ClCG08G013050 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G013050
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionEG45-like domain containing protein
LocationCG_Chr08: 25946276 .. 25947006 (-)
RNA-Seq ExpressionClCG08G013050
SyntenyClCG08G013050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAATCCTCTGTTTCTCTGTCGATTCCTCTTCTCCATCTTCTTCGTCGCTCACCTCTTCAATCTCTCTCATGGAGATGTCGGCACTGCTACACCTTACGGTCCTCCTTATTTACGTAAGTTAATCCACAACATTTCCATTATTCATTTTCTTCAATTTTCAATTAATGAAATTTTACACAGCCACCGCTTGTGCCGGAAACGATTTCTCGATGTTTCCGACGACAAACCTGTTCGCGGCGGCCGGAGAGGGAATATGGGAAAATGGAGCGGCTTGTGGAAGACAATACCTAGTGAGATGCTTCAGCTCCAACGTACGGAAGGCGTGCGTTACCGATCAGACGATTCAGGTCACAATCGTGGATCGTGCGATTTCGACGGTGTCGAAGCCGGCGGTAGCGGGTACGACGATGTTGTTGTCGACGACGGCGTATAAATCCATCGTTAAAGGAGCTGCGTCGCTCGTGAGCATCGAATTCACACAGTGAGTGGTTTGGAGAATTTGTTATTTTTTCAAAATTTTAGGGATTTTTCAATTCGAGTGAGTTTTGAATTGATCGGAGTGGAATTTTGTGTCGATTTTTGCAGAGTTTGAATTGAAAATTCATGGAGGAAGGTCGAACAATGATTTAGGGTTTTTTTTTCCCCTGTTTTTTTTTTTTTTCTGACTGGTCCAAATTCTAGAACTGTGAGGAAGATGAAGTCCATGTGTTCGGTTTCCGCCATTGA

mRNA sequence

ATGTCGAATCCTCTGTTTCTCTGTCGATTCCTCTTCTCCATCTTCTTCGTCGCTCACCTCTTCAATCTCTCTCATGGAGATGTCGGCACTGCTACACCTTACGGTCCTCCTTATTTACGTAAGTTAATCCACAACATTTCCATTATTCATTTTCTTCAATTTTCAATTAATGAAATTTTACACAGCCACCGCTTGTGCCGGAAACGATTTCTCGATGTTTCCGACGACAAACCTGTTCGCGGCGGCCGGAGAGGGAATATGGGAAAATGGAGCGGCTTGTGGAAGACAATACCTAGTGAGATGCTTCAGCTCCAACGTACGGAAGGCGTGCGTTACCGATCAGACGATTCAGGTCACAATCGTGGATCGTGCGATTTCGACGGTGTCGAAGCCGGCGGTAGCGGGGATTTTTCAATTCGAAACTGTGAGGAAGATGAAGTCCATGTGTTCGGTTTCCGCCATTGA

Coding sequence (CDS)

ATGTCGAATCCTCTGTTTCTCTGTCGATTCCTCTTCTCCATCTTCTTCGTCGCTCACCTCTTCAATCTCTCTCATGGAGATGTCGGCACTGCTACACCTTACGGTCCTCCTTATTTACGTAAGTTAATCCACAACATTTCCATTATTCATTTTCTTCAATTTTCAATTAATGAAATTTTACACAGCCACCGCTTGTGCCGGAAACGATTTCTCGATGTTTCCGACGACAAACCTGTTCGCGGCGGCCGGAGAGGGAATATGGGAAAATGGAGCGGCTTGTGGAAGACAATACCTAGTGAGATGCTTCAGCTCCAACGTACGGAAGGCGTGCGTTACCGATCAGACGATTCAGGTCACAATCGTGGATCGTGCGATTTCGACGGTGTCGAAGCCGGCGGTAGCGGGGATTTTTCAATTCGAAACTGTGAGGAAGATGAAGTCCATGTGTTCGGTTTCCGCCATTGA

Protein sequence

MSNPLFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYLRKLIHNISIIHFLQFSINEILHSHRLCRKRFLDVSDDKPVRGGRRGNMGKWSGLWKTIPSEMLQLQRTEGVRYRSDDSGHNRGSCDFDGVEAGGSGDFSIRNCEEDEVHVFGFRH
Homology
[Close]
BLAST of ClCG08G013050 vs. NCBI nr
Match: XP_038886390.1 (EG45-like domain containing protein [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MSNPLFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYL 40
          MSNPL    FLFSIFFVAHLF+LSHGDVGTATPYGPPYL
Sbjct: 1  MSNPL----FLFSIFFVAHLFHLSHGDVGTATPYGPPYL 35

[Close]
BLAST of ClCG08G013050 vs. NCBI nr
Match: XP_011649798.1 (EG45-like domain containing protein [Cucumis sativus] >KGN62912.1 hypothetical protein Csa_022183 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-08
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MSNPLFLC-RFLFSIFFVAHLFNLSHGDVGTATPYGPPY 39
          MSNPLFL  R LFSIFF+AHLF+LSHGDVGTAT YGPPY
Sbjct: 1  MSNPLFLSRRCLFSIFFIAHLFHLSHGDVGTATTYGPPY 39

[Close]
BLAST of ClCG08G013050 vs. NCBI nr
Match: KAA0064959.1 (EG45-like domain containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-07
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MSN--PLFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYL 40
          MSN  P FL R LFSIFF+AHLF+LSHGDVG+AT YGPPYL
Sbjct: 1  MSNIPPPFLSRCLFSIFFIAHLFHLSHGDVGSATHYGPPYL 41

[Close]
BLAST of ClCG08G013050 vs. NCBI nr
Match: XP_008445151.1 (PREDICTED: EG45-like domain containing protein [Cucumis melo] >XP_008445152.1 PREDICTED: EG45-like domain containing protein [Cucumis melo] >XP_016899971.1 PREDICTED: EG45-like domain containing protein [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-07
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MSN--PLFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYL 40
          MSN  P FL R LFSIFF+AHLF+LSHGDVG+AT YGPPYL
Sbjct: 1  MSNIPPPFLSRCLFSIFFIAHLFHLSHGDVGSATHYGPPYL 41

[Close]
BLAST of ClCG08G013050 vs. NCBI nr
Match: RWW30361.1 (hypothetical protein GW17_00005062 [Ensete ventricosum])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 54/159 (33.96%), Postives = 71/159 (44.65%), Query Frame = 0 

Query: 1   MSNP---LFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYLRKLIHN-ISIIHFLQFSI 60
           MS P   L LC   FS+F       L   DVGTA  YGPPY R+   +    ++ L  + 
Sbjct: 1   MSTPWKLLPLCALFFSLF-----LRLCVADVGTAAYYGPPYTRECPRSWPQRVNLLYLTP 60

Query: 61  NEILHSHRLCRKRFLDVSDDKPVRGGRRGNMGKWSGLWKTIPSEMLQLQRTEGVRYRSDD 120
                SH L  +R   VS  +P+RGG RG MG+   L + +   M QL  +EG+R R   
Sbjct: 61  PSAPPSHGLLWRRHEPVSCKQPLRGGGRGGMGQRRSLREGVRGPMSQLAHSEGLRQRQHS 120

Query: 121 SGHNRGS---CDFDGV----EAGGSGDFSIRNCEEDEVH 149
            G  R S    + D V    + G        +CE D  H
Sbjct: 121 PGRGRRSGQHAELDAVHQRHDVGPVKSSVSEDCELDSFH 154

[Close]
BLAST of ClCG08G013050 vs. ExPASy TrEMBL
Match: A0A0A0LQ33 (Expansin-like EG45 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G379920 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0 

Query: 1  MSNPLFLC-RFLFSIFFVAHLFNLSHGDVGTATPYGPPY 39
          MSNPLFL  R LFSIFF+AHLF+LSHGDVGTAT YGPPY
Sbjct: 1  MSNPLFLSRRCLFSIFFIAHLFHLSHGDVGTATTYGPPY 39

[Close]
BLAST of ClCG08G013050 vs. ExPASy TrEMBL
Match: A0A1S3BC04 (EG45-like domain containing protein OS=Cucumis melo OX=3656 GN=LOC103488275 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MSN--PLFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYL 40
          MSN  P FL R LFSIFF+AHLF+LSHGDVG+AT YGPPYL
Sbjct: 1  MSNIPPPFLSRCLFSIFFIAHLFHLSHGDVGSATHYGPPYL 41

[Close]
BLAST of ClCG08G013050 vs. ExPASy TrEMBL
Match: A0A5A7VHL3 (EG45-like domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002800 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MSN--PLFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYL 40
          MSN  P FL R LFSIFF+AHLF+LSHGDVG+AT YGPPYL
Sbjct: 1  MSNIPPPFLSRCLFSIFFIAHLFHLSHGDVGSATHYGPPYL 41

[Close]
BLAST of ClCG08G013050 vs. ExPASy TrEMBL
Match: A0A444G6B1 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00005062 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-07
Identity = 54/159 (33.96%), Postives = 71/159 (44.65%), Query Frame = 0 

Query: 1   MSNP---LFLCRFLFSIFFVAHLFNLSHGDVGTATPYGPPYLRKLIHN-ISIIHFLQFSI 60
           MS P   L LC   FS+F       L   DVGTA  YGPPY R+   +    ++ L  + 
Sbjct: 1   MSTPWKLLPLCALFFSLF-----LRLCVADVGTAAYYGPPYTRECPRSWPQRVNLLYLTP 60

Query: 61  NEILHSHRLCRKRFLDVSDDKPVRGGRRGNMGKWSGLWKTIPSEMLQLQRTEGVRYRSDD 120
                SH L  +R   VS  +P+RGG RG MG+   L + +   M QL  +EG+R R   
Sbjct: 61  PSAPPSHGLLWRRHEPVSCKQPLRGGGRGGMGQRRSLREGVRGPMSQLAHSEGLRQRQHS 120

Query: 121 SGHNRGS---CDFDGV----EAGGSGDFSIRNCEEDEVH 149
            G  R S    + D V    + G        +CE D  H
Sbjct: 121 PGRGRRSGQHAELDAVHQRHDVGPVKSSVSEDCELDSFH 154

[Close]
BLAST of ClCG08G013050 vs. ExPASy TrEMBL
Match: A0A427AI70 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00005083 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 53/159 (33.33%), Postives = 70/159 (44.03%), Query Frame = 0 

Query: 1   MSNPLFL---CRFLFSIFFVAHLFNLSHGDVGTATPYGPPYLRKLIHN-ISIIHFLQFSI 60
           MS P  L   C   FS+F       L   DVGTA  YGPPY R+   +    ++ L  + 
Sbjct: 31  MSTPWKLLPRCALFFSLF-----LRLCVADVGTAAYYGPPYTRECPRSWPQRVNLLYLTP 90

Query: 61  NEILHSHRLCRKRFLDVSDDKPVRGGRRGNMGKWSGLWKTIPSEMLQLQRTEGVRYRSDD 120
                SH L  +R   VS  +P+RGG RG MG+   L + +   M QL  +EG+R R   
Sbjct: 91  PSAPPSHGLLWRRHEPVSCKQPLRGGGRGGMGQRRSLREGVRGPMSQLAHSEGLRQRQHS 150

Query: 121 SGHNRGS---CDFDGV----EAGGSGDFSIRNCEEDEVH 149
            G  R S    + D V    + G        +CE D  H
Sbjct: 151 PGRGRRSGQHAELDAVHQRHDVGPVKSSVSEDCELDSFH 184

The following BLAST results are available for this feature:
BLAST of ClCG08G013050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886390.11.5e-0887.18EG45-like domain containing protein [Benincasa hispida][more]
XP_011649798.15.5e-0884.62EG45-like domain containing protein [Cucumis sativus] >KGN62912.1 hypothetical p... [more]
KAA0064959.16.1e-0778.05EG45-like domain containing protein [Cucumis melo var. makuwa][more]
XP_008445151.16.1e-0778.05PREDICTED: EG45-like domain containing protein [Cucumis melo] >XP_008445152.1 PR... [more]
RWW30361.11.0e-0633.96hypothetical protein GW17_00005062 [Ensete ventricosum][more]
BLAST of ClCG08G013050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G013050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ332.7e-0884.62Expansin-like EG45 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2... [more]
A0A1S3BC043.0e-0778.05EG45-like domain containing protein OS=Cucumis melo OX=3656 GN=LOC103488275 PE=4... [more]
A0A5A7VHL33.0e-0778.05EG45-like domain containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A444G6B15.1e-0733.96Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00005062 PE=4 SV=1[more]
A0A427AI701.9e-0633.33Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00005083 PE=4 SV=1[more]
BLAST of ClCG08G013050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G013050.2ClCG08G013050.2mRNA