ClCG09G000050 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG09G000050
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Nuclear pore complex protein NUP35
Location	CG_Chr09: 86978 .. 91417 (-)
RNA-Seq Expression	ClCG09G000050
Synteny	ClCG09G000050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCAGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGCCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTGATTCAACCTGGTGCACTAATCACACTTCCAACCCCAAGGGAAGTTGCCAGACCGGAAGTGCAGAGAAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGGTTACTGTCTATGGGTGAGTTCTCTATTCCCTTTCACCCCTCTCATTCATCATCATTACCTGAGATTTTTGTTGTCGGTTGAACTTTGAATGATTCATTTACCATCTTAGAGTTGTTATGCCCTATTGATTTCAGATGTTTTTATTATGTTAAACAGCCGATCATTTTTCTTTCAAGTCATCTTGGAATTTCCTAAATCATGATGAAGATTATTACATTTGTTTTAGTTGTATATGGTTTATGCAGTCTTGCCTTGCCATTTCTCTTGGATGCATCTCTCTCTCTCTCACACACACTCATACTTCACCCCTACACATGATAACATGCTCATGTATTGAGCATCGTTTCAATTAATCACTGACATTTAACATCTTCATTTGGAAGTGTTGTAAGCCTGTCATTTTACCTTGGTTTCCTTCTTGTTGAAATGAATGAGCATGCTTCAATTTTCTGGCATGTAAGGAGGTACCTAGCTGCCTTAGATTTACCTCGGTAGCAATGCTGTTGGTTTTGATATACACAATTTAAACTTTTAGTATTTTGTATTTGATAAGAACTGTGTTTTAAAAGGCCCATTCAGGCGCGCGCCTAGGCTCAAGGCACAGGTATGGCGCCTCGCCTTTCAAGACGAGGCTTGCAAAATAAGGCGTGCCTCAGGCGCGTGCCTTTTTTGAAGCCCCTAGGCTCAAAAGCCCTCGGCCTTGGGGCTTTTTCATTATTTTTAAAAATAGTAATAATTAAAGGTTTTTCTTCCTTATTAACTAAAAGAATCAAGTTTACTAAGCCTAAATGCAAAATTTCTTGTGTTTGGGGTCTTTTCTTTAACATATATCCACTTCAACTATGCTCTCTTTTTATTGCAATACTTTTATATATAGTGCGCCTCACAGAAAAAGCCCGTGTCTTTTTGTGCGCCTTGCGTATAGGCTCCAGAGGGCCATTGTGGCTTAGTGCGCCTTGGGCATTTAAAAACACTGGATATGAAGCAATGCTGTTATTGATTCCAATGTTCTTTCTTATTTGTATAATTTTGTGCCTTCTTTCTTCAGATTCTCTCCTGCTGATACAAATCTAGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAATTGGATGCACATTCTTTATCAGGTACCAATCTACCTACATTTACCTGCTTTATTCGACTATGTTTTTCTCGATTTGACGTTCTTTTTCTTTTAGACACATTCAGTCAATCTGTCATTTGAAATCGGAATGGCTTTGTTGCTAGTTGGTAAAATTTGGGAACTTGATAATTATGTATTAATTTTTATGAAAATAAATGTGCAACACTTGTTTTTGGATGCTAGGAAAGGTATTAGATTTCAAGTCTTTAAAATTATAGTTGTTTTTTTTATTGAGTTCTCAAGTTGGCTAGTTAGGTTTAAGATTTAATTGACACCTGCTGAGCGTTTTGTTTGGATATTGACCTCATCAAATCAACACACACACATATATATACACATATATATATATACACACACATATATACACACACATATATATATATACACACACATATATATGGGAAATTATTTTAAATGACAAAATTGTTGAAAATATTTACAAATAATAGCAAAATATCACAGTCCATCTGCGATATACCACGATAGATCACGATAGACTACTATTTGTGTCTATCATGATACAAATAGACATAGATAGTAGTCTATCGCGGTCTATTGCAGATAGATAGTAAAATTTTGTATATTTGTAAATATTTTGGTTCATTTTTCTATATTTGAAAATAACCCTATATATATATATTATATTAAGTATATGTAACTCATATGATGTCAATATATGAGTAGGAAGATGCTATATTCAACATCTTAGAAAACTATTTGCGTTACGAATATGTTGTTTCTTTTGTTGCTGGTGCAGAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGAGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCACCGGCAGGCACTAGAGGAAAAATTAAACAACCCAGGATTCATGGTTACCCCACCGGTATCTTCTCGAACCACAGAACTCCTTGCAACGAGAGGGCCGTCGCGTTCCTACAATCTTCAAAATGGTAACAGTAGTGCACGGCAGTCAGGAGGTACCATTGCTTCGCCATCCAAATCATTAGTATCTAAGGTCATGGATTTGATGTTTGGAGTCTAAGTTATCTCCTCTCTCAATATCGACTTTCTGTGGCAAGAAATTCCTAAAACTTTGAGAGCATACACATTGAGTTGGCATGATATGTTATAGGTTGTTTTAACTGTGTACAATGTTCACAGTCCTCCATCTTGATACTTGTGATTGTTTTTCCTGATTCTTACTCTTACAAAATGAGACAGAGGGAAATGAACATGATGCTGGAACTTTTTTTGGGCCCTTGAGAACCAACAAATATCGAAACCAGGTATAAAGTATATTTCCAATTCCCACCCCGTTAAACATCACCCTCAACCCCCCAACAAGTGGAGTGGGAACTTTTACAATAGATTGAAATTCTTATCCTCTGTTTCATTCTTGTTTTGGGGAAATTGAAAAATCGGTTCCATGAATAGGTCGCTTGTAGTTCCTTTCTCATTTAATTTTTTTAAAAGACATGTTGATGAGATATTTAAGCATGCATTGGTAATAAGAATGATTCAAATTACCCAGCCTGTTTGAAATGAGTTTTTAAGTGAAAAAGTTGACCAGTGGCTGGTTTCAAAACTATCATAAATTTAATGTAAACTCTCTTTTAGTTAATTTGTATGTATTAAAGAACAAAGATGTGGAGAAAAGGATTACTTTTTAGTGCTTGAGTTTTTGGAAATAGGTGCATTTAGTCCAAAAGATTTTAGGAAAAATACCATTTTGGTCCCTGAATTTTCAAGAATGTGTGCATTTGGTTCCTATATTTCAAATTAGTCATTTTAGTCTTTTAATTTTTAAGAATATGTTTAATAAAAGGACCTACTTTTAAATTTATTGAATTTAAACATAATATTGACTTGATGGTGATGTGGCAAGTTGAGTTGGAATAAAATATATTATTTTTAATCTCTCTCCTCTCTCTCTCCTCTTCTCTCTCTTTTTCTCTCCTCCCCGGTATCTTCTCCTTCATTTCAATCATGGCGAATGGGACCGTGGAAGCGGGAATCTTTTCGATTGAATTTGATACCAAAAAGAATTTTCTAGAGGATGTTGGGAACCATGTGGGGTTGGGTTTGAATGGGGTTTACTCCGTTTAGCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGGTGGATGTTTTCGTTAGAGTTCAAGGTGTTCGTTTCTTTGTTGTCAAGCTTAGAAGATCAATTGGAAAACATAGTGATTTTTCATACCCTTGATCTCTCTTTTCTTCCTGATGAGGTTTATGTTGGCTTCTCTGCTTCAAAATTCGACTTTAATTCACAGTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

mRNA sequence

ATGAACACCACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCAGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGCCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTGATTCAACCTGGTGCACTAATCACACTTCCAACCCCAAGGGAAGTTGCCAGACCGGAAGTGCAGAGAAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGGTTACTGTCTATGGATTCTCTCCTGCTGATACAAATCTAGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAATTGGATGCACATTCTTTATCAGAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGAGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCACCGGCAGGCACTAGAGGAAAAATTAAACAACCCAGGATTCATGGTTACCCCACCGGTATCTTCTCGAACCACAGAACTCCTTGCAACGAGAGGGCCGTCGCGTTCCTACAATCTTCAAAATGGTAACAGTAGTGCACGGCAGTCAGGAGAGGGAAATGAACATGATGCTGGAACTTTTTTTGGGCCCTTGAGAACCAACAAATATCGAAACCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGGTGGATGTTTTCTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Coding sequence (CDS)

ATGAACACCACTGTGCATAGAACTCCCAATTCTGGGAGGCAGTCATTGTTCTACCAAGATTTAGCATCTCCTGTTACGACGCGGAAAGGGAAATTTTCAACTCCAGGTCAGGCAGCTGCTGTATCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTTCCTCCTCCTCCGGTTTTCACCTTGGAAGACCGCTCGGGCTCAGATTTTTCTCCTGAGTCTGGGATTCCTGATTATCCAGTTTCCCCAGAAATTAAATCAGACCCAAGGACCCCTATCCAAAGTCACGACTTCTCTTCGCCGATGAAAAACAAGTCAAATGCCAGCACTTCATACACACCAATTAGTGGACAACAAAGCCGGCAGGGATCAGCTGGCTTTAGTTGGTGGTCAACATCGAAAGGTGGTGGGAGCGAGCAAGAAGATAAGGGAAAAAGTTCACCAGTCGAAGGTGTGATTCAACCTGGTGCACTAATCACACTTCCAACCCCAAGGGAAGTTGCCAGACCGGAAGTGCAGAGAAATTGCTTGCCTGCAGCAAAACTCAATGAGGAGGAATGGGTTACTGTCTATGGATTCTCTCCTGCTGATACAAATCTAGTTTTGAGGGAATTTGAAAAATGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAATTGGATGCACATTCTTTATCAGAACCGATCTGATGCTCACAGGGCTCTCAACAAAAATGGTATTCAAATTAATGGAGTGCTAATTGTTGGTGTGAAACCAGTGGACCCAATGCACCGGCAGGCACTAGAGGAAAAATTAAACAACCCAGGATTCATGGTTACCCCACCGGTATCTTCTCGAACCACAGAACTCCTTGCAACGAGAGGGCCGTCGCGTTCCTACAATCTTCAAAATGGTAACAGTAGTGCACGGCAGTCAGGAGAGGGAAATGAACATGATGCTGGAACTTTTTTTGGGCCCTTGAGAACCAACAAATATCGAAACCAGAAGCCGTCGTCGGAATTTGGAGTCAACCTTTCGGCTACAGGGTTTACTCTGTTTAGCAGAAGCCATGGTCGGAATTTGGAGTCAACCTTTCGACTATGGGGTTTACTCTGTTTAGCAGAAGCCATTTTCGGAATTTGGAGTCAACCTTTCGGCTATGGTGGATGTTTTCTTAAACGAAAAAAGGATCTAGAAGAAGCATTTGATGATGGTATAGAAGATCAGCTTCAAGATTCCAACATAGCACGACGAGTTCAAAAGTTCGGATTCAAAGAACTAAAGAAGGCAATGGATAATTTCGACCCGAATAACAAGTTGGGGAAAAGGCAGATTTGGAACCGTTTACAAAGGAAATTTGAAAAGCAGAGAGGTCAGGGTGAGGAGAATCTCAGAGGATTCTCGTCAAGGGAAGCAGGCTGGGATTAA

Protein sequence

MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQNGNSSARQSGEGNEHDAGTFFGPLRTNKYRNQKPSSEFGVNLSATGFTLFSRSHGRNLESTFRLWGLLCLAEAIFGIWSQPFGYGGCFLKRKKDLEEAFDDGIEDQLQDSNIARRVQKFGFKELKKAMDNFDPNNKLGKRQIWNRLQRKFEKQRGQGEENLRGFSSREAGWD

Homology

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BLAST of ClCG09G000050 vs. NCBI nr
Match: XP_038900103.1 (nuclear pore complex protein NUP35 [Benincasa hispida])

HSP 1 Score: 605.9 bits (1561), Expect = 2.9e-169
Identity = 300/309 (97.09%), Postives = 304/309 (98.38%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNT VHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTIVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRSGSDFSPESGI DYPVSPEIKSDPRTPIQSHDFSSP+KNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSGSDFSPESGIADYPVSPEIKSDPRTPIQSHDFSSPLKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+EKLN+PGFMVTPPVSSRT+ELLATRG  R YNLQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNHPGFMVTPPVSSRTSELLATRGLVRPYNLQN 300

Query: 301 GNSSARQSG 310
           GNSSARQSG
Sbjct: 301 GNSSARQSG 309

[Close]

BLAST of ClCG09G000050 vs. NCBI nr
Match: XP_022151212.1 (nuclear pore complex protein NUP35 [Momordica charantia])

HSP 1 Score: 589.7 bits (1519), Expect = 2.2e-164
Identity = 288/309 (93.20%), Postives = 299/309 (96.76%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTT+HRTPNSGRQS+FYQDLASPVT+RKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTLHRTPNSGRQSMFYQDLASPVTSRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDR  SDFSPESGIPDYP+SPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTP SGQQS
Sbjct: 61  TLEDR--SDFSPESGIPDYPLSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPTSGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEG +QPGALI LPTPREVARPEVQRNC PA 
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGXVQPGALIILPTPREVARPEVQRNCFPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAH+ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NG+QINGVLIVGVKPVDPMHRQAL+EK+NNPGFMV PPV SRTTELLATRGP R+YNLQN
Sbjct: 241 NGVQINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRTTELLATRGPVRTYNLQN 300

Query: 301 GNSSARQSG 310
           GNS+ARQSG
Sbjct: 301 GNSNARQSG 307

[Close]

BLAST of ClCG09G000050 vs. NCBI nr
Match: XP_004141656.1 (nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypothetical protein Csa_015598 [Cucumis sativus])

HSP 1 Score: 587.8 bits (1514), Expect = 8.3e-164
Identity = 290/309 (93.85%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQALEE+LNNPGFMV PPVSSRT+ELLATRGP R YNLQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300

Query: 301 GNSSARQSG 310
           G +SAR SG
Sbjct: 301 GYTSARHSG 309

[Close]

BLAST of ClCG09G000050 vs. NCBI nr
Match: KAA0051033.1 (nuclear pore complex protein NUP35 [Cucumis melo var. makuwa] >TYK03828.1 nuclear pore complex protein NUP35 [Cucumis melo var. makuwa])

HSP 1 Score: 582.8 bits (1501), Expect = 2.7e-162
Identity = 286/309 (92.56%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPI+GQ S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+EKLNNPGFMV PPVSSRT+ELLATRGP R Y+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMRPYSLQN 300

Query: 301 GNSSARQSG 310
           GN+SAR SG
Sbjct: 301 GNTSARHSG 309

[Close]

BLAST of ClCG09G000050 vs. NCBI nr
Match: XP_008462444.1 (PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo])

HSP 1 Score: 580.1 bits (1494), Expect = 1.7e-161
Identity = 285/309 (92.23%), Postives = 296/309 (95.79%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPI+GQ S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+EKLNNPGFMV PPVSSRT+ELLATRGP   Y+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMLPYSLQN 300

Query: 301 GNSSARQSG 310
           GN+SAR SG
Sbjct: 301 GNTSARHSG 309

[Close]

BLAST of ClCG09G000050 vs. ExPASy Swiss-Prot
Match: O04326 (Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 5.3e-113
Identity = 212/314 (67.52%), Postives = 244/314 (77.71%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TL+DR  SDFSPESGI DY  SP+ KSD RTP QS   +  +P K K  AS S++ ++ Q
Sbjct: 61  TLDDR--SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCL 180
           QS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRA 240
           P   L+EEEWVTVYGFSP DTNLVLREFEKCG +LKHVPGPR+ANWMHILYQNRSDAH+A
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYN 300
           LNK G+ INGV+IVGVKPVDP+ +QAL E+LNN GFM  PP SS        R  SR   
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQY 300

Query: 301 LQNGNSSARQSGEG 312
           LQNG++ + Q   G
Sbjct: 301 LQNGSAFSPQPSGG 309

[Close]

BLAST of ClCG09G000050 vs. ExPASy Swiss-Prot
Match: Q66IJ0 (Nucleoporin NUP35 OS=Xenopus tropicalis OX=8364 GN=nup35 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-15
Identity = 81/283 (28.62%), Postives = 128/283 (45.23%), Query Frame = 0


Query: 9   PNSGRQSL---FYQDLASPVTTRKGKFSTPGQAAAVSAL-WRENFGNSDLPPPPVF-TLE 68
           P++G Q L      D+ +PV        TP Q  ++  +  R    +   PP PV  T +
Sbjct: 24  PSAGAQFLPGFLLGDIPTPV--------TPQQRPSIGVMEMRSPLLSGGSPPQPVVPTHK 83

Query: 69  DRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFS---SPMKNKSNASTSYTPISGQQS 128
           D+SG+   P   I D   SP + S P  P ++  FS   +P+     +S     ISG + 
Sbjct: 84  DKSGA--PPVRSIYDDIASPGLGSTPLNPRKTASFSVLHTPLSGVIPSSPECKNISGSRK 143

Query: 129 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 188
           R  S+ F   S +  G S +                   T  +P ++     Q + L + 
Sbjct: 144 RPASSVF---SPATIGHSRK-------------------TTLSPAQMDPFYTQGDALTSD 203

Query: 189 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 248
              ++ WVTV+GF  A  + +L +F + G I+KHV    + NWMHI YQ++  A +AL+K
Sbjct: 204 DQLDDTWVTVFGFPQASASYILLQFAQYGNIIKHVMS-NNGNWMHIQYQSKLQARKALSK 263

Query: 249 NGIQINGVLIVGVKPVDPMHRQALEEKLNNP--GFMVTPPVSS 282
           +G      +++GVKP          EK++ P    + TPPV +
Sbjct: 264 DGRIFGESIMIGVKPCIDKSVMEATEKVSTPTVSSVFTPPVKN 273

[Close]

BLAST of ClCG09G000050 vs. ExPASy Swiss-Prot
Match: Q8NFH5 (Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.5e-14
Identity = 76/267 (28.46%), Postives = 118/267 (44.19%), Query Frame = 0


Query: 20  DLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDY 79
           DL +PVT +    S  G +  V  +          P P V   +D+SG+   P   I D 
Sbjct: 42  DLPAPVTPQPRSIS--GPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGA--PPVRSIYDD 101

Query: 80  PVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSE 139
             SP + S P T           + + N S   +P+ G  S  G+ G S +S +  G   
Sbjct: 102 ISSPGLGSTPLT----------SRRQPNISVMQSPLVGVTSTPGT-GQSMFSPASIG--- 161

Query: 140 QEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWVTVYGFSPADTN 199
                   P +  + P  L    T         Q + L +    ++ WVTV+GF  A  +
Sbjct: 162 -------QPRKTTLSPAQLDPFYT---------QGDSLTSEDHLDDSWVTVFGFPQASAS 221

Query: 200 LVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGIQINGVLIVGVKP-VDP 259
            +L +F + G ILKHV      NWMHI YQ++  A +AL+K+G      +++GVKP +D 
Sbjct: 222 YILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDK 273

Query: 260 MHRQALEE-KLNNPGFMVTPPVSSRTT 285
              ++ +   L++P    TPP+ +  T
Sbjct: 282 SVMESSDRCALSSPSLAFTPPIKTLGT 273

[Close]

BLAST of ClCG09G000050 vs. ExPASy Swiss-Prot
Match: Q6P6X9 (Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-13
Identity = 79/282 (28.01%), Postives = 122/282 (43.26%), Query Frame = 0


Query: 8   TPNSGRQSL---FYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLED 67
           +P  G Q L      DL +PVT +   F   G A   S L          P P V T +D
Sbjct: 17  SPKPGAQFLPGFLMGDLPAPVTPQPRSFGLTGGAEIRSPL----LAGGSPPQPVVPTPKD 76

Query: 68  RSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPM-KNKSNASTSYTPISGQQSRQG 127
           +SG              +P ++S       S    SP+   K   +  +TP+SG Q   G
Sbjct: 77  KSG--------------APPVRSIYDDLNGSAVGMSPLAARKQPFAGVHTPLSGLQGTPG 136

Query: 128 SAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLN 187
           +    +   S      Q+ K                T  +P +V     Q + L +    
Sbjct: 137 TVSNFFSPVS------QQRK----------------TTLSPAQVDPFFTQGDALSSEDQL 196

Query: 188 EEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGI 247
           ++ W+TV+GF PA  + +L +F + G ILKHV      NWMH+ YQ++  A +AL+K+G 
Sbjct: 197 DDTWITVFGFPPASASYILLQFAQYGNILKHVMS-NTGNWMHVQYQSKLQARKALSKDGK 256

Query: 248 QINGVLIVGVKP-VDPMHRQALEEKLNNPGFMVTPPVSSRTT 285
                +++GVKP +D    ++L +K +    + TPPV +  T
Sbjct: 257 IFGEAIMIGVKPCIDKSVMESL-DKGSTSSSVFTPPVKAPCT 256

[Close]

BLAST of ClCG09G000050 vs. ExPASy Swiss-Prot
Match: Q68FY1 (Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.8e-13
Identity = 73/269 (27.14%), Postives = 113/269 (42.01%), Query Frame = 0


Query: 20  DLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDY 79
           DL +PVT +    S  G +  V  +          P P V   +D+SG+   P   I D 
Sbjct: 42  DLPAPVTPQPRSIS--GPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGA--PPVRSIYDD 101

Query: 80  PVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQSRQGSAGFSWWSTSKGGGSE 139
             SP + S P           P + ++N S   +P+ G             +T   G S 
Sbjct: 102 ISSPGLGSTP----------LPSRRQANISVLQSPLVGV------------TTPVTGQSM 161

Query: 140 QEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAAKLNEEEWVTVYGFSPADTN 199
                   P +  + P  L    T         Q + L +    ++ WVTV+GF  A  +
Sbjct: 162 FSPANIGQPRKTTLSPAQLDPFYT---------QGDSLTSEDHLDDTWVTVFGFPQASAS 221

Query: 200 LVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNKNGIQINGVLIVGVKPVDPM 259
            +L +F + G ILKHV      NWMHI YQ++  A +AL+K+G      +++GVKP   +
Sbjct: 222 YILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC--I 272

Query: 260 HRQALEEK----LNNPGFMVTPPVSSRTT 285
            +  +E      L++P    TPP+ +  T
Sbjct: 282 DKNVMENSDRGVLSSPSLAFTPPIRTLGT 272

[Close]

BLAST of ClCG09G000050 vs. ExPASy TrEMBL
Match: A0A6J1DCV4 (Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC111019186 PE=3 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 1.1e-164
Identity = 288/309 (93.20%), Postives = 299/309 (96.76%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTT+HRTPNSGRQS+FYQDLASPVT+RKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTLHRTPNSGRQSMFYQDLASPVTSRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDR  SDFSPESGIPDYP+SPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTP SGQQS
Sbjct: 61  TLEDR--SDFSPESGIPDYPLSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPTSGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEG +QPGALI LPTPREVARPEVQRNC PA 
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGXVQPGALIILPTPREVARPEVQRNCFPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAH+ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NG+QINGVLIVGVKPVDPMHRQAL+EK+NNPGFMV PPV SRTTELLATRGP R+YNLQN
Sbjct: 241 NGVQINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRTTELLATRGPVRTYNLQN 300

Query: 301 GNSSARQSG 310
           GNS+ARQSG
Sbjct: 301 GNSNARQSG 307

[Close]

BLAST of ClCG09G000050 vs. ExPASy TrEMBL
Match: A0A0A0K7B2 (Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE=3 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 4.0e-164
Identity = 290/309 (93.85%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPISGQQS
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQALEE+LNNPGFMV PPVSSRT+ELLATRGP R YNLQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300

Query: 301 GNSSARQSG 310
           G +SAR SG
Sbjct: 301 GYTSARHSG 309

[Close]

BLAST of ClCG09G000050 vs. ExPASy TrEMBL
Match: A0A5A7U592 (Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00200 PE=3 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 1.3e-162
Identity = 286/309 (92.56%), Postives = 297/309 (96.12%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPI+GQ S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+EKLNNPGFMV PPVSSRT+ELLATRGP R Y+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMRPYSLQN 300

Query: 301 GNSSARQSG 310
           GN+SAR SG
Sbjct: 301 GNTSARHSG 309

[Close]

BLAST of ClCG09G000050 vs. ExPASy TrEMBL
Match: A0A1S3CH09 (Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 8.4e-162
Identity = 285/309 (92.23%), Postives = 296/309 (95.79%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTPNSG +SLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDPRTPI+ HDFSSP KNKSNASTSYTPI+GQ S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQGSAGFSWWSTSKGGGSE+EDKGKSSPVEGVIQPGALITLPTPREVARPEV+RNCLP A
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILYQNRSDA +ALNK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQINGVLIVGVKPVDPMHRQAL+EKLNNPGFMV PPVSSRT+ELLATRGP   Y+LQN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMLPYSLQN 300

Query: 301 GNSSARQSG 310
           GN+SAR SG
Sbjct: 301 GNTSARHSG 309

[Close]

BLAST of ClCG09G000050 vs. ExPASy TrEMBL
Match: A0A6J1JYW9 (Nuclear pore complex protein NUP35 OS=Cucurbita maxima OX=3661 GN=LOC111488673 PE=3 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 3.6e-157
Identity = 278/309 (89.97%), Postives = 289/309 (93.53%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRT NSGRQSLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPISGQQS 120
           TLEDRSGSDFSPESGIPDYPVSPE+KSDP TPIQSHDFSSPMK+KSNASTS+TPIS QQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNASTSHTPISAQQS 120

Query: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180
           RQ SAGFSWWST KGGGSEQEDKGKSSPVEGVIQPGALITL TPREVARPEVQRNCLPA 
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILY+NRS AH+AL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYNLQN 300
           NGIQING+LIVGVKPVDP+ RQ L+EKLNNPGFMV PPVSSRT EL    GP R YN QN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GNSSARQSG 310
           GNS ARQSG
Sbjct: 301 GNSYARQSG 309

[Close]

BLAST of ClCG09G000050 vs. TAIR 10
Match: AT3G16310.1 (mitotic phosphoprotein N' end (MPPN) family protein )

HSP 1 Score: 409.5 bits (1051), Expect = 3.8e-114
Identity = 212/314 (67.52%), Postives = 244/314 (77.71%), Query Frame = 0


Query: 1   MNTTVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRTP SGRQSL +QDLASPV+ R+GKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEIKSDPRTPIQS--HDFSSPMKNKSNASTSYTPISGQ 120
           TL+DR  SDFSPESGI DY  SP+ KSD RTP QS   +  +P K K  AS S++ ++ Q
Sbjct: 61  TLDDR--SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQGSAGFSWWSTSKGGGS-EQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCL 180
           QS+Q S   SWWS SK G S EQ+DKGK SPVEGV+QPGAL+TLP PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PAAKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRA 240
           P   L+EEEWVTVYGFSP DTNLVLREFEKCG +LKHVPGPR+ANWMHILYQNRSDAH+A
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LNKNGIQINGVLIVGVKPVDPMHRQALEEKLNNPGFMVTPPVSSRTTELLATRGPSRSYN 300
           LNK G+ INGV+IVGVKPVDP+ +QAL E+LNN GFM  PP SS        R  SR   
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTRN---TARPLSRPQY 300

Query: 301 LQNGNSSARQSGEG 312
           LQNG++ + Q   G
Sbjct: 301 LQNGSAFSPQPSGG 309

The following BLAST results are available for this feature:

BLAST of ClCG09G000050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900103.1	2.9e-169	97.09	nuclear pore complex protein NUP35 [Benincasa hispida]	[more]
XP_022151212.1	2.2e-164	93.20	nuclear pore complex protein NUP35 [Momordica charantia]	[more]
XP_004141656.1	8.3e-164	93.85	nuclear pore complex protein NUP35 [Cucumis sativus] >KGN45595.1 hypothetical pr...	[more]
KAA0051033.1	2.7e-162	92.56	nuclear pore complex protein NUP35 [Cucumis melo var. makuwa] >TYK03828.1 nuclea...	[more]
XP_008462444.1	1.7e-161	92.23	PREDICTED: nuclear pore complex protein NUP35 [Cucumis melo]	[more]

BLAST of ClCG09G000050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04326	5.3e-113	67.52	Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1...	[more]
Q66IJ0	5.1e-15	28.62	Nucleoporin NUP35 OS=Xenopus tropicalis OX=8364 GN=nup35 PE=2 SV=1	[more]
Q8NFH5	2.5e-14	28.46	Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1	[more]
Q6P6X9	1.6e-13	28.01	Nucleoporin NUP35 OS=Danio rerio OX=7955 GN=nup35 PE=1 SV=1	[more]
Q68FY1	4.8e-13	27.14	Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1	[more]

BLAST of ClCG09G000050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCV4	1.1e-164	93.20	Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC11101918...	[more]
A0A0A0K7B2	4.0e-164	93.85	Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE...	[more]
A0A5A7U592	1.3e-162	92.56	Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CH09	8.4e-162	92.23	Nuclear pore complex protein NUP35 OS=Cucumis melo OX=3656 GN=LOC103500791 PE=3 ...	[more]
A0A6J1JYW9	3.6e-157	89.97	Nuclear pore complex protein NUP35 OS=Cucurbita maxima OX=3661 GN=LOC111488673 P...	[more]

BLAST of ClCG09G000050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16310.1	3.8e-114	67.52	mitotic phosphoprotein N' end (MPPN) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 183..256 e-value: 1.9E-27 score: 97.0
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 182..267 e-value: 7.6E-26 score: 90.0
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 182..263 score: 32.91486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..471
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..311
None	No IPR available	CDD	cd12441	RRM_Nup53_like	coord: 185..258 e-value: 1.99748E-36 score: 126.957
IPR017389	Nucleoporin, NUP53	PANTHER	PTHR21527	NUCLEOPORIN NUP35	coord: 1..317
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 185..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G000050.2	ClCG09G000050.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051028	mRNA transport
biological_process	GO:0006607	NLS-bearing protein import into nucleus
biological_process	GO:0006999	nuclear pore organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0044613	nuclear pore central transport channel
cellular_component	GO:0044615	nuclear pore nuclear basket
molecular_function	GO:0005543	phospholipid binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0017056	structural constituent of nuclear pore
molecular_function	GO:0003676	nucleic acid binding