ClCG09G003700 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG09G003700
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTransmembrane protein, putative
LocationCG_Chr09: 3231091 .. 3231366 (+)
RNA-Seq ExpressionClCG09G003700
SyntenyClCG09G003700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATTATGGAGATTAGTCATTTGGAAGGAATGCTAGCGACTGCTGCCGTGTTCGTCCTTGTGCAGATTCTAGTCTATCTAATTCTCTCTAAATCTTCCCAAGTCTTCTCTAAGAACACGAACAGGTCTCTCAGTTTTCGACGCGTTCAATCTCTGAGTATTTGTCGGATTATTGAAGCTCTCTCCGATTTTCCCTCCGATGGCGAGGCATCTCCTTCTCCAAAAGAATGTCATGGAGAATGTGAAACGGTGTTCGAAGAAGGCAGTTTGTAA

mRNA sequence

ATGATGATTATGGAGATTAGTCATTTGGAAGGAATGCTAGCGACTGCTGCCGTGTTCGTCCTTGTGCAGATTCTAGTCTATCTAATTCTCTCTAAATCTTCCCAAGTCTTCTCTAAGAACACGAACAGGTCTCTCAGTTTTCGACGCGTTCAATCTCTGAGTATTTGTCGGATTATTGAAGCTCTCTCCGATTTTCCCTCCGATGGCGAGGCATCTCCTTCTCCAAAAGAATGTCATGGAGAATGTGAAACGGTGTTCGAAGAAGGCAGTTTGTAA

Coding sequence (CDS)

ATGATGATTATGGAGATTAGTCATTTGGAAGGAATGCTAGCGACTGCTGCCGTGTTCGTCCTTGTGCAGATTCTAGTCTATCTAATTCTCTCTAAATCTTCCCAAGTCTTCTCTAAGAACACGAACAGGTCTCTCAGTTTTCGACGCGTTCAATCTCTGAGTATTTGTCGGATTATTGAAGCTCTCTCCGATTTTCCCTCCGATGGCGAGGCATCTCCTTCTCCAAAAGAATGTCATGGAGAATGTGAAACGGTGTTCGAAGAAGGCAGTTTGTAA

Protein sequence

MMIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEALSDFPSDGEASPSPKECHGECETVFEEGSL
Homology
BLAST of ClCG09G003700 vs. NCBI nr
Match: XP_022954080.1 (uncharacterized protein LOC111456452 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 2  MIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEA 61
          M+MEI HLEGM  TAAVF+LVQILVYLILSKSS VFSKNT RSLSFR+V+SLSI RI+ A
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 62 LSDFPSDGEASPSPKECHGECETVFEEGS 91
          LSDFPS    +  P E  GEC T+F+EGS
Sbjct: 61 LSDFPS---GTGDPDESRGECGTMFDEGS 86

BLAST of ClCG09G003700 vs. NCBI nr
Match: KAG6575656.1 (hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014206.1 hypothetical protein SDJN02_24381, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 2  MIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEA 61
          M+MEI HLEGM  TAAVF+LVQILVYLILSKSS VFSKNT RSLSFR+V+SL+I RI+ A
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAA 60

Query: 62 LSDFPS-DGEASPSPKECHGECETVFEEGS 91
          LSDFPS DG+    P E  GEC T+F+EGS
Sbjct: 61 LSDFPSGDGD----PDESRGECGTMFDEGS 86

BLAST of ClCG09G003700 vs. NCBI nr
Match: XP_023548863.1 (uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 9.8e-21
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 2  MIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEA 61
          M+MEI HLEGM  TAAVF+LVQILVYLILSKSS VFSKNT RSLSFR+V+SL+I RI+ A
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAA 60

Query: 62 LSDFPSDGEASPSPKECHGECETVFEEGS 91
          LSDFPS    +  P E  GEC T+F+EGS
Sbjct: 61 LSDFPS---GTGDPDESRGECGTMFDEGS 86

BLAST of ClCG09G003700 vs. NCBI nr
Match: XP_022147203.1 (uncharacterized protein LOC111016209 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 8.3e-20
Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 1  MMIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIE 60
          MM MEI  LEG++ATAAVF LVQILVYLILSKSS VFSKNT RSLSFR V+SLSI RI+ 
Sbjct: 1  MMTMEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA 60

Query: 61 ALSDFPSDGE-----ASPSPKECHGECETVFEEGS 91
          ALSD PS GE      SPSP    GEC  +F +GS
Sbjct: 61 ALSDVPSGGEPSPPNESPSPFSIGGECAAMFRDGS 95

BLAST of ClCG09G003700 vs. NCBI nr
Match: XP_038898457.1 (uncharacterized protein LOC120086089 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 1  MMIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIE 60
          MM+MEISH +GM+ATAAVF+LVQILVYLILSKSSQVFSK  NRSLSFR+VQSLS  RII+
Sbjct: 1  MMMMEISHFQGMVATAAVFILVQILVYLILSKSSQVFSKKMNRSLSFRQVQSLS--RIIK 60

Query: 61 ALSDFPSDGEASPSPKECHGECETVFEEGS 91
           LSDFPS  ++S          ET F+EGS
Sbjct: 61 PLSDFPSSSDSS----------ETTFDEGS 78

BLAST of ClCG09G003700 vs. ExPASy TrEMBL
Match: A0A6J1GRF7 (uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC111456452 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 2  MIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEA 61
          M+MEI HLEGM  TAAVF+LVQILVYLILSKSS VFSKNT RSLSFR+V+SLSI RI+ A
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 62 LSDFPSDGEASPSPKECHGECETVFEEGS 91
          LSDFPS    +  P E  GEC T+F+EGS
Sbjct: 61 LSDFPS---GTGDPDESRGECGTMFDEGS 86

BLAST of ClCG09G003700 vs. ExPASy TrEMBL
Match: A0A6J1D0M4 (uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016209 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.0e-20
Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 1  MMIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIE 60
          MM MEI  LEG++ATAAVF LVQILVYLILSKSS VFSKNT RSLSFR V+SLSI RI+ 
Sbjct: 1  MMTMEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILA 60

Query: 61 ALSDFPSDGE-----ASPSPKECHGECETVFEEGS 91
          ALSD PS GE      SPSP    GEC  +F +GS
Sbjct: 61 ALSDVPSGGEPSPPNESPSPFSIGGECAAMFRDGS 95

BLAST of ClCG09G003700 vs. ExPASy TrEMBL
Match: A0A6J1JXQ0 (uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 2  MIMEISHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEA 61
          M+MEI HLEGM  TAAVF+LVQILVYLILSKSS VFSKNT RSLSFR+V+SLSI RI+ A
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 62 LSDFPSDGEASPSPKECHGECE 84
          LSDFPS    +  P E  G  E
Sbjct: 61 LSDFPS---GAGDPDESRGNVE 79

BLAST of ClCG09G003700 vs. ExPASy TrEMBL
Match: A0A371I8K6 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_03975 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.0e-12
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 7  SHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEALSDFP 66
          S L  ML   AVFVLVQ LVYLILS SS +FSKN  R+ SF+  +SLSI R++  +SDFP
Sbjct: 3  STLGDMLVKVAVFVLVQALVYLILSNSSNIFSKNMKRTQSFKPARSLSIRRMLALISDFP 62

Query: 67 SDGEASPSPKE 78
           +GE SPSPKE
Sbjct: 63 PEGEPSPSPKE 73

BLAST of ClCG09G003700 vs. ExPASy TrEMBL
Match: V7BSW8 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G042200g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 7  SHLEGMLATAAVFVLVQILVYLILSKSSQVFSKNTNRSLSFRRVQSLSICRIIEALSDFP 66
          S L  ML    VFVLVQ LVYLILS SS +FSKN  RS SFR  +S+SI R++  +SDFP
Sbjct: 3  SSLGDMLIKVGVFVLVQALVYLILSNSSNIFSKNIKRSNSFRPARSVSIRRMLALISDFP 62

Query: 67 SDGEASPSPK 77
          S+GE SPSPK
Sbjct: 63 SEGEPSPSPK 72

BLAST of ClCG09G003700 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 10 EGMLATAAVFVLVQILVYLILSKSSQVF--SKNTNRSLSFRRVQSLSICRIIEALSDFPS 69
          EGML   ++F L+Q LVYLILSKSS VF  SK   R+ SFR  +S+SI RI+  L D P+
Sbjct: 6  EGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPA 65

Query: 70 DGEASPS 75
           GE SPS
Sbjct: 66 GGEMSPS 72

BLAST of ClCG09G003700 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-08
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 12 MLATAAVFVLVQILVYLILSKSSQVFSKNTN--RSLSFRRVQSLSICRIIEALSDFPSDG 71
          ML   A+F LVQ LVYLIL KSS+VF+++ +  R+ SFR ++S+SI RI+ AL D P+  
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 72 EASPS 75
          + SPS
Sbjct: 68 DMSPS 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022954080.14.4e-2171.91uncharacterized protein LOC111456452 [Cucurbita moschata][more]
KAG6575656.15.7e-2172.22hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548863.19.8e-2170.79uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo][more]
XP_022147203.18.3e-2068.42uncharacterized protein LOC111016209 [Momordica charantia][more]
XP_038898457.12.0e-1868.89uncharacterized protein LOC120086089 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GRF72.1e-2171.91uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC1114564... [more]
A0A6J1D0M44.0e-2068.42uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1JXQ04.2e-1770.73uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440... [more]
A0A371I8K69.0e-1261.97Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_03975 P... [more]
V7BSW81.5e-1162.86Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G042200g PE=4 ... [more]
Match NameE-valueIdentityDescription
AT1G05575.13.4e-1156.72unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... [more]
AT2G31945.13.5e-0852.31unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34268OS01G0321850 PROTEINcoord: 4..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G003700.2ClCG09G003700.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane