG09G009358 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.8e-04
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 0


Query: 69  LASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 104
           L  RC  KNC+W AK+DG+YL N+ I  D L  +W
Sbjct: 113 LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]

BLAST of ClCG09G009358 vs. ExPASy TrEMBL
Match: A0A5A7VL75 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001560 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 78/147 (53.06%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 1   MYEEKKHLAVVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL----------- 60
           MYEEK +L VV+ LV+  +A+VQ C AVPLPLP+W IHVVNGLNNETLL           
Sbjct: 1   MYEEKMNLVVVILLVLVAVAVVQPCTAVPLPLPKWRIHVVNGLNNETLLVHCKSKDDDLG 60

Query: 61  ------------------------------KPNFKVSFESFWVESTHPWLASRCFDKNCI 107
                                         KPNF VSFESFWVE +HPWL SRCF  +CI
Sbjct: 61  IHNLVSKGEEFQWTFKVNFFGTTLFWCYLQKPNFSVSFESFWVEKSHPWLNSRCFHNDCI 120

[Close]

BLAST of ClCG09G009358 vs. ExPASy TrEMBL
Match: A0A1S3CEQ0 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500111 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 78/147 (53.06%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 1   MYEEKKHLAVVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL----------- 60
           MYE+   LA+ L LV+  + +VQ   AVPLPLP+WHIHVVNGL N+TL            
Sbjct: 1   MYEKYMQLAMPLLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRNQTLFVHCKSKDDDLG 60

Query: 61  ------------------------------KPNFKVSFESFWVESTHPWLASRCFDKNCI 107
                                         KPNF V+FESFWVE THPWL SRCFDKNCI
Sbjct: 61  NHTLSTKGQEVQWTFKVNFFGTTLFWCYLKKPNFYVAFESFWVEKTHPWLTSRCFDKNCI 120

[Close]

BLAST of ClCG09G009358 vs. ExPASy TrEMBL
Match: A0A1S3CG89 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500542 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.4e-33
Identity = 77/140 (55.00%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 7   HLAVVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL----------------- 66
           HLAVV  LV+  M +VQ C AVP+P PRWHIHVVNGL+NETLL                 
Sbjct: 6   HLAVVPLLVLVAMVVVQPCTAVPIPHPRWHIHVVNGLSNETLLVHCKSRDDDLGIQHLVK 65

Query: 67  -----------------------KPNFKVSFESFWVESTHPWLASRCFDKNCIWIAKDDG 107
                                  KPNF VSFESFWVE  H WL SRC+DKNCIWIAKDDG
Sbjct: 66  GAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDDG 125

[Close]

BLAST of ClCG09G009358 vs. ExPASy TrEMBL
Match: A0A6J1CPC6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 66/147 (44.90%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 1   MYEEKKHLAVVLFLVVATMAMVQLCAAVPLP---LPRWHIHVVNGLNNETLL-------- 60
           MY + + + VV+FLV    A++QL  A  L    LP+WHIHVVNGL+  TL         
Sbjct: 1   MYHKTRSVTVVIFLVSEVFAVLQLGTAASLSSALLPKWHIHVVNGLSKVTLFVHCKSKDD 60

Query: 61  ---------------------------------KPNFKVSFESFWVESTHPWLASRCFDK 104
                                            KPN  VSFESFWVE TH WL  RC DK
Sbjct: 61  DLGVHNLVTRGDEFQWTFQVNFWATTLYWCYLKKPNADVSFESFWVEQTHMWLQYRCTDK 120

[Close]

BLAST of ClCG09G009358 vs. ExPASy TrEMBL
Match: A0A6J1DPJ1 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022329 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 55/137 (40.15%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 10  VVLFLVVATMAMVQLCAAVPLPLPRWHIHVVNGLNNETLL-------------------- 69
           +V ++V+  +    +   +P+PL +W+IHVVNGL+N   L                    
Sbjct: 4   LVFWVVLVVVRPGVVALHLPMPLDKWNIHVVNGLSNNATLFVHCKSKDDDLGYHHLIGRG 63

Query: 70  ----------------------KPNFKVSFESFWVESTHPWLASRCFDKNCIWIAKDDGI 105
                                 KPN  VSF+SFWVE TH WL  RC D  CIW AKDDGI
Sbjct: 64  DELQWTFRINFWKTTLYWCFMHKPNADVSFDSFWVEKTHIWLTYRCKDGICIWTAKDDGI 123

[Close]

BLAST of ClCG09G009358 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 44.7 bits (104), Expect = 5.5e-05
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 0


Query: 69  LASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 104
           L  RC  KNC+W AK+DG+YL N+ I  D L  +W
Sbjct: 113 LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]

BLAST of ClCG09G009358 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 44.3 bits (103), Expect = 7.2e-05
Identity = 22/54 (40.74%), Postives = 28/54 (51.85%), Query Frame = 0


Query: 50  KPNFKVSFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 104
           K N  ++   FW +     L  RC  KNCIW AK DG+YL N+    D L  +W
Sbjct: 97  KDNGHMNVNVFWDDVI---LFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKW 147

The following BLAST results are available for this feature:

BLAST of ClCG09G009358 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067970.1	2.4e-34	53.06	uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa]	[more]
XP_008461539.1	9.1e-34	53.06	PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo]	[more]
XP_008462114.1	1.3e-32	55.00	PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo]	[more]
XP_004139722.1	2.2e-32	54.93	S-protein homolog 1-like [Cucumis sativus]	[more]
KAE8646232.1	9.7e-28	54.14	hypothetical protein Csa_016625, partial [Cucumis sativus]	[more]

BLAST of ClCG09G009358 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HQ46	7.8e-04	51.43	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]

BLAST of ClCG09G009358 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL75	1.2e-34	53.06	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00...	[more]
A0A1S3CEQ0	4.4e-34	53.06	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500111 PE=3 SV=1	[more]
A0A1S3CG89	6.4e-33	55.00	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500542 PE=3 SV=1	[more]
A0A6J1CPC6	4.1e-24	44.90	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1	[more]
A0A6J1DPJ1	3.4e-18	40.15	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111022329 PE=3 SV=1	[more]

BLAST of ClCG09G009358 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29035.1	5.5e-05	51.43	Plant self-incompatibility protein S1 family	[more]
AT4G16295.1	7.2e-05	40.74	S-protein homologue 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 71..103 e-value: 1.3E-4 score: 22.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G009358.1	ClCG09G009358.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane