ClCG08G016510 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G016510
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Small VCP/p97-interacting protein
Location	CG_Chr08: 28848734 .. 28850588 (-)
RNA-Seq Expression	ClCG08G016510
Synteny	ClCG08G016510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGGAGATCTTGGGAAAAAACCTGCAACCGCAAGCAAAGCGATGGGGCAATGCGTAAGTTGTCTAGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCTGCTCAGAGAAGGTTATTTCCTTTTCCCTCACTTTAACTTTCTTTCTCAATTTCTGTTCAGCTTTCTCGTCCTTTTTCAATTACAACACCTTTTCACTTTAATTAGGGCTTTCGTTCATCGTTATGTTTTTTCACTCAGTCCCCGTAATTTTTGTTTCTTTTTCTCTTTCTATGAACCTGAATTGTTCAGGTTTGGGATGTAACAGCTCAATTATATTGTAAAAATTCTACAATATAATTAATTTTTCTCTTTTAGTTTAACTACCAATTGTTCCACAGTGGAATGCTTGTTGGATATAAGACAAATAATCGTATAAGAGCTTGTTTGATTAGGGTTTCGCTTTACTTGCCTGTTTGGAAATACTAGTTGATGTACAAATTATGGAACTATTTATAAAAACATTGGTATATTTTCAGAAACTATAGAAGGTACATTTCATAAACTTATTAAAATTAGTCCGAACAGAGGACACAGATAATTACACTTGCTTCCTCCGCCGAGGGTGGAACCTGAGGTCAAACAAACTAACAGCTGCACGCGCGCTAGAGAGTGTTGAAATGTTTTCTGAGAAATATGTAAAATAGAATTTAGATACTGCTAGAATCAAGCTTCTTTTTATTGAAAATAGAAGTTTAAAAAAAAATGAAAAAAAAGTTATCAAGATGAACCTTAGTGTAAGTCAGTCAGTTCAGGTTCAACGAGCTAACTTCTTTTTCCTACAAAATTCTTAGCGTCCAAAAAAAAAAAAAAATAGGACGTAAGCTAGAAAAAGAAGCTACAAGTGCTCTAATTTGAGATGACTGGATTGCACTCACCGATCTTTACCTGAAAAATGCCCTTTGGTATACATTAACTCATACCAAGGATGTAACATCTGTAGTTGGCTGCTCTTGATAATGCATTGAGCTATCTGTTTTAAATTGAAATGGTAATTTCAAATTAGGAACTATGATGTGAATGATACATGTGTTTTATACTGAAAGTAGAATAAATATTTGCAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCCGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCCAACACTAACAAGGGAGAACCAGTTCTAAAGGTCATTGTTTTTCTTGTTTCTTAATTGATTGTTATATGGTCAGTTATATTTAATTTCTTTGTTGTGGTTGATATTGGTGATATAGCTTAACCAATTCCTTTATACTTTCACTCAGAAGAACTTTTTCGCCTTTTAAAACAATTTATTAGAGCACTTCAATGGTAGGCCTTGTTTGCTAACAGTTGTTAATATAGCAAGTGATTTTAAAACTTCTTGTTTTTGTGGATGCAGTGGAGTATGGGGTGAGGTCGTTCTTTATTGTCAGCTTTCACTTCTTTTTCACTGTAAGTGAAATTTCTAAGCAGCTAAAGTGTAATCAGATTTCTGCACGTTATGTTTATCACTGTGAGATTAGTAAAGTTTACCTGATTCCAGGTAAAATTATAATAAGCTCTTCTTCTTGTTCGATTCGTTACTAATAAGCCAATTTCAGTTGTGCAGTGTTAATAAAAGGAAAAGATCGTATATTTATCAGCATTCCTGGGCTCTGCTTGTGCCAAGCAACTTGTCTATACTCCCAACTCCCAAGTCTCCCAAAGGCAGAAGTTATTGAATGGAACTGCAGTCTTGTATTTGTTATTCATGAATCAACGAAACAATAA

mRNA sequence

AATTGGGAGATCTTGGGAAAAAACCTGCAACCGCAAGCAAAGCGATGGGGCAATGCGTAAGTTGTCTAGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCTGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCCGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCCAACACTAACAAGGGAGAACCAGTTCTAAAGCTAAAGTGTAATCAGATTTCTGCACGTTATGTTTATCACTGTGAGATTAGTAAAGTTTACCTGATTCCAGTGTTAATAAAAGGAAAAGATCGTATATTTATCAGCATTCCTGGGCTCTGCTTGTGCCAAGCAACTTGTCTATACTCCCAACTCCCAAGTCTCCCAAAGGCAGAAGTTATTGAATGGAACTGCAGTCTTGTATTTGTTATTCATGAATCAACGAAACAATAA

Coding sequence (CDS)

ATGGGGCAATGCGTAAGTTGTCTAGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCTGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCCGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCCAACACTAACAAGGGAGAACCAGTTCTAAAGCTAAAGTGTAATCAGATTTCTGCACGTTATGTTTATCACTGTGAGATTAGTAAAGTTTACCTGATTCCAGTGTTAATAAAAGGAAAAGATCGTATATTTATCAGCATTCCTGGGCTCTGCTTGTGCCAAGCAACTTGTCTATACTCCCAACTCCCAAGTCTCCCAAAGGCAGAAGTTATTGAATGGAACTGCAGTCTTGTATTTGTTATTCATGAATCAACGAAACAATAA

Protein sequence

MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSANTNKGEPVLKLKCNQISARYVYHCEISKVYLIPVLIKGKDRIFISIPGLCLCQATCLYSQLPSLPKAEVIEWNCSLVFVIHESTKQ

Homology

[Close]

BLAST of ClCG08G016510 vs. NCBI nr
Match: KAG7029301.1 (hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 87/144 (60.42%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 1   MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
           MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1   MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61  QSANTNKGEPVLKL---KCNQIS-ARYVYHCEISKVYLIPVLIKGKDRIFISIPGLCLCQ 120
           QSANTNKGEPVLK     C+ +S A +    E  K+  +  ++               C 
Sbjct: 61  QSANTNKGEPVLKYGVRSCSIVSFASFSLSNEKEKIVYLSAILGSS------------CT 120

Query: 121 ATCLYSQLPSLPKAEVIEWNCSLV 141
              +Y+  P  PKAEVIEWN SL+
Sbjct: 121 KQLVYA--PKSPKAEVIEWNYSLL 130

[Close]

BLAST of ClCG08G016510 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-26
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of ClCG08G016510 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 9.7e-26
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEG+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of ClCG08G016510 vs. NCBI nr
Match: XP_022962383.1 (uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 uncharacterized protein LOC111492013 [Cucurbita maxima] >XP_023547040.1 uncharacterized protein LOC111805961 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of ClCG08G016510 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 9.1e-24
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 20 MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 79

Query: 61 QSANTNKGEPVLK 74
          QSAN NKGEPVLK
Sbjct: 80 QSANANKGEPVLK 92

[Close]

BLAST of ClCG08G016510 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.7e-26
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEG+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of ClCG08G016510 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of ClCG08G016510 vs. ExPASy TrEMBL
Match: A0A0A0LN85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354700 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLD G+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDVGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLKL 75
          QSA  NKGEPVLKL
Sbjct: 61 QSATANKGEPVLKL 74

[Close]

BLAST of ClCG08G016510 vs. ExPASy TrEMBL
Match: A0A6J1HEN1 (uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC111462843 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of ClCG08G016510 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.4e-24
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSAN NKGEPVLK
Sbjct: 61 QSANANKGEPVLK 73

[Close]

BLAST of ClCG08G016510 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-20
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 4  CVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSA 63
          C SC D  +K+QRKEEER AS EARAKAAEAAQRR+E+F+KSAAGRAA+AQL   AKQSA
Sbjct: 3  CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 64 NTNKGEPVLK 74
          NTNKGEPVLK
Sbjct: 63 NTNKGEPVLK 72

The following BLAST results are available for this feature:

BLAST of ClCG08G016510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029301.1	1.2e-28	60.42	hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038886006.1	4.4e-26	100.00	uncharacterized protein LOC120076314 [Benincasa hispida]	[more]
XP_008444542.1	9.7e-26	98.63	PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo]	[more]
XP_022962383.1	4.1e-24	93.15	uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 unchar...	[more]
KAG7020610.1	9.1e-24	93.15	hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of ClCG08G016510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G016510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAJ0	4.7e-26	98.63	uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=...	[more]
A0A6J1K846	2.0e-24	93.15	uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013...	[more]
A0A0A0LN85	2.0e-24	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354700 PE=4 SV=1	[more]
A0A6J1HEN1	2.0e-24	93.15	uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1KLT2	4.4e-24	93.15	uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424...	[more]

BLAST of ClCG08G016510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63905.1	6.5e-20	78.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	PANTHER	PTHR36813	TRANSMEMBRANE PROTEIN	coord: 1..75
IPR031632	Small VCP/p97-interacting protein	PFAM	PF15811	SVIP	coord: 1..73 e-value: 1.8E-11 score: 44.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G016510.1	ClCG08G016510.1	mRNA