ClCG08G017900 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G017900
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Plant protein 1589 of unknown function
Location	CG_Chr08: 29947782 .. 29949058 (-)
RNA-Seq Expression	ClCG08G017900
Synteny	ClCG08G017900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTAAATGAGTGCACAAATCAGTCCCATTGTTCAAAGATCCGCTCCATTTCATATGTATGTTAAATTTGGAGACAACGTGGCTTTATGAGTATACACTAAAAACTTATCCATCGCAAGGCTCACAATTCAATCACCCAACAGCTCCGCATATGATTATGTTCACTGCTTTCCAATCTGTATGTTACCCTTTCAATATTATTGTGGCCATTTATTTATTTGATGGCAGCTCTTAAATAATAAATAATAAATAATAAATATTGGGATGATCTACAACCTCACTTCCTTTTTTGTCCCCCTTTCAATTTCACCTATATCTATCAACCATCAGTCTATAGTTGTAATTTGAATGGCACTGGGAAAACAGTAGATTATGAATAATGAGTTATTGGCAGTGACAGGAATTTAAAGAGGTTGTTCATTGTTGGGGCCAAAGGGGAAGAGAGATTAGATTTGTCAAAATCAGTCACCATTATATTGCAATAACCATCCATTCCATACTGCAACTCCATCCTTCTTATCTGCTTGGAGATGGGTTTGGATTTCTTGTGCTCTTTTGGCCCTTCACTCAGATATCTGTGGATAATATTTCTTCCTTCTTTGCTATAAAAAGCTCACAAATATCTTCTCCTGTTTGGCGCTTATGAGGGCTTTTAATTTGTTCTCTTCTCCTATTCTCTGTTTATTGGTTTGGTTTTTTTTTTTCGCTGAATGTACTGGTTTTTGTCCAATTCCTAAGCTAATTTATAAACAGATATACATATATAAATATATACTATGTACAGCCACCAGTTTCTTCCTTGTTTTTATTGCCATCCCCATGCCTATATCCGGATGGTACTGCTAACGTAACTGCTTCTCTCTCTTTCACTCATCTTGCCGTAGTTGCGGTTAAGACTCTGCGCATTATTATTTTGCAGGTCCAACATCTGATAGAGAGATGCTTGCTGTTTCATATGAGTCGAGATGAGTGCGTAAAGGCATTGGCTCACCATGCAAACATTCGCCCTCTCATAACACTTACAGGTCCATACAAACACTTCCTTAACTTTAATTCTTCTCTCTCTTTCTCTAAATCAAATTAATTATTCAATAATCTAATTAAGCTTTTATGGTGTTTTTTTGACCTCCCAGTGTGGAAAGAGCTCCAGAAAGAGAACTCTGAATTCTTCCGGGCATATTTCCATACTATTTCTCCCAACCCATTCCTCGGTATCATCCCTTCTAATTTCACTAAAATAATTATTCAATCAATTCTTGGATGTTTATTCTAA

mRNA sequence

ATGGTTCCACCAGTTTCTTCCTTGTTTTTATTGCCATCCCCATGCCTATATCCGGATGGTACTGCTAACGTCCAACATCTGATAGAGAGATGCTTGCTGTTTCATATGAGTCGAGATGAGTGCGTAAAGGCATTGGCTCACCATGCAAACATTCGCCCTCTCATAACACTTACAGTGTGGAAAGAGCTCCAGAAAGAGAACTCTGAATTCTTCCGGGCATATTTCCATACTATTTCTCCCAACCCATTCCTCGGTATCATCCCTTCTAATTTCACTAAAATAATTATTCAATCAATTCTTGGATGTTTATTCTAA

Coding sequence (CDS)

ATGGTTCCACCAGTTTCTTCCTTGTTTTTATTGCCATCCCCATGCCTATATCCGGATGGTACTGCTAACGTCCAACATCTGATAGAGAGATGCTTGCTGTTTCATATGAGTCGAGATGAGTGCGTAAAGGCATTGGCTCACCATGCAAACATTCGCCCTCTCATAACACTTACAGTGTGGAAAGAGCTCCAGAAAGAGAACTCTGAATTCTTCCGGGCATATTTCCATACTATTTCTCCCAACCCATTCCTCGGTATCATCCCTTCTAATTTCACTAAAATAATTATTCAATCAATTCTTGGATGTTTATTCTAA

Protein sequence

MVPPVSSLFLLPSPCLYPDGTANVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSILGCLF

Homology

[Close]

BLAST of ClCG08G017900 vs. NCBI nr
Match: XP_038884418.1 (uncharacterized protein LOC120075271 isoform X1 [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 6.1e-27
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 24 VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 83
          VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF
Sbjct: 26 VQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 85

Query: 84 L 85
          L
Sbjct: 86 L 86

[Close]

BLAST of ClCG08G017900 vs. NCBI nr
Match: XP_038884419.1 (uncharacterized protein LOC120075271 isoform X2 [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 6.1e-27
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 24 VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 83
          VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF
Sbjct: 26 VQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 85

Query: 84 L 85
          L
Sbjct: 86 L 86

[Close]

BLAST of ClCG08G017900 vs. NCBI nr
Match: XP_008444348.1 (PREDICTED: uncharacterized protein LOC103487701 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 24  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 83
           VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENS+FFRAYFHTISPNPF
Sbjct: 24  VQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVWKELQKENSDFFRAYFHTISPNPF 83

Query: 84  LGIIPSNFTKIIIQSIL 101
           L     +   I+ +  L
Sbjct: 84  LAKFTGSERSIVRRQYL 100

[Close]

BLAST of ClCG08G017900 vs. NCBI nr
Match: XP_004143067.2 (uncharacterized protein LOC101211262 [Cucumis sativus] >KGN62299.1 hypothetical protein Csa_018552 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 66/87 (75.86%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1  MVPPVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITL 60
          M  P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALA HANIRPLITL
Sbjct: 1  MYRPNSHHFL---PCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITL 60

Query: 61 TVWKELQKENSEFFRAYFHTISPNPFL 85
          TVWKELQKENS+FFRAYFHTISPNPFL
Sbjct: 61 TVWKELQKENSDFFRAYFHTISPNPFL 84

[Close]

BLAST of ClCG08G017900 vs. NCBI nr
Match: XP_022961647.1 (uncharacterized protein LOC111462356 isoform X1 [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 65/89 (73.03%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 4  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVW 63
          P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVW
Sbjct: 3  PYSHQFL---PCFHCHPQAYIRKVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVW 62

Query: 64 KELQKENSEFFRAYFHTISPNPFLGIIPS 90
          KELQKEN EFFRAYF TIS +PFL +IPS
Sbjct: 63 KELQKENPEFFRAYFRTISRHPFLSMIPS 88

[Close]

BLAST of ClCG08G017900 vs. ExPASy TrEMBL
Match: A0A1S3BA39 (uncharacterized protein LOC103487701 OS=Cucumis melo OX=3656 GN=LOC103487701 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 24  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 83
           VQHLIERCLL HMSRDECVKALAHHANIRPLITLTVWKELQKENS+FFRAYFHTISPNPF
Sbjct: 24  VQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVWKELQKENSDFFRAYFHTISPNPF 83

Query: 84  LGIIPSNFTKIIIQSIL 101
           L     +   I+ +  L
Sbjct: 84  LAKFTGSERSIVRRQYL 100

[Close]

BLAST of ClCG08G017900 vs. ExPASy TrEMBL
Match: A0A0A0LMP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348860 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.3e-26
Identity = 66/87 (75.86%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1  MVPPVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITL 60
          M  P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALA HANIRPLITL
Sbjct: 1  MYRPNSHHFL---PCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITL 60

Query: 61 TVWKELQKENSEFFRAYFHTISPNPFL 85
          TVWKELQKENS+FFRAYFHTISPNPFL
Sbjct: 61 TVWKELQKENSDFFRAYFHTISPNPFL 84

[Close]

BLAST of ClCG08G017900 vs. ExPASy TrEMBL
Match: A0A6J1HAR0 (uncharacterized protein LOC111462356 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462356 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.6e-26
Identity = 65/89 (73.03%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 4  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVW 63
          P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVW
Sbjct: 3  PYSHQFL---PCFHCHPQAYIRKVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVW 62

Query: 64 KELQKENSEFFRAYFHTISPNPFLGIIPS 90
          KELQKEN EFFRAYF TIS +PFL +IPS
Sbjct: 63 KELQKENPEFFRAYFRTISRHPFLSMIPS 88

[Close]

BLAST of ClCG08G017900 vs. ExPASy TrEMBL
Match: A0A6J1KA89 (uncharacterized protein LOC111492501 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492501 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 65/98 (66.33%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4  PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVW 63
          P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVW
Sbjct: 3  PYSHQFL---PCFHCHPQAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVW 62

Query: 64 KELQKENSEFFRAYFHTISPNPFLGII-----PSNFTK 94
          KELQKEN EFFRAYF TIS +PFL +      P N++K
Sbjct: 63 KELQKENPEFFRAYFRTISRHPFLSMFLPFLPPKNYSK 97

[Close]

BLAST of ClCG08G017900 vs. ExPASy TrEMBL
Match: A0A6J1K802 (uncharacterized protein LOC111492501 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492501 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.9e-24
Identity = 65/100 (65.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 4   PVSSLFLLPSPCLYPDGTA---NVQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVW 63
           P S  FL   PC +    A    VQHLIERCLL HMSRDECVKALAHHANIRPLIT TVW
Sbjct: 3   PYSHQFL---PCFHCHPQAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVW 62

Query: 64  KELQKENSEFFRAYFHTISPNPFLGIIPSNFTKIIIQSIL 101
           KELQKEN EFFRAYF TIS +PFL    + FT+  +  I+
Sbjct: 63  KELQKENPEFFRAYFRTISRHPFL----TKFTRRSVSRIM 95

[Close]

BLAST of ClCG08G017900 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-21
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 24 VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 83
          VQH+IERC+L  M+RDECVKAL HHA+I PL+TLTVW+ LQ+EN +FF  Y H +SP PF
Sbjct: 27 VQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETYGHFVSPRPF 86

Query: 84 L 85
          L
Sbjct: 87 L 87

[Close]

BLAST of ClCG08G017900 vs. TAIR 10
Match: AT1G10657.3 (Plant protein 1589 of unknown function )

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-21
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 24 VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAYFHTISPNPF 83
          VQH+IERC+L  M+RDECVKAL HHA+I PL+TLTVW+ LQ+EN +FF  Y H +SP PF
Sbjct: 27 VQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETYGHFVSPRPF 86

Query: 84 L 85
          L
Sbjct: 87 L 87

[Close]

BLAST of ClCG08G017900 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18
Identity = 37/51 (72.55%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 24 VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFFRAY 75
          VQH+IE+CL+FHMS++ECV+AL+ HANI P+IT TVWKEL+KEN EFF+AY
Sbjct: 13 VQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAY 63

[Close]

BLAST of ClCG08G017900 vs. TAIR 10
Match: AT1G10657.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 84.3 bits (207), Expect = 6.1e-17
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 24  VQHLIERCLLFHMSRDECVKALAHHANIRPLITLT------------------------V 83
           VQH+IERC+L  M+RDECVKAL HHA+I PL+TLT                        V
Sbjct: 27  VQHMIERCILLRMTRDECVKALDHHASILPLVTLTVFSYILGFASVLQKKLHDIFPPPAV 86

Query: 84  WKELQKENSEFFRAYFHTISPNPFL 85
           W+ LQ+EN +FF  Y H +SP PFL
Sbjct: 87  WRGLQRENKDFFETYGHFVSPRPFL 111

[Close]

BLAST of ClCG08G017900 vs. TAIR 10
Match: AT1G10657.4 (Plant protein 1589 of unknown function )

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-16
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 24 VQHLIERCLLFHMSRDECVKALAHHANIRPLITLTVWKELQKENSEFF 72
          VQH+IERC+L  M+RDECVKAL HHA+I PL+TLTVW+ LQ+EN +FF
Sbjct: 27 VQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFF 74

The following BLAST results are available for this feature:

BLAST of ClCG08G017900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884418.1	6.1e-27	98.36	uncharacterized protein LOC120075271 isoform X1 [Benincasa hispida]	[more]
XP_038884419.1	6.1e-27	98.36	uncharacterized protein LOC120075271 isoform X2 [Benincasa hispida]	[more]
XP_008444348.1	1.4e-26	79.22	PREDICTED: uncharacterized protein LOC103487701 [Cucumis melo]	[more]
XP_004143067.2	1.5e-25	75.86	uncharacterized protein LOC101211262 [Cucumis sativus] >KGN62299.1 hypothetical ...	[more]
XP_022961647.1	2.0e-25	73.03	uncharacterized protein LOC111462356 isoform X1 [Cucurbita moschata]	[more]

BLAST of ClCG08G017900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G017900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BA39	6.6e-27	79.22	uncharacterized protein LOC103487701 OS=Cucumis melo OX=3656 GN=LOC103487701 PE=...	[more]
A0A0A0LMP2	7.3e-26	75.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348860 PE=4 SV=1	[more]
A0A6J1HAR0	9.6e-26	73.03	uncharacterized protein LOC111462356 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KA89	1.4e-24	66.33	uncharacterized protein LOC111492501 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K802	8.9e-24	65.00	uncharacterized protein LOC111492501 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of ClCG08G017900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10657.2	5.4e-21	67.21	Plant protein 1589 of unknown function	[more]
AT1G10657.3	5.4e-21	67.21	Plant protein 1589 of unknown function	[more]
AT3G55240.1	1.1e-18	72.55	Plant protein 1589 of unknown function	[more]
AT1G10657.1	6.1e-17	48.24	Plant protein 1589 of unknown function	[more]
AT1G10657.4	4.0e-16	70.83	Plant protein 1589 of unknown function	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 24..74 e-value: 3.8E-26 score: 91.1
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 24..74 e-value: 2.9E-23 score: 79.6
IPR006476	Conserved hypothetical protein CHP01589, plant	PANTHER	PTHR31871	OS02G0137100 PROTEIN	coord: 22..84
None	No IPR available	PANTHER	PTHR31871:SF25	SUBFAMILY NOT NAMED	coord: 22..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G017900.2	ClCG08G017900.2	mRNA