ClCG08G015950 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G015950
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	CG_Chr08: 28351845 .. 28353649 (-)
RNA-Seq Expression	ClCG08G015950
Synteny	ClCG08G015950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGAAGCAAAGAAAGAGGATAACATAACAACTACAACGATAACAGCACCCACTGCAGAAGGAGACCACAGATCCATGGCGGTTTCAGTTTCAGCGGCCATTGCCAGAGCCACGGCCTTCCATCTGCAGCCTTCTTCTTCATCTTCATCTTCATCTTACACCCCTTTATTCAACCCTAACCAGTCCCTCCGCCTCCCATCACCCTCCCGCCGCAAACTATTAATAGCTCAAGCTCAATCGGAACACCGCCAAACATGGCTCCCCGGCCTCGACCCGCCACCGTATCTCGACGGAACCCTTGCCGGCGATTTTGGCTTCGACCCACTTGGGCTCGGCGAGGACCCACACAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATGTCTGTAACCAATTAATCTTACCTTTCAATAATTTCACAAAATTAGAAACCCTAAATTAAAGGTTGATCTTCTTTGTTTGTGGCAGTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTTGAATATGGTTTTGCCAGCAAAGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTCCTAATACTTCCTTATCCTTAATTTCCCTTTTTTAACTGTGCCTGTATTCATCACTTTATTTGCTTTTACTTGGCTGTGAAGGTTTGTGGAAACCAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAACAAGGAACTTTCTTTGGTTTAGAAGCTGCTTTTGAAGGTCTTGAGCCCGGGTAATTTACATTTCCCTAGAAATTCTTACAATGTTAGATAATACAAATCTTAACCTCAAACACAGTGCCCAAACTCATTAAAACAGTTTTTCTCCGTCCTTCTACCCAAGATCGACCACCATAATTCTCGGCGCTTTTTTTTTTTAATCACTCAGAAAATCTTATATCAATGAAGACAGACAATCATCCTCACTTATATACTAATCATTTCCTTCCCTATGTAATGTAGGACTTTGTCTGCACTCTAACGAATGGAATGTAGAAGCATGTCGTACTATTTTCAATCCCAAATTTTTTCTAACATTCTTCCAAAACTCTACTTCAATGGTAGTTTTAAAACGGTTATAAAAGGTCAAAGGTGATCGGAATGAGAACAATTTTTAAATAAAGGTTCTGAAGTTTATAGGATGCCCTTTTGATCATGGAACCAACTAGAAGAGGGAAATCTAAACCTTATATTAAAATTTGGAAAGGGAATAGTTGTTATTTCCTCTTGAACTTATCTCATGGATTAAACAGTTTCGAGGGATGATTAACTTACAGATATCCTGGGGGTCCTCTGCTGAATCCTCTCGGCATTGCTAAAGATATCAAAAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGTTAAATTTTCCACTCATATTGTCAAATTTTCGTCTTAGTTTTCTTAGACTGATCATTGTTCCTTAAAATTCCAGGACGCCTTGCGATGGTAGCCATGCTCGGAATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTAGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTTTCAAGCTCAAGTCCTTAGTGGAAACTTTAGAGTCTCTTTACTCAATGAGCAAAAAATAACATGACATTGGAGATTTATCAGCTAAAAAGAGTACAGATGAAACAACATATGACCTTGTCATTTGATTTGATTAATACAACAGACTTTTCCCCGAG

mRNA sequence

ATAAGAAGCAAAGAAAGAGGATAACATAACAACTACAACGATAACAGCACCCACTGCAGAAGGAGACCACAGATCCATGGCGGTTTCAGTTTCAGCGGCCATTGCCAGAGCCACGGCCTTCCATCTGCAGCCTTCTTCTTCATCTTCATCTTCATCTTACACCCCTTTATTCAACCCTAACCAGTCCCTCCGCCTCCCATCACCCTCCCGCCGCAAACTATTAATAGCTCAAGCTCAATCGGAACACCGCCAAACATGGCTCCCCGGCCTCGACCCGCCACCGTATCTCGACGGAACCCTTGCCGGCGATTTTGGCTTCGACCCACTTGGGCTCGGCGAGGACCCACACAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTTGAATATGGTTTTGCCAGCAAAGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACCAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAACAAGGAACTTTCTTTGGTTTAGAAGCTGCTTTTGAAGGTCTTGAGCCCGGATATCCTGGGGGTCCTCTGCTGAATCCTCTCGGCATTGCTAAAGATATCAAAAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGACGCCTTGCGATGGTAGCCATGCTCGGAATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTAGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTTTCAAGCTCAAGTCCTTAGTGGAAACTTTAGAGTCTCTTTACTCAATGAGCAAAAAATAACATGACATTGGAGATTTATCAGCTAAAAAGAGTACAGATGAAACAACATATGACCTTGTCATTTGATTTGATTAATACAACAGACTTTTCCCCGAG

Coding sequence (CDS)

ATGGCGGTTTCAGTTTCAGCGGCCATTGCCAGAGCCACGGCCTTCCATCTGCAGCCTTCTTCTTCATCTTCATCTTCATCTTACACCCCTTTATTCAACCCTAACCAGTCCCTCCGCCTCCCATCACCCTCCCGCCGCAAACTATTAATAGCTCAAGCTCAATCGGAACACCGCCAAACATGGCTCCCCGGCCTCGACCCGCCACCGTATCTCGACGGAACCCTTGCCGGCGATTTTGGCTTCGACCCACTTGGGCTCGGCGAGGACCCACACAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTTGAATATGGTTTTGCCAGCAAAGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACCAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAACAAGGAACTTTCTTTGGTTTAGAAGCTGCTTTTGAAGGTCTTGAGCCCGGATATCCTGGGGGTCCTCTGCTGAATCCTCTCGGCATTGCTAAAGATATCAAAAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGACGCCTTGCGATGGTAGCCATGCTCGGAATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTAGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTTTCAAGCTCAAGTCCTTAG

Protein sequence

MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLIAQAQSEHRQTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP

Homology

[Close]

BLAST of ClCG08G015950 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 510.0 bits (1312), Expect = 1.2e-140
Identity = 254/264 (96.21%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLIAQAQSEHRQT 60
           MAVSVSAA ARATAFHLQP  SSSSSSYTP FNPNQSLRL SPSRR LLIAQAQSEHRQT
Sbjct: 1   MAVSVSAATARATAFHLQP--SSSSSSYTPSFNPNQSLRLRSPSRRTLLIAQAQSEHRQT 60

Query: 61  WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL 120
           WLPGLDPPP+LDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL
Sbjct: 61  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL 120

Query: 121 RVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFG 180
           RVTGISELPVWYNAGAVEYGFA+KETLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFFG
Sbjct: 121 RVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 180

Query: 181 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240
           LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTHT
Sbjct: 181 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240

Query: 241 GPIDNLVEHLSNPWHKTIIQTLSS 265
           GPIDNLVEHLSNPWHKTIIQTLSS
Sbjct: 241 GPIDNLVEHLSNPWHKTIIQTLSS 262

[Close]

BLAST of ClCG08G015950 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 485.0 bits (1247), Expect = 4.3e-133
Identity = 243/267 (91.01%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLIAQAQSEHRQT 60
           MAVS SA    ATA HL P    SSSSYTPLFNP+Q LRL SPSRR LLIA AQSEHRQT
Sbjct: 1   MAVSFSA----ATALHLHP----SSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQT 60

Query: 61  WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL 120
           WLPGLDPPP+LDGTLAGDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGVSG+LLTDLL
Sbjct: 61  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 120

Query: 121 RVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFG 180
           RVTGISELPVWYNAGAVEYGFA+K TLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFFG
Sbjct: 121 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 180

Query: 181 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240
           LEAAF+GLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT
Sbjct: 181 LEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240

Query: 241 GPIDNLVEHLSNPWHKTIIQTLSSSSP 268
           GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 GPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of ClCG08G015950 vs. NCBI nr
Match: XP_008444623.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis melo] >KAA0060903.1 photosystem I chlorophyll a/b-binding protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 478.8 bits (1231), Expect = 3.1e-131
Identity = 240/268 (89.55%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNP-NQSLRLPSPSRRKLLIAQAQSEHRQ 60
           MAVS+SA    AT FHL P    SSSS+TPLFNP NQ +RL SPSR  LLIA AQSEHRQ
Sbjct: 1   MAVSISA----ATPFHLHP----SSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQ 60

Query: 61  TWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDL 120
           TWLPGLDPPPYLDGTL GDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGV+G+LLTDL
Sbjct: 61  TWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDL 120

Query: 121 LRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFF 180
           LRVTGISELPVWYNAGAVEYGFA+K TLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFF
Sbjct: 121 LRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFF 180

Query: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240
           GLEAAFEGLEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH
Sbjct: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240

Query: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 268
           TGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of ClCG08G015950 vs. NCBI nr
Match: XP_023001834.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 446.4 bits (1147), Expect = 1.7e-121
Identity = 228/268 (85.07%), Postives = 242/268 (90.30%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLI-AQAQSEHRQ 60
           MAVS+SA    AT FHL PSSS  SSS +     ++   L SPSRR +   AQ+QS+ RQ
Sbjct: 1   MAVSLSA----ATPFHLLPSSSLYSSSLS-----SKQHLLRSPSRRTVTAQAQSQSQPRQ 60

Query: 61  TWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDL 120
           TWLPGLDPPP+LDGTLAGDFGFDPLGLGEDPHSLKW+VQAELVHSRFAMLGVSGILLTDL
Sbjct: 61  TWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDL 120

Query: 121 LRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFF 180
           LRVTGISELPVWYNAGAVEYGFA+KETLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFF
Sbjct: 121 LRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFF 180

Query: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240
           GLE+AFEGLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT 
Sbjct: 181 GLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQ 240

Query: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 268
           TGPIDNLVEHLSNPWH TII TLSSSSP
Sbjct: 241 TGPIDNLVEHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of ClCG08G015950 vs. NCBI nr
Match: XP_022951251.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata] >KAG6585667.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020573.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.0 bits (1146), Expect = 2.2e-121
Identity = 228/265 (86.04%), Postives = 241/265 (90.94%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLI-AQAQSEHRQ 60
           MAVS+SA    AT+FHL PSSS  SSS     +P Q L L SPSRR +   AQ+QS+ RQ
Sbjct: 1   MAVSLSA----ATSFHLLPSSSFYSSS----LSPKQHL-LRSPSRRTVTAQAQSQSQPRQ 60

Query: 61  TWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDL 120
           TWLPGLDPPP+LDGTLAGDFGFDPLGLGEDPHSLKW+VQAELVHSRFAMLGVSGILLTDL
Sbjct: 61  TWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDL 120

Query: 121 LRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFF 180
           LRVTGISELPVWYNAGAVEYGFA+KETLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFF
Sbjct: 121 LRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFF 180

Query: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240
           GLE+AFEGLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 
Sbjct: 181 GLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQ 240

Query: 241 TGPIDNLVEHLSNPWHKTIIQTLSS 265
           TGPIDNLVEHLSNPWH T+I TLSS
Sbjct: 241 TGPIDNLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of ClCG08G015950 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.8e-102
Identity = 175/210 (83.33%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 58  RQTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLT 117
           R TWLPGL+PPPYLDG LAGD+GFDPLGLGEDP SLKWYVQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 118 DLLRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGT 177
           DLLR TGI  LPVWY AGAV++ FAS +TL +VQ LLMGF ETKRYMDF SPGSQA++G+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 178 -FFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 237
            FFGLEAA EGLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 238 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 267
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of ClCG08G015950 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-53
Identity = 106/203 (52.22%), Postives = 138/203 (67.98%), Query Frame = 0


Query: 61  WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL 120
           WLPGL  P YL G+LAGD GFDPLGL EDP +LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 121 RVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFG 180
              GI  +P WY+AG  +Y FAS  TLF+++ +L  +VE +R+ D K+PGS  Q   F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 181 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240
            + +    E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 241 GPIDNLVEHLSNPWHKTIIQTLS 264
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of ClCG08G015950 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-53
Identity = 108/207 (52.17%), Postives = 139/207 (67.15%), Query Frame = 0


Query: 61  WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL 120
           WLPGL  P YL G+L GD GFDPLGL EDP +L+W+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 121 RVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTF-- 180
              GI  +P WY AG  EY FAS  TLF+++ +L  +VE +R+ D K+PGS  Q   F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 175

Query: 181 FGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240
           + L A     E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT
Sbjct: 176 YSLPAG----EVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVT 235

Query: 241 HTGPIDNLVEHLSNPWHKTIIQTLSSS 266
             GP DNL++H+S+PWH TI+QTL  +
Sbjct: 236 GKGPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]

BLAST of ClCG08G015950 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.1e-50
Identity = 113/247 (45.75%), Postives = 145/247 (58.70%), Query Frame = 0


Query: 20  SSSSSSSSYTPLFNPNQSLRL------PSPSRRKLLI-AQAQSEHRQTWLPGLDPPPYLD 79
           +SS+ ++  +P F   + LRL      P+ SR    + A A    R  W PG  PP +LD
Sbjct: 7   ASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLD 66

Query: 80  GTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWY 139
           G+L GDFGFDPLGL  DP SLKW VQAE+VH R+AMLG +GI + + L   GI   P WY
Sbjct: 67  GSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 126

Query: 140 NAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFGLEAAFEGLEPGY 199
            AG  EY F  K TLF+V+L+L+G+ E +R+ D   PGS      F        G + GY
Sbjct: 127 TAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--PNNKLTGTDVGY 186

Query: 200 PGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLS 259
           PGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL+
Sbjct: 187 PGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 246

[Close]

BLAST of ClCG08G015950 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.8e-49
Identity = 117/272 (43.01%), Postives = 151/272 (55.51%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSS---SYTPLFNPNQSLRL-----PSPSRRKLLIAQ 60
           MA + +++   A AF   PSS  + S   +    F   + LR+     P  SR   + A 
Sbjct: 1   MASACASSTIAAVAFS-SPSSQKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAV 60

Query: 61  AQSEHRQTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVS 120
           A    R  W PG  PP +LDG+L GDFGFDPLGLG DP SLKW  QAELVHSR+AMLG +
Sbjct: 61  AADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAA 120

Query: 121 GILLTDLLRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQ 180
           GI + + L   G+   P WY AG  EY F    TLF+++L+L+G+ E +R+ D   PG  
Sbjct: 121 GIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRWADIIKPGCV 180

Query: 181 AQQGTFFGLEAAFEGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAMLGI 240
                F        G + GYPGG   +PLG          + + KEIKNGRLAM+A++G 
Sbjct: 181 NTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGA 240

Query: 241 FVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 264
           + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 241 WFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of ClCG08G015950 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.1e-133
Identity = 243/267 (91.01%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLIAQAQSEHRQT 60
           MAVS SA    ATA HL P    SSSSYTPLFNP+Q LRL SPSRR LLIA AQSEHRQT
Sbjct: 1   MAVSFSA----ATALHLHP----SSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQT 60

Query: 61  WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL 120
           WLPGLDPPP+LDGTLAGDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGVSG+LLTDLL
Sbjct: 61  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 120

Query: 121 RVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFG 180
           RVTGISELPVWYNAGAVEYGFA+K TLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFFG
Sbjct: 121 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 180

Query: 181 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240
           LEAAF+GLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT
Sbjct: 181 LEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240

Query: 241 GPIDNLVEHLSNPWHKTIIQTLSSSSP 268
           GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 GPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of ClCG08G015950 vs. ExPASy TrEMBL
Match: A0A5A7UY53 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00360 PE=3 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.5e-131
Identity = 240/268 (89.55%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNP-NQSLRLPSPSRRKLLIAQAQSEHRQ 60
           MAVS+SA    AT FHL P    SSSS+TPLFNP NQ +RL SPSR  LLIA AQSEHRQ
Sbjct: 1   MAVSISA----ATPFHLHP----SSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQ 60

Query: 61  TWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDL 120
           TWLPGLDPPPYLDGTL GDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGV+G+LLTDL
Sbjct: 61  TWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDL 120

Query: 121 LRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFF 180
           LRVTGISELPVWYNAGAVEYGFA+K TLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFF
Sbjct: 121 LRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFF 180

Query: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240
           GLEAAFEGLEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH
Sbjct: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240

Query: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 268
           TGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of ClCG08G015950 vs. ExPASy TrEMBL
Match: A0A1S3BBL1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487892 PE=3 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.5e-131
Identity = 240/268 (89.55%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNP-NQSLRLPSPSRRKLLIAQAQSEHRQ 60
           MAVS+SA    AT FHL P    SSSS+TPLFNP NQ +RL SPSR  LLIA AQSEHRQ
Sbjct: 1   MAVSISA----ATPFHLHP----SSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQ 60

Query: 61  TWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDL 120
           TWLPGLDPPPYLDGTL GDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGV+G+LLTDL
Sbjct: 61  TWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDL 120

Query: 121 LRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFF 180
           LRVTGISELPVWYNAGAVEYGFA+K TLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFF
Sbjct: 121 LRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFF 180

Query: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240
           GLEAAFEGLEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH
Sbjct: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240

Query: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 268
           TGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of ClCG08G015950 vs. ExPASy TrEMBL
Match: A0A6J1KNS0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495909 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 8.2e-122
Identity = 228/268 (85.07%), Postives = 242/268 (90.30%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLI-AQAQSEHRQ 60
           MAVS+SA    AT FHL PSSS  SSS +     ++   L SPSRR +   AQ+QS+ RQ
Sbjct: 1   MAVSLSA----ATPFHLLPSSSLYSSSLS-----SKQHLLRSPSRRTVTAQAQSQSQPRQ 60

Query: 61  TWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDL 120
           TWLPGLDPPP+LDGTLAGDFGFDPLGLGEDPHSLKW+VQAELVHSRFAMLGVSGILLTDL
Sbjct: 61  TWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDL 120

Query: 121 LRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFF 180
           LRVTGISELPVWYNAGAVEYGFA+KETLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFF
Sbjct: 121 LRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFF 180

Query: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240
           GLE+AFEGLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT 
Sbjct: 181 GLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQ 240

Query: 241 TGPIDNLVEHLSNPWHKTIIQTLSSSSP 268
           TGPIDNLVEHLSNPWH TII TLSSSSP
Sbjct: 241 TGPIDNLVEHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of ClCG08G015950 vs. ExPASy TrEMBL
Match: A0A6J1GH16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454144 PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.1e-121
Identity = 228/265 (86.04%), Postives = 241/265 (90.94%), Query Frame = 0


Query: 1   MAVSVSAAIARATAFHLQPSSSSSSSSYTPLFNPNQSLRLPSPSRRKLLI-AQAQSEHRQ 60
           MAVS+SA    AT+FHL PSSS  SSS     +P Q L L SPSRR +   AQ+QS+ RQ
Sbjct: 1   MAVSLSA----ATSFHLLPSSSFYSSS----LSPKQHL-LRSPSRRTVTAQAQSQSQPRQ 60

Query: 61  TWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDL 120
           TWLPGLDPPP+LDGTLAGDFGFDPLGLGEDPHSLKW+VQAELVHSRFAMLGVSGILLTDL
Sbjct: 61  TWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDL 120

Query: 121 LRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFF 180
           LRVTGISELPVWYNAGAVEYGFA+KETLFIVQLLLMGFVETKRYMDFKSPGSQAQ+GTFF
Sbjct: 121 LRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFF 180

Query: 181 GLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH 240
           GLE+AFEGLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 
Sbjct: 181 GLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQ 240

Query: 241 TGPIDNLVEHLSNPWHKTIIQTLSS 265
           TGPIDNLVEHLSNPWH T+I TLSS
Sbjct: 241 TGPIDNLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of ClCG08G015950 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-103
Identity = 175/210 (83.33%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 58  RQTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLT 117
           R TWLPGL+PPPYLDG LAGD+GFDPLGLGEDP SLKWYVQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 118 DLLRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGT 177
           DLLR TGI  LPVWY AGAV++ FAS +TL +VQ LLMGF ETKRYMDF SPGSQA++G+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 178 -FFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 237
            FFGLEAA EGLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 238 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 267
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of ClCG08G015950 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-103
Identity = 175/210 (83.33%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 58  RQTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLT 117
           R TWLPGL+PPPYLDG LAGD+GFDPLGLGEDP SLKWYVQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 118 DLLRVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGT 177
           DLLR TGI  LPVWY AGAV++ FAS +TL +VQ LLMGF ETKRYMDF SPGSQA++G+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 178 -FFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 237
            FFGLEAA EGLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 238 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 267
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of ClCG08G015950 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-54
Identity = 106/203 (52.22%), Postives = 138/203 (67.98%), Query Frame = 0


Query: 61  WLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLL 120
           WLPGL  P YL G+LAGD GFDPLGL EDP +LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 121 RVTGISELPVWYNAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFG 180
              GI  +P WY+AG  +Y FAS  TLF+++ +L  +VE +R+ D K+PGS  Q   F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 181 LEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 240
            + +    E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 241 GPIDNLVEHLSNPWHKTIIQTLS 264
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of ClCG08G015950 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 198.7 bits (504), Expect = 5.7e-51
Identity = 113/247 (45.75%), Postives = 145/247 (58.70%), Query Frame = 0


Query: 20  SSSSSSSSYTPLFNPNQSLRL------PSPSRRKLLI-AQAQSEHRQTWLPGLDPPPYLD 79
           +SS+ ++  +P F   + LRL      P+ SR    + A A    R  W PG  PP +LD
Sbjct: 7   ASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLD 66

Query: 80  GTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWY 139
           G+L GDFGFDPLGL  DP SLKW VQAE+VH R+AMLG +GI + + L   GI   P WY
Sbjct: 67  GSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 126

Query: 140 NAGAVEYGFASKETLFIVQLLLMGFVETKRYMDFKSPGSQAQQGTFFGLEAAFEGLEPGY 199
            AG  EY F  K TLF+V+L+L+G+ E +R+ D   PGS      F        G + GY
Sbjct: 127 TAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--PNNKLTGTDVGY 186

Query: 200 PGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLS 259
           PGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL+
Sbjct: 187 PGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLA 246

[Close]

BLAST of ClCG08G015950 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 178.3 bits (451), Expect = 8.0e-45
Identity = 93/225 (41.33%), Postives = 131/225 (58.22%), Query Frame = 0


Query: 54  QSEHRQTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPHSL------KWYVQAELVHSRFA 113
           Q  +R  W        YLDG+L GD+GFDPLGL  DP         +W    E+++ RFA
Sbjct: 49  QGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFA 108

Query: 114 MLGVSGILLTDLLRVTGI----SELPVWYNAGAVEYG-----FASKETLFIVQLLLMGFV 173
           MLG +G +  ++L   G+    + LP W+  G +        +A   TLF++++ LMGF 
Sbjct: 109 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 168

Query: 174 ETKRYMDFKSPGSQAQQGTFFGLEAAFEGL-EPGYPGGPLLNPLGIAKDIKNAHDWKLKE 233
           E +R  D+ +PGS  +Q  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE
Sbjct: 169 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 228

Query: 234 IKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 263
           +KNGRLAM+A+LG F+Q  VT  GP  NL++HL++P +  ++ +L
Sbjct: 229 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

The following BLAST results are available for this feature:

BLAST of ClCG08G015950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886221.1	1.2e-140	96.21	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]
XP_004150882.1	4.3e-133	91.01	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]
XP_008444623.1	3.1e-131	89.55	PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucum...	[more]
XP_023001834.1	1.7e-121	85.07	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima...	[more]
XP_022951251.1	2.2e-121	86.04	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moscha...	[more]

BLAST of ClCG08G015950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	1.8e-102	83.33	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P27521	1.6e-53	52.22	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SQL2	1.6e-53	52.17	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
Q9SYW8	8.1e-50	45.75	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P13869	6.8e-49	43.01	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of ClCG08G015950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB4	2.1e-133	91.01	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7UY53	1.5e-131	89.55	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BBL1	1.5e-131	89.55	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KNS0	8.2e-122	85.07	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GH16	1.1e-121	86.04	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of ClCG08G015950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	1.3e-103	83.33	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	1.3e-103	83.33	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	1.1e-54	52.22	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	5.7e-51	45.75	photosystem I light harvesting complex gene 2	[more]
AT1G61520.1	8.0e-45	41.33	photosystem I light harvesting complex gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..236 e-value: 1.1E-47 score: 162.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 58..266 e-value: 7.3E-61 score: 207.5
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 27..264
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 27..264
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 56..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G015950.1	ClCG08G015950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding