ClCG08G016170 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G016170
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionEarly dehydration inducible protein
LocationCG_Chr08: 28598967 .. 28599419 (-)
RNA-Seq ExpressionClCG08G016170
SyntenyClCG08G016170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCAATCCCAGGTAATAATAACTCTATTCATGCTTCCCCCAATTCGTATTCGTGTTTCAAATTTTTAAATTTTTTATGAAAAGTTTTAAGTGTATTTTTGAAAAAGTATTTTTTAACGCAGAATACAATACAAAGGTTAGTGGTATTTGGTATAATTTAGTTTTTTCTTTTGCTTATAATCCGGGACGGCTCTGTTTGTGAAGGGGTCGGAGAAGCTAAATGAAGAAGGAGCCATTGAGACGAAGGTTGACACAATCGATCAGCGTTCACCGCCGGGGCAGAACCAGCTGGAGCCCACAAACGAACGCACCACGGTGGTTCATCTAACCAGAAAACAAGCCCATGGCAGCGGAGTTACGGGGAGTGCAGCCGCGGCTGTGGGTAACGCCCTTGGTTCGGCCAGGGATGCCGTTTTTGGGAAGGGGAAAGACAGCCAACCACGGCGCTGA

mRNA sequence

ATGCACCAATCCCAGGGGTCGGAGAAGCTAAATGAAGAAGGAGCCATTGAGACGAAGGTTGACACAATCGATCAGCGTTCACCGCCGGGGCAGAACCAGCTGGAGCCCACAAACGAACGCACCACGGTGGTTCATCTAACCAGAAAACAAGCCCATGGCAGCGGAGTTACGGGGAGTGCAGCCGCGGCTGTGGGTAACGCCCTTGGTTCGGCCAGGGATGCCGTTTTTGGGAAGGGGAAAGACAGCCAACCACGGCGCTGA

Coding sequence (CDS)

ATGCACCAATCCCAGGGGTCGGAGAAGCTAAATGAAGAAGGAGCCATTGAGACGAAGGTTGACACAATCGATCAGCGTTCACCGCCGGGGCAGAACCAGCTGGAGCCCACAAACGAACGCACCACGGTGGTTCATCTAACCAGAAAACAAGCCCATGGCAGCGGAGTTACGGGGAGTGCAGCCGCGGCTGTGGGTAACGCCCTTGGTTCGGCCAGGGATGCCGTTTTTGGGAAGGGGAAAGACAGCCAACCACGGCGCTGA

Protein sequence

MHQSQGSEKLNEEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQAHGSGVTGSAAAAVGNALGSARDAVFGKGKDSQPRR
Homology
BLAST of ClCG08G016170 vs. NCBI nr
Match: KAG6585682.1 (hypothetical protein SDJN03_18415, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020595.1 hypothetical protein SDJN02_17281 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 62/84 (73.81%), Postives = 73/84 (86.90%), Query Frame = 0

Query: 1  MHQSQGSEKLNEEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQ---AHGSGVT 60
          MHQSQGSEK+NEEGAIETKV+T+D+RSPPGQ++ EP NE+TTVVHLTRKQ   + G GV 
Sbjct: 1  MHQSQGSEKINEEGAIETKVETVDERSPPGQSE-EPRNEKTTVVHLTRKQGDDSQGRGVL 60

Query: 61 GSAAAAVGNALGSARDAVFGKGKD 82
          GSAAAAV N L SA+DA+FGKGK+
Sbjct: 61 GSAAAAVANTLRSAKDAIFGKGKE 83

BLAST of ClCG08G016170 vs. NCBI nr
Match: KAA0060924.1 (hypothetical protein E6C27_scaffold501G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-13
Identity = 58/85 (68.24%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MHQSQ--GSEKLN-EEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQA--HGSG 60
          MHQSQ   SEK+N EEGAI TKV            Q+EPTNE TTVVHLTRKQ    GSG
Sbjct: 1  MHQSQEGSSEKINEEEGAIGTKV----------VKQMEPTNEGTTVVHLTRKQPADGGSG 60

Query: 61 VTGSAAAAVGNALGSARDAVFGKGK 81
          V GSAAAAVGNAL SA+DAVFGKGK
Sbjct: 61 VLGSAAAAVGNALRSAKDAVFGKGK 75

BLAST of ClCG08G016170 vs. NCBI nr
Match: KAE8652073.1 (hypothetical protein Csa_018632 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-12
Identity = 56/85 (65.88%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MHQSQ--GSEKLN-EEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQA--HGSG 60
          MHQSQ   S+K+N EEGAIETKV          + Q+EP NE TTVVHLTRKQ    GSG
Sbjct: 1  MHQSQAVSSKKINEEEGAIETKV---------VKQQMEPPNEGTTVVHLTRKQPTHGGSG 60

Query: 61 VTGSAAAAVGNALGSARDAVFGKGK 81
          V GSAA AVGNAL SA+DAVFGKGK
Sbjct: 61 VLGSAATAVGNALRSAKDAVFGKGK 76

BLAST of ClCG08G016170 vs. NCBI nr
Match: KDP41684.1 (hypothetical protein JCGZ_16091 [Jatropha curcas])

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-11
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 4  SQGSEKLNEEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQ---AHGSGVTGSA 63
          SQG+E++NEEGAIETKVDT+D RS   Q   EP  E+  VVHLTR++     G G+    
Sbjct: 3  SQGTERVNEEGAIETKVDTVDYRSSAAQE--EPNKEKVGVVHLTRQKRDSGSGDGILART 62

Query: 64 AAAVGNALGSARDAVFGKGKD 82
          AAAV N L SA+DAV G+GKD
Sbjct: 63 AAAVTNTLRSAKDAVVGRGKD 81

BLAST of ClCG08G016170 vs. NCBI nr
Match: KAB1220313.1 (hypothetical protein CJ030_MR3G019059 [Morella rubra])

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MHQSQGSEKLNEEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQAH----GSGV 60
           M++S+G+E++NE+GAIETKV+T D RSP GQ++ EP  E  TVVHLTR +      GS +
Sbjct: 93  MNKSKGTEEVNEQGAIETKVETQDHRSPAGQDK-EPKTENVTVVHLTRDEGRSSVGGSAM 152

Query: 61  TGSAAAAVGNALGSARDAVFGKGKD 82
            G+A AA  N + SA++A+FG GKD
Sbjct: 153 AGTATAA-ANTIRSAKEAIFGGGKD 175

BLAST of ClCG08G016170 vs. ExPASy TrEMBL
Match: A0A5A7V0S3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00570 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13
Identity = 58/85 (68.24%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MHQSQ--GSEKLN-EEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQA--HGSG 60
          MHQSQ   SEK+N EEGAI TKV            Q+EPTNE TTVVHLTRKQ    GSG
Sbjct: 1  MHQSQEGSSEKINEEEGAIGTKV----------VKQMEPTNEGTTVVHLTRKQPADGGSG 60

Query: 61 VTGSAAAAVGNALGSARDAVFGKGK 81
          V GSAAAAVGNAL SA+DAVFGKGK
Sbjct: 61 VLGSAAAAVGNALRSAKDAVFGKGK 75

BLAST of ClCG08G016170 vs. ExPASy TrEMBL
Match: A0A0A0LR80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356060 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.5e-12
Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 0

Query: 2  HQSQGSEKLN-EEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQA--HGSGVTG 61
          H++  S+K+N EEGAIETKV          + Q+EP NE TTVVHLTRKQ    GSGV G
Sbjct: 18 HKAVSSKKINEEEGAIETKV---------VKQQMEPPNEGTTVVHLTRKQPTHGGSGVLG 77

Query: 62 SAAAAVGNALGSARDAVFGKGK 81
          SAA AVGNAL SA+DAVFGKGK
Sbjct: 78 SAATAVGNALRSAKDAVFGKGK 90

BLAST of ClCG08G016170 vs. ExPASy TrEMBL
Match: A0A067LC75 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16091 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 4  SQGSEKLNEEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQ---AHGSGVTGSA 63
          SQG+E++NEEGAIETKVDT+D RS   Q   EP  E+  VVHLTR++     G G+    
Sbjct: 3  SQGTERVNEEGAIETKVDTVDYRSSAAQE--EPNKEKVGVVHLTRQKRDSGSGDGILART 62

Query: 64 AAAVGNALGSARDAVFGKGKD 82
          AAAV N L SA+DAV G+GKD
Sbjct: 63 AAAVTNTLRSAKDAVVGRGKD 81

BLAST of ClCG08G016170 vs. ExPASy TrEMBL
Match: A0A6A1W5Z9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019059 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.4e-11
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MHQSQGSEKLNEEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQAH----GSGV 60
           M++S+G+E++NE+GAIETKV+T D RSP GQ++ EP  E  TVVHLTR +      GS +
Sbjct: 93  MNKSKGTEEVNEQGAIETKVETQDHRSPAGQDK-EPKTENVTVVHLTRDEGRSSVGGSAM 152

Query: 61  TGSAAAAVGNALGSARDAVFGKGKD 82
            G+A AA  N + SA++A+FG GKD
Sbjct: 153 AGTATAA-ANTIRSAKEAIFGGGKD 175

BLAST of ClCG08G016170 vs. ExPASy TrEMBL
Match: A0A2P5EGM5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_195170 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 1  MHQSQGSEKLNEEGAIETKVDTIDQRSPPGQNQLEPTNERTTVVHLTRKQA----HGSGV 60
          M+ S+G E++NE  A+E+KV+T+D R+PPG+   EP  E   VVHLTRK A     G GV
Sbjct: 1  MNNSRGKEEINEGAAVESKVNTVDYRTPPGEEGKEPKEEGVQVVHLTRKGAGSASSGGGV 60

Query: 61 TGSAAAAVGNALGSARDAVFGKGKD 82
             AAAAV N L SA+DA+   G+D
Sbjct: 61 LAKAAAAVANTLQSAKDAISRTGRD 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6585682.12.2e-2273.81hypothetical protein SDJN03_18415, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0060924.17.1e-1368.24hypothetical protein E6C27_scaffold501G00570 [Cucumis melo var. makuwa][more]
KAE8652073.13.5e-1265.88hypothetical protein Csa_018632 [Cucumis sativus][more]
KDP41684.16.7e-1156.79hypothetical protein JCGZ_16091 [Jatropha curcas][more]
KAB1220313.11.9e-1052.94hypothetical protein CJ030_MR3G019059 [Morella rubra][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V0S33.4e-1368.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LR808.5e-1263.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356060 PE=4 SV=1[more]
A0A067LC753.2e-1156.79Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16091 PE=4 SV=1[more]
A0A6A1W5Z99.4e-1152.94Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019059 PE=4 SV=1[more]
A0A2P5EGM51.2e-1050.59Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_195170 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G016170.1ClCG08G016170.1mRNA