ClCG08G012020 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G012020
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RNA polymerase sigma factor sigC
Location	CG_Chr08: 24912807 .. 24917278 (+)
RNA-Seq Expression	ClCG08G012020
Synteny	ClCG08G012020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCCAAATTCTTAAAAGGGGATTAAGAATTGGTGGTAGAGAATTTGCAGTTTCGACGTCCACATTTTCACTCATCAGATTGCATGAGTAATTACTACTTCACCATCAAGCTTCTGCCTCTCTCTGGCTCCGATTTTCATGATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGGTTTTCAAATTCAGACTCATTCCCGCAAGACTTCCCCATCGAAGCTTTCTCCATATGCCTGTTAGTTCTTTTTTCTCTTAACTACCTCATGAATTTTTGCTTTGACGTCGATTGATATCTGGGTTTATAATTTGTTTGTGAAATATGAGACGTAGAGCTCGTGTTTAGTTCTTGTGATTGTGAAATTAATCGAGCTCCTGCCTGCTCTCTATTGGGTTTCACATTTTTAAGCTTGCATTGTTCTACTTGTTATCAAAAGTGAGACATTTTAAATTGTTTTGTGATTATCTCGATCATTTGAAAAAGGAAGGTTTTTGGGGTTTACTTGGGAATTTTGTATTGAAGATGATGAACATCCCACCAAAATTTTGCTCCCGAATGATTATATTTAACTTTTTTTAGTTTTTTTGGGGGATTATTAAGCTCTGAAAGTTTTACTGGGGGACTACTGACTACAACTGGACTGATTATGAAGTGAATCTTCGATGATCTCTCTTTAATTTCTTTTCTCCTGCTTGGATGCGAGTGAGAAAGAGCCTCATTGCTTAACACATATTAATTGAATCATCTTTTTAAGGTTGTATGATGATTATTGGCGTTGGGATTGCATTATTGAGTGAGGGTGGTAAAACTCCTTTGGATGGGAATTTCCTTGACCTATGGTGACATCTTCACTCTTATATCCATGCTTCGTTTGGGGCATCCTTTCAAAGAGGATAAAAAGATCCTTTGGCTTAATCATATTCAAGCTTTTTATTGGAACCTTTGGTTAGAACGCAACGCCTGCATCTTCCCAGATAAGAACCGTGACACAAACAATGTTTTTGGGAATTTACCTTGCTTTTTGCACTTACTTGGAGCAAAATGTCTACCTGTTTTCGTAATTATAGTTTTTCTACCCTCGTTAACCAATGGAGGTGTTTTTGGTAATTATTGTCTGATAGAATTTTGCCTTTTTGTATTCAGTTTCATCGTAAATGGTTTCTGTTTCCTATAAAAGTACTACTCGTATTCTCTAATTTGGTTCAGTTCTACATTTTAAAACAGCTAAAGGCAGGGAAGCTGCCTTTAATTCCGGAAAACTTTCCTTCTTCTCCACAATCTGTGAGGAAGGAGAGTCTATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCTGAAGCTCCACAAACCTCATCTGGTGATCTGTTAAATGTGGAAGAGATAGAGGTTAGCCCTTTGCAATGAACTTAACAACACGCACATGTAATCTTGACCTCCCTTAGTTTCTTGCTCTCATTAGGATGGACCTTATATGTTAATGTGGGTTTATTACTCTTTATCTTTCAGATGAACAGTGGGTCAAAGTCATTCACTCCTTTGCATTACGGGATAAAAAATACTTGGCCATCCAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTAGTGGCAAGGCATCACCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAGGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCATTGAGGATGGTGGAGATCATAATGGAAACCAGAAAACCAATGACTGGCATGATGACATCATAGTTTACTCTGGGAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAACGGATAATGCTGATAAAGTTGCTTCCCGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAAATCCATGGTTCGACTATATTTTCGAGAAAAAAAGCATCTAATTCTAGAAAAAGAAGACTGATAGTTGCTAGACATGAAGCTGAAATGTCCACGGGGGCTAAGGTTGATTCATCTTTGATGTTTGCACGACCATCTTTTCAATACATACTATGTTGAACTTCTATCTCATTGCAGGTAGTTGCAAATTTGGAAAGAATTAGAGAAACTTTAGAAAAGGAATCTGGAAAAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGCGTTGATATAAAGGACCTACAAAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCATTAGTTCTATTCCTTGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGTCTATTCACTACTATTCTATGAGAAACCTCAGTTCTTTGGATTTCAATGTTGTTGTTGTTGTTGTTTTTTTTTTTTTTTTTATTTATTTATTTTTTAATGTTTTGTTTTTGAAAGAGTATATGACATCTCTTCCTTTGTTTAATCCTTGATAATAAATCATCATTTACTAGTGCCATTTTTATCTGGTATGAAACCAAACTTCTAGCATCATCTAATTCTTTCTGGAGATAAAAAGCAGATAATGGTTTTTTCAGCTTACGACCGTAAATGACACAAAAAATAAGACGAGGATCATGCTTGATGTTTAAATATTTCATCAAATCAATGCTTAATAAGGAAATTGATGTCAACATATAAATATGTACTCCTCTTTCTTCTATGCCTTCATTAATGCAAATTTTGAATGCTGATGCCTTACAGATAAACATACACTTCTCAATAGAATACAGTAAGGAAAATGCAAGAGGTTATGCATCTTGATGTTTATTTTCTCTTGGATTCGTAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGCTTTAGATTCTCAACATATATTCAGTACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCAGTATGAATCCTTTTACACCAGGATGCCAATTTCGTAACATTTTCATATTCATGTGTAACTGACTCATTTTTATAATTCTTTGTAGTGGTCATTAACCAAGGCAATCAATCAGATACAAAAAGCACGAAAAATGTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCGAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGTATGACTCTCTCACTTTCTCGTTCTCTTTTCCATCAAGGATATCATTAGCTCCCCATTTATCTTTTGAACTCGTCAGACAATTCTGGGCCGTCATATTTTGTCTATTTTGTTTTGCTTTTTCGCATGCTGATTAATTGAGAGCTAAAATTTTGTTTACTGAAGTTGGTTCAACAAAAGCTTATATATTGGTTCAAAAATGCCAACATCTACTTGTAAAGTTGAGCTAACTTAAAAAGAGCACATTTAGAATATACCTTGAGAAAATCTTAAGAATGATATTTTTCTACCAGATGTTACAAATTACAAAATATTTGAAAACTCTGATTTGATATTATATTGCTTTAAACATCTTGTGACTTATGGTGCAGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGGAAGACATCTTTAATGTTCTTGAAGGCTTGGAATCAAGGGAGAGGCAAGTCCTGGTGCTTCGATACGGACTTATGGATTTCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGCATGTAAGCAAGGAATGGGTTCGAAAAATAGAAAAAAAAGCCATGACAAAGCTGCGAAGTGAAGAGACTGTGAAGAACTTCAGCCATTATTTGGATTGATCTACTTCTTTCAAGCTTGGGAACCTCCGGTCTTTTCAAAACTTGCAGCAGGCCAAAGAAGCCAAGACGTTCACATTGCGCTTTCGGGCCATACTAATGAAGTTGGTTACAATGAGCATATCTCAATCCTCAACGATTTCCGTCAAGTAAAAAATTCTGTACAGTTCAATACACGATGCATTACACACCAGCCTCTACACCACTGAAACATCAACCCATACAGTTGCTGGTTCGTGATTTTTGTTGTAAAATATGATCTTTACTTCCATCATTCATTGATGGGGCTGTACATAGAGATGTGCACTTGAGCATGGCCAAACCTTCCATATATACATATATATACATAAGTACATACATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATAGCAATTTTAAGCCATATGGCACAACATGTATTAAATTGTATTTCATATACAGGGCAATTCATGCCATTGTTGTAGAGGTGTATGTCTGGATGA

mRNA sequence

ACTTCCAAATTCTTAAAAGGGGATTAAGAATTGGTGGTAGAGAATTTGCAGTTTCGACGTCCACATTTTCACTCATCAGATTGCATGAGTAATTACTACTTCACCATCAAGCTTCTGCCTCTCTCTGGCTCCGATTTTCATGATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGGTTTTCAAATTCAGACTCATTCCCGCAAGACTTCCCCATCGAAGCTTTCTCCATATGCCTCTAAAGGCAGGGAAGCTGCCTTTAATTCCGGAAAACTTTCCTTCTTCTCCACAATCTGTGAGGAAGGAGAGTCTATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCTGAAGCTCCACAAACCTCATCTGGTGATCTGTTAAATGTGGAAGAGATAGAGATGAACAGTGGGTCAAAGTCATTCACTCCTTTGCATTACGGGATAAAAAATACTTGGCCATCCAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTAGTGGCAAGGCATCACCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAGGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCATTGAGGATGGTGGAGATCATAATGGAAACCAGAAAACCAATGACTGGCATGATGACATCATAGTTTACTCTGGGAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAACGGATAATGCTGATAAAGTTGCTTCCCGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAAATCCATGGTTCGACTATATTTTCGAGAAAAAAAGCATCTAATTCTAGAAAAAGAAGACTGATAGTTGCTAGACATGAAGCTGAAATGTCCACGGGGGCTAAGGTAGTTGCAAATTTGGAAAGAATTAGAGAAACTTTAGAAAAGGAATCTGGAAAAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGCGTTGATATAAAGGACCTACAAAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCATTAGTTCTATTCCTTGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGCTTTAGATTCTCAACATATATTCAGTACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATCAATCAGATACAAAAAGCACGAAAAATGTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCGAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGGAAGACATCTTTAATGTTCTTGAAGGCTTGGAATCAAGGGAGAGGCAAGTCCTGGTGCTTCGATACGGACTTATGGATTTCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGCATCCATTATTTGGATTGATCTACTTCTTTCAAGCTTGGGAACCTCCGGTCTTTTCAAAACTTGCAGCAGGCCAAAGAAGCCAAGACGTTCACATTGCGCTTTCGGGCCATACTAATGAAGTTGGTTACAATGAGCATATCTCAATCCTCAACGATTTCCGTCAAAGGTGTATGTCTGGATGA

Coding sequence (CDS)

ATGATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGGTTTTCAAATTCAGACTCATTCCCGCAAGACTTCCCCATCGAAGCTTTCTCCATATGCCTCTAAAGGCAGGGAAGCTGCCTTTAATTCCGGAAAACTTTCCTTCTTCTCCACAATCTGTGAGGAAGGAGAGTCTATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCTGAAGCTCCACAAACCTCATCTGGTGATCTGTTAAATGTGGAAGAGATAGAGATGAACAGTGGGTCAAAGTCATTCACTCCTTTGCATTACGGGATAAAAAATACTTGGCCATCCAAGGTAGAGGACAATTTTTCTTCCTGTACGAGCTTGCCTAGTGGCAAGGCATCACCTTTTGGCATGTTAATGGAAAACCTTGATGTTTTGGAGGAAACTTTTACTGAATCAGGCATGCTAGGCTTGGAAAGAGATATTGTGCTGCAACTAACAAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCATTGAGGATGGTGGAGATCATAATGGAAACCAGAAAACCAATGACTGGCATGATGACATCATAGTTTACTCTGGGAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCAACGGATAATGCTGATAAAGTTGCTTCCCGGCCGCTAGCTACAAGAGCTGCTAAAGAAAAAATCCATGGTTCGACTATATTTTCGAGAAAAAAAGCATCTAATTCTAGAAAAAGAAGACTGATAGTTGCTAGACATGAAGCTGAAATGTCCACGGGGGCTAAGGTAGTTGCAAATTTGGAAAGAATTAGAGAAACTTTAGAAAAGGAATCTGGAAAAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGCGTTGATATAAAGGACCTACAAAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCATTAGTTCTATTCCTTGCAAAGAAATACCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGCTTTAGATTCTCAACATATATTCAGTACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGGAATTCAAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATCAATCAGATACAAAAAGCACGAAAAATGTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCGAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCCAGCAACTGTTTAAAAGTTGTGGGTTCGGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGAATTTACAGCTGATATGTCAATACAGAGCCCAGAAGAGACTGTGAAGCGAAAACTAATGAAGGAAGACATCTTTAATGTTCTTGAAGGCTTGGAATCAAGGGAGAGGCAAGTCCTGGTGCTTCGATACGGACTTATGGATTTCCAACCCAAGTCGCTCGAGGAAATTGGAAAACTTCTGCATCCATTATTTGGATTGATCTACTTCTTTCAAGCTTGGGAACCTCCGGTCTTTTCAAAACTTGCAGCAGGCCAAAGAAGCCAAGACGTTCACATTGCGCTTTCGGGCCATACTAATGAAGTTGGTTACAATGAGCATATCTCAATCCTCAACGATTTCCGTCAAAGGTGTATGTCTGGATGA

Protein sequence

MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISRETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSLPSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHPLFGLIYFFQAWEPPVFSKLAAGQRSQDVHIALSGHTNEVGYNEHISILNDFRQRCMSG

Homology

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BLAST of ClCG08G012020 vs. NCBI nr
Match: XP_038884658.1 (RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida])

HSP 1 Score: 948.7 bits (2451), Expect = 2.3e-272
Identity = 486/533 (91.18%), Postives = 509/533 (95.50%), Query Frame = 0


Query: 1   MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISR 60
           MMGTSFRPNLKWGFQIQTHSRKTSPSKL PYASKGREAAFNSG+LSFFS+I EEGESISR
Sbjct: 1   MMGTSFRPNLKWGFQIQTHSRKTSPSKLFPYASKGREAAFNSGRLSFFSSIWEEGESISR 60

Query: 61  ETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSL 120
           ETLKTYTCLSEAPQTS+ DLLN+EEIEMN G+KS +PLHYGIKNT PSKVEDNFSSCTS 
Sbjct: 61  ETLKTYTCLSEAPQTSADDLLNLEEIEMNGGAKSLSPLHYGIKNTAPSKVEDNFSSCTSF 120

Query: 121 PSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180
           PSGKASPFGMLMENLDVLEETFTESGML LERDIVLQLTKLGALEFFNTCLSRTLKTSSF
Sbjct: 121 PSGKASPFGMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180

Query: 181 HDLSDLPI----EDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPL 240
           HDLSDLPI    ED GDHN NQKT D +DDIIVYSGKRA RRSVKKRA D+ADKV S+PL
Sbjct: 181 HDLSDLPIEQPTEDDGDHNVNQKTTDENDDIIVYSGKRAVRRSVKKRAMDSADKVYSQPL 240

Query: 241 ATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGK 300
           ATRAAKEKIH S I SRKKASNSRKRRLI+AR+EAEMSTG KVVANLERIRETLEKESG+
Sbjct: 241 ATRAAKEKIHSSAIISRKKASNSRKRRLIIARNEAEMSTGVKVVANLERIRETLEKESGR 300

Query: 301 IASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQA 360
           + SMSCWA+AAGVDIKDL+KQLQFGWFCQDELLRSTNSL+LFLA+KYRCSGLPMEDLVQA
Sbjct: 301 MVSMSCWANAAGVDIKDLKKQLQFGWFCQDELLRSTNSLILFLARKYRCSGLPMEDLVQA 360

Query: 361 GALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKAR 420
           G+LGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN+RGIQIPWSLTKAINQIQKAR
Sbjct: 361 GSLGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNARGIQIPWSLTKAINQIQKAR 420

Query: 421 KMLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSI 480
           K+LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSI
Sbjct: 421 KVLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSI 480

Query: 481 QSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 530
           QSPEETVK+KLMK+DIFNVLEGLESRERQVLVLRYGL+DFQPKSLEEIGKLLH
Sbjct: 481 QSPEETVKQKLMKKDIFNVLEGLESRERQVLVLRYGLVDFQPKSLEEIGKLLH 533

[Close]

BLAST of ClCG08G012020 vs. NCBI nr
Match: XP_008444981.1 (PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo])

HSP 1 Score: 944.5 bits (2440), Expect = 4.4e-271
Identity = 481/529 (90.93%), Postives = 504/529 (95.27%), Query Frame = 0


Query: 1   MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISR 60
           MMGT FRPNLKWGFQIQTHS K SPSKLSPYASKGREAAFNSG+LSFFS+ICEEGESI R
Sbjct: 1   MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPR 60

Query: 61  ETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSL 120
           ETLKTYTCLSEAPQTS  DLLN+EEIEMNSG+KS + LHYGIK+T PSKVEDNFSS TS+
Sbjct: 61  ETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSM 120

Query: 121 PSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180
           P+GKASPFG+LMENLDVLEETF ESGML LERDIVLQLTKLGALEFFNTCLSRTLKTSSF
Sbjct: 121 PTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180

Query: 181 HDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATRA 240
           HDLSDLP+EDG DHN NQKTND + D+ VYSGKRAGRRSVKKRA DNADKVASRPLATRA
Sbjct: 181 HDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRA 240

Query: 241 AKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASM 300
            KEKIH STIFSRKK+SNS KRRL+VAR+EAEMSTG KVVANLERIRETLEKESG+IASM
Sbjct: 241 VKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM 300

Query: 301 SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG 360
           SCWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG
Sbjct: 301 SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG 360

Query: 361 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLN 420
           VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK+LN
Sbjct: 361 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLN 420

Query: 421 NGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPE 480
            GGRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPE
Sbjct: 421 QGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPE 480

Query: 481 ETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 530
           ETVKRKLMK+DIFN+L+GLESRERQVLVLRYGLMDFQPKSLEEIGKLLH
Sbjct: 481 ETVKRKLMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 529

[Close]

BLAST of ClCG08G012020 vs. NCBI nr
Match: KAG6598762.1 (RNA polymerase sigma factor sigC, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 913.3 bits (2359), Expect = 1.1e-261
Identity = 479/579 (82.73%), Postives = 516/579 (89.12%), Query Frame = 0


Query: 2   MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISRE 61
           MGTSFRPNLKW FQIQTHSR+ SPSKLSPYASKGREA+FNSG+LSFFS+ CEEGE+ISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 62  TLKTYTCLSEAPQTSSGDLLNVE--EIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTS 121
            LKTYTCLSEAPQT +  LL++E  EIE+NSG+KS   L YG KN+ PSKVEDNF SCTS
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTS 120

Query: 122 LPSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLK-TS 181
           LP+G+ASPFGMLMENLDVLEETFTESGML LERDI+LQLTKLGALEFFN CLSRTLK +S
Sbjct: 121 LPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASS 180

Query: 182 SFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLAT 241
           SFHDLSDLPIE GGDHN NQKT+D +D+I+VYSGKRAGRRSVK+RA DNADKVASRPLAT
Sbjct: 181 SFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLAT 240

Query: 242 RAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIA 301
           RAAKEK        RKKASNS+KRR IVAR+EAEMSTG KVVANLERIRETLEKESG+ A
Sbjct: 241 RAAKEKFRS----LRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTA 300

Query: 302 SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGA 361
           SMSCWADAA +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA
Sbjct: 301 SMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGA 360

Query: 362 LGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKM 421
           +GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQIPWSLTKAINQIQKARK 
Sbjct: 361 IGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKA 420

Query: 422 LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQS 481
           LNN GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TAD SI+S
Sbjct: 421 LNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIES 480

Query: 482 PEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHPLFGLIYFF 541
           PE+TVKR+LMK+DIFN+LE LESRERQVLVLRYGLMD QPKSLEEIGKLL          
Sbjct: 481 PEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCLQL------ 540

Query: 542 QAWEPPVFSKLAAGQRSQDVHIALSGHTNEVGYNEHISI 578
               PPVFSKLAA QRSQ++ IALSGHT +V     IS+
Sbjct: 541 ----PPVFSKLAAAQRSQEIGIALSGHTTKVFVTTSISL 565

[Close]

BLAST of ClCG08G012020 vs. NCBI nr
Match: XP_004148429.2 (RNA polymerase sigma factor sigC isoform X1 [Cucumis sativus])

HSP 1 Score: 911.0 bits (2353), Expect = 5.3e-261
Identity = 466/529 (88.09%), Postives = 498/529 (94.14%), Query Frame = 0


Query: 1   MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISR 60
           MMGTSFRPNL+WGFQIQTHS K SPSKLSP+ASKGREAAFNSG+LSFFS+ICEEGESI R
Sbjct: 1   MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPR 60

Query: 61  ETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSL 120
           ETLKTYTCLSEAPQTS+ DLLN+EEIEMNSG+KS  P+HYGIK+T PSKVEDNFSSCTSL
Sbjct: 61  ETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSL 120

Query: 121 PSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180
           P+GKASPFG+LMENLDVLEETFTESGML LERDIVLQLTKLGALEFFNTCLSRTLKTSSF
Sbjct: 121 PTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180

Query: 181 HDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATRA 240
           HD S LPIE G DHN NQKTND +D++ VYS K+AGRRSVKKRA DNADK+ASR L TRA
Sbjct: 181 HDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA 240

Query: 241 AKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASM 300
            KEKIH ST+FSRKK+SNS KRRLIVA +EAEMSTG KVVANLERIRETLEKESG+IASM
Sbjct: 241 VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM 300

Query: 301 SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG 360
           SCWA+AA VDIKDLQKQLQFG FC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALG
Sbjct: 301 SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG 360

Query: 361 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLN 420
           VLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQIP SLTKAINQIQKARK+LN
Sbjct: 361 VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLN 420

Query: 421 NGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPE 480
           + GRRYSDDDIA+ATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTADMSIQSPE
Sbjct: 421 HSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPE 480

Query: 481 ETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 530
           ETVKRKLMK+DIFN+L+ LESRERQVLVLRYGL+DF+PKSLEEIGKLLH
Sbjct: 481 ETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLH 529

[Close]

BLAST of ClCG08G012020 vs. NCBI nr
Match: KAA0065060.1 (RNA polymerase sigma factor sigC [Cucumis melo var. makuwa])

HSP 1 Score: 882.5 bits (2279), Expect = 2.0e-252
Identity = 450/497 (90.54%), Postives = 475/497 (95.57%), Query Frame = 0


Query: 33  SKGREAAFNSGKLSFFSTICEEGESISRETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGS 92
           +KGREAAFNSG+LSFFS+ICEEGESI RETLKTYTCLSEAPQTS  DLLN+EEIEMNSG+
Sbjct: 11  AKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGA 70

Query: 93  KSFTPLHYGIKNTWPSKVEDNFSSCTSLPSGKASPFGMLMENLDVLEETFTESGMLGLER 152
           KS + LHYGIK+T PSKVEDNFSS TS+P+GKASPFG+LMENLDVLEETF ESGML LER
Sbjct: 71  KSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLER 130

Query: 153 DIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSG 212
           DIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDG DHN NQKTND + D+ VYSG
Sbjct: 131 DIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSG 190

Query: 213 KRAGRRSVKKRATDNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAE 272
           KRAGRRSVKKRA DNADKVASRPLATRA KEKIH STIFSRKK+SNS KRRL+VAR+EAE
Sbjct: 191 KRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAE 250

Query: 273 MSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRST 332
           MSTG KVVANLERIRETLEKESG+IASMSCWA+AA VDIKDLQKQLQFGWFC+DELLRST
Sbjct: 251 MSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRST 310

Query: 333 NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVV 392
           NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVV
Sbjct: 311 NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVV 370

Query: 393 ARNSRGIQIPWSLTKAINQIQKARKMLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVV 452
           ARNSRGIQIPWSLTKAINQIQKARK+LN GGRRYSDDDIA+ATGLPLAKVRVASNCLKVV
Sbjct: 371 ARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVV 430

Query: 453 GSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYG 512
           GSVDQKMGDGLNMKYMEFTAD SIQSPEETVKR+LMK+DIFN+L+GLESRERQVLVLRYG
Sbjct: 431 GSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYG 490

Query: 513 LMDFQPKSLEEIGKLLH 530
           LMDFQPKSLEEIGKLLH
Sbjct: 491 LMDFQPKSLEEIGKLLH 507

[Close]

BLAST of ClCG08G012020 vs. ExPASy Swiss-Prot
Match: O24621 (RNA polymerase sigma factor sigC OS=Arabidopsis thaliana OX=3702 GN=SIGC PE=2 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 6.2e-103
Identity = 216/485 (44.54%), Postives = 308/485 (63.51%), Query Frame = 0


Query: 46  SFFSTICEEGESISRETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNT 105
           SF S++ EE      ++LK   C S +P T+  ++              +  L    +N 
Sbjct: 86  SFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV--------------YVELKDPKENI 145

Query: 106 WPSKVEDNFSSCTSLPSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALE 165
                E ++SS + L       + +L +NL  LEETF     + +ERDI+LQ+ KLGA E
Sbjct: 146 GVGSAERSYSSRSML------QYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAE 205

Query: 166 FFNTCLSRTLKTSSFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRAT 225
            F TCLSR   +S    LSD    +  D   NQ+       + V S ++  +++ +   T
Sbjct: 206 LFKTCLSRYRGSSITSCLSD--TTELVDTTPNQQ-------VFVSSRRKVKKKARRSSVT 265

Query: 226 DNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLER 285
                 +S P+  R     I    +   ++    RK+R  ++R+E EMSTG K+VA++ER
Sbjct: 266 AENGDQSSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMER 325

Query: 286 IRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRC 345
           IR  LE+ESGK+AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLVLFLA+ YR 
Sbjct: 326 IRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRG 385

Query: 346 SGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSL 405
            G+  EDL+QAG +GVLQG ERFD  RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+
Sbjct: 386 LGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSI 445

Query: 406 TKAINQIQKARKML--NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGL 465
            + IN IQKARK L  ++G +  +D++IAK TG  + K+R A+ CLKVVGS+D+K+GD  
Sbjct: 446 IRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCF 505

Query: 466 NMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEE 525
             K++EFT D +++SPEE V R+  + DI ++LEGLE RE+QV+VLRYGL D++PKSLEE
Sbjct: 506 TTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEE 538

Query: 526 IGKLL 529
           IGKLL
Sbjct: 566 IGKLL 538

[Close]

BLAST of ClCG08G012020 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 3.7e-47
Identity = 103/301 (34.22%), Postives = 189/301 (62.79%), Query Frame = 0


Query: 230 KVASRPLATR-AAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRE 289
           K  S P   R  A+E  H   +   +  ++S K  L+  R E E+S G + +  LER++ 
Sbjct: 239 KTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDLLKLERLQT 298

Query: 290 TLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGL 349
            L + SG+  + + WA AAGVD K L++++  G  C+D++++S   LV+ +AK Y+ +G+
Sbjct: 299 ELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGM 358

Query: 350 PMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKA 409
            ++DLVQ G  G+++G E+FD  +GF+FSTY  +WI++++ + ++  SR I++P+ + +A
Sbjct: 359 NLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEA 418

Query: 410 INQIQKARKML-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKY 469
             ++++ARK L +  G+   +++IA+ATGL + ++       K   S+DQK+G   N+K 
Sbjct: 419 TYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKP 478

Query: 470 MEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKL 529
            E  AD    + E+ + ++ M++D+  VL+ L +RE+QV+  R+G+ D + K+L+EIG++
Sbjct: 479 SEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEM 537

[Close]

BLAST of ClCG08G012020 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-38
Identity = 97/305 (31.80%), Postives = 178/305 (58.36%), Query Frame = 0


Query: 226 DNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLER 285
           D+A    +     R   +K H +    R       + RL+ A  E E++     +  LER
Sbjct: 56  DDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELER 115

Query: 286 IRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRC 345
           +RE L ++  +    S WA+A  + +   + +L  G   +D++++S   LV+ +AKKY  
Sbjct: 116 VRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMN 175

Query: 346 SGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSL 405
            GL  +DL+Q G+LG+++  E+FD ++G++FSTY  +WIR++++R +A  SR I++P  L
Sbjct: 176 RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHL 235

Query: 406 TKAINQIQKARKMLNNG-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLN 465
            + I++I+K  K+L+   GR+ ++++IA    + + K+R  +   ++  S++  +G   +
Sbjct: 236 YETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295

Query: 466 MKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEI 525
            +  +F  +   ++PE+ V + L++ED+  VL+ L  RER VL LRYGL D + K+LEEI
Sbjct: 296 SRLGDF-IESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEI 355

Query: 526 GKLLH 530
           G++ +
Sbjct: 356 GQIFN 359

[Close]

BLAST of ClCG08G012020 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-38
Identity = 101/309 (32.69%), Postives = 181/309 (58.58%), Query Frame = 0


Query: 224 ATDNADKVASRPLATRAAKEKIHGSTIFS--RKKASNSRKRRLIVARHEAEMSTGAKVVA 283
           A D+ D V     A   AK K+  +      R       + RL+ A  E E++     + 
Sbjct: 61  AIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLL 120

Query: 284 NLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAK 343
            LERIR+ L ++  ++ S + WA A    + + +++L  G   +D++++S   LV+ +AK
Sbjct: 121 ALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAK 180

Query: 344 KYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI 403
           KY   GL  +DL+Q G+LG+++  E+FD ++G++FSTY  +WIR++++R +A  SR I++
Sbjct: 181 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 240

Query: 404 PWSLTKAINQIQKARKMLNNG-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMG 463
           P  L + I++I+K  K+L+   GR+ ++++IA    + + K+R  +   ++  S++  +G
Sbjct: 241 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 300

Query: 464 DGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKS 523
              + +  +F  +   ++PE+ V + L++ED+  VL  L  RER VL LRYGL D + K+
Sbjct: 301 KEEDSRLGDF-IEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKT 360

Query: 524 LEEIGKLLH 530
           LEEIG+L +
Sbjct: 361 LEEIGQLFN 368

[Close]

BLAST of ClCG08G012020 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-35
Identity = 92/325 (28.31%), Postives = 183/325 (56.31%), Query Frame = 0


Query: 208 IVYSGKRAGRRSVKKRA--TDNADKVASRPLATRAAKEKIHGSTIFSRKKAS--NSRKRR 267
           IV S ++  RR+  +RA  +++ D     P  T A K+   G+      +        ++
Sbjct: 187 IVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQ 246

Query: 268 LIVARHEAEMSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWF 327
           L+ A+ EAE+ +  + +  LE+++  LE ++G   ++  WA+A G+    L+  +  G  
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306

Query: 328 CQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYW 387
            +++L+ +   LV+ +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G RF+TY  +W
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 366

Query: 388 IRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK-MLNNGGRRYSDDDIAKATGLPLAKV 447
           IR+S+ + + +NSR I++P ++   + ++ +ARK  +  G  R S +++A   G+   K+
Sbjct: 367 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 426

Query: 448 RVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESR 507
                  +   S+ Q +    +  + E T D  I++P  +V ++LM+  + N+L  L  +
Sbjct: 427 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 486

Query: 508 ERQVLVLRYGLMDFQPKSLEEIGKL 528
           ER+++ LR+G+   + +SL EIG++
Sbjct: 487 ERRIIKLRFGIDGGKQRSLSEIGEI 511

[Close]

BLAST of ClCG08G012020 vs. ExPASy TrEMBL
Match: A0A1S3BBM8 (RNA polymerase sigma factor sigC OS=Cucumis melo OX=3656 GN=LOC103488161 PE=3 SV=1)

HSP 1 Score: 944.5 bits (2440), Expect = 2.1e-271
Identity = 481/529 (90.93%), Postives = 504/529 (95.27%), Query Frame = 0


Query: 1   MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISR 60
           MMGT FRPNLKWGFQIQTHS K SPSKLSPYASKGREAAFNSG+LSFFS+ICEEGESI R
Sbjct: 1   MMGTCFRPNLKWGFQIQTHSLKNSPSKLSPYASKGREAAFNSGRLSFFSSICEEGESIPR 60

Query: 61  ETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSL 120
           ETLKTYTCLSEAPQTS  DLLN+EEIEMNSG+KS + LHYGIK+T PSKVEDNFSS TS+
Sbjct: 61  ETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGAKSLSSLHYGIKSTRPSKVEDNFSSPTSM 120

Query: 121 PSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180
           P+GKASPFG+LMENLDVLEETF ESGML LERDIVLQLTKLGALEFFNTCLSRTLKTSSF
Sbjct: 121 PTGKASPFGILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180

Query: 181 HDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATRA 240
           HDLSDLP+EDG DHN NQKTND + D+ VYSGKRAGRRSVKKRA DNADKVASRPLATRA
Sbjct: 181 HDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRA 240

Query: 241 AKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASM 300
            KEKIH STIFSRKK+SNS KRRL+VAR+EAEMSTG KVVANLERIRETLEKESG+IASM
Sbjct: 241 VKEKIHSSTIFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASM 300

Query: 301 SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG 360
           SCWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG
Sbjct: 301 SCWAEAASVDIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG 360

Query: 361 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLN 420
           VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK+LN
Sbjct: 361 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLN 420

Query: 421 NGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPE 480
            GGRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPE
Sbjct: 421 QGGRRYSDDDIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPE 480

Query: 481 ETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 530
           ETVKRKLMK+DIFN+L+GLESRERQVLVLRYGLMDFQPKSLEEIGKLLH
Sbjct: 481 ETVKRKLMKKDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 529

[Close]

BLAST of ClCG08G012020 vs. ExPASy TrEMBL
Match: A0A0A0LLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372830 PE=3 SV=1)

HSP 1 Score: 911.0 bits (2353), Expect = 2.6e-261
Identity = 466/529 (88.09%), Postives = 498/529 (94.14%), Query Frame = 0


Query: 1   MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISR 60
           MMGTSFRPNL+WGFQIQTHS K SPSKLSP+ASKGREAAFNSG+LSFFS+ICEEGESI R
Sbjct: 1   MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPR 60

Query: 61  ETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSL 120
           ETLKTYTCLSEAPQTS+ DLLN+EEIEMNSG+KS  P+HYGIK+T PSKVEDNFSSCTSL
Sbjct: 61  ETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSL 120

Query: 121 PSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180
           P+GKASPFG+LMENLDVLEETFTESGML LERDIVLQLTKLGALEFFNTCLSRTLKTSSF
Sbjct: 121 PTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSF 180

Query: 181 HDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATRA 240
           HD S LPIE G DHN NQKTND +D++ VYS K+AGRRSVKKRA DNADK+ASR L TRA
Sbjct: 181 HDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA 240

Query: 241 AKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASM 300
            KEKIH ST+FSRKK+SNS KRRLIVA +EAEMSTG KVVANLERIRETLEKESG+IASM
Sbjct: 241 VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM 300

Query: 301 SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG 360
           SCWA+AA VDIKDLQKQLQFG FC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALG
Sbjct: 301 SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG 360

Query: 361 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLN 420
           VLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQIP SLTKAINQIQKARK+LN
Sbjct: 361 VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLN 420

Query: 421 NGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPE 480
           + GRRYSDDDIA+ATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTADMSIQSPE
Sbjct: 421 HSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPE 480

Query: 481 ETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 530
           ETVKRKLMK+DIFN+L+ LESRERQVLVLRYGL+DF+PKSLEEIGKLLH
Sbjct: 481 ETVKRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLH 529

[Close]

BLAST of ClCG08G012020 vs. ExPASy TrEMBL
Match: A0A5A7VCX9 (RNA polymerase sigma factor sigC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003890 PE=3 SV=1)

HSP 1 Score: 882.5 bits (2279), Expect = 9.9e-253
Identity = 450/497 (90.54%), Postives = 475/497 (95.57%), Query Frame = 0


Query: 33  SKGREAAFNSGKLSFFSTICEEGESISRETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGS 92
           +KGREAAFNSG+LSFFS+ICEEGESI RETLKTYTCLSEAPQTS  DLLN+EEIEMNSG+
Sbjct: 11  AKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSPDDLLNLEEIEMNSGA 70

Query: 93  KSFTPLHYGIKNTWPSKVEDNFSSCTSLPSGKASPFGMLMENLDVLEETFTESGMLGLER 152
           KS + LHYGIK+T PSKVEDNFSS TS+P+GKASPFG+LMENLDVLEETF ESGML LER
Sbjct: 71  KSLSSLHYGIKSTRPSKVEDNFSSPTSMPTGKASPFGILMENLDVLEETFAESGMLSLER 130

Query: 153 DIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSG 212
           DIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDG DHN NQKTND + D+ VYSG
Sbjct: 131 DIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVEDGEDHNVNQKTNDQNCDVTVYSG 190

Query: 213 KRAGRRSVKKRATDNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAE 272
           KRAGRRSVKKRA DNADKVASRPLATRA KEKIH STIFSRKK+SNS KRRL+VAR+EAE
Sbjct: 191 KRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSSTIFSRKKSSNSSKRRLVVARNEAE 250

Query: 273 MSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRST 332
           MSTG KVVANLERIRETLEKESG+IASMSCWA+AA VDIKDLQKQLQFGWFC+DELLRST
Sbjct: 251 MSTGIKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGWFCRDELLRST 310

Query: 333 NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVV 392
           NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVV
Sbjct: 311 NSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVV 370

Query: 393 ARNSRGIQIPWSLTKAINQIQKARKMLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVV 452
           ARNSRGIQIPWSLTKAINQIQKARK+LN GGRRYSDDDIA+ATGLPLAKVRVASNCLKVV
Sbjct: 371 ARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDDDIARATGLPLAKVRVASNCLKVV 430

Query: 453 GSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYG 512
           GSVDQKMGDGLNMKYMEFTAD SIQSPEETVKR+LMK+DIFN+L+GLESRERQVLVLRYG
Sbjct: 431 GSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMKKDIFNILQGLESRERQVLVLRYG 490

Query: 513 LMDFQPKSLEEIGKLLH 530
           LMDFQPKSLEEIGKLLH
Sbjct: 491 LMDFQPKSLEEIGKLLH 507

[Close]

BLAST of ClCG08G012020 vs. ExPASy TrEMBL
Match: A0A6J1BRC1 (RNA polymerase sigma factor sigC isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004887 PE=3 SV=1)

HSP 1 Score: 882.1 bits (2278), Expect = 1.3e-252
Identity = 452/530 (85.28%), Postives = 483/530 (91.13%), Query Frame = 0


Query: 2   MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISRE 61
           MGTSFRPNLKW FQ+QTHSR  SPSK  P+ASKGREA+FNS +LSFFS ICEEGES SRE
Sbjct: 1   MGTSFRPNLKWAFQMQTHSRNCSPSKFYPHASKGREASFNSARLSFFSAICEEGESSSRE 60

Query: 62  TLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSLP 121
           TLKTYTCLSEAPQTS+ DLL+++EIE+NS ++  +  HYGIKNT PSK+EDNFSSCTSLP
Sbjct: 61  TLKTYTCLSEAPQTSADDLLDLDEIEINSRARPLSHFHYGIKNTGPSKIEDNFSSCTSLP 120

Query: 122 SGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLK--TSS 181
           +GKAS FGMLMENLDVLEE FTESGML LERDIVLQLTKLGALEFFNTCLSRTLK  TSS
Sbjct: 121 TGKASHFGMLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSS 180

Query: 182 FHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATR 241
           F DLSDLPIEDGG HN NQKT+  +DDIIVYSGK+ GRRS+K+RA D ADKVAS+P AT 
Sbjct: 181 FLDLSDLPIEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATG 240

Query: 242 AAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIAS 301
           AAKEK H S  F RK+  NSR+RRL+VAR+EAEMSTG KVVANLERIRETLEKES K AS
Sbjct: 241 AAKEKFHNSARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRAS 300

Query: 302 MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAL 361
           MSCWADAAG+DIKDL KQLQFGWFCQ+ELLRSTNSLVLFLAKKYRC+GLPMEDLVQAGA+
Sbjct: 301 MSCWADAAGIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAI 360

Query: 362 GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKML 421
           GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK L
Sbjct: 361 GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL 420

Query: 422 NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSP 481
           NNG RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSP
Sbjct: 421 NNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSP 480

Query: 482 EETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLH 530
           EETVK+KLMK+DIFN+LEGLE RERQVL LRYGL DFQPKSLEEIGKLLH
Sbjct: 481 EETVKQKLMKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLH 530

[Close]

BLAST of ClCG08G012020 vs. ExPASy TrEMBL
Match: A0A6J1KA34 (RNA polymerase sigma factor sigC-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492024 PE=3 SV=1)

HSP 1 Score: 881.3 bits (2276), Expect = 2.2e-252
Identity = 454/528 (85.98%), Postives = 488/528 (92.42%), Query Frame = 0


Query: 2   MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREAAFNSGKLSFFSTICEEGESISRE 61
           MGTSFRPNLKW FQIQTHSR+ SPSKLSPYASKGREA+FNSG+LSFFS+ CEEGE+ISRE
Sbjct: 1   MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISRE 60

Query: 62  TLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNTWPSKVEDNFSSCTSLP 121
            LKTYTCLSEAPQT +  LL++EE E+NSG+KS + LHYG KN+ PSKVEDNF SCTSLP
Sbjct: 61  ALKTYTCLSEAPQTLADGLLDLEEKEINSGAKSLSHLHYGSKNSGPSKVEDNFCSCTSLP 120

Query: 122 SGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALEFFNTCLSRTLK-TSSF 181
           +G+ASPF MLMENLDVLEETFTESGML LERDIVLQLTKLGALEFFN CLSRTLK +SSF
Sbjct: 121 TGRASPFDMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASSSF 180

Query: 182 HDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRATDNADKVASRPLATRA 241
            DLSDLPIE GGDHN NQKT+D + +IIVYSGKRAGRRSVK+RA DNADKVASRPLATRA
Sbjct: 181 RDLSDLPIEVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLATRA 240

Query: 242 AKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRETLEKESGKIASM 301
           AKEK       SRKKASNS+KRR IVAR+EAEMSTG KVVANLERIRETLEKESG+ ASM
Sbjct: 241 AKEKFRS----SRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASM 300

Query: 302 SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALG 361
           SCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+G
Sbjct: 301 SCWADASSIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIG 360

Query: 362 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLN 421
           VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQIPWSLTKAINQIQKARK LN
Sbjct: 361 VLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALN 420

Query: 422 NGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPE 481
           N GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TAD SI+SPE
Sbjct: 421 NSGRRYSDDDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPE 480

Query: 482 ETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLL 529
           +TVKR+LMK+DIFN+LE LESRERQVLVLRYGLMD QPKSLEEIGKLL
Sbjct: 481 DTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLL 524

[Close]

BLAST of ClCG08G012020 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 376.3 bits (965), Expect = 4.4e-104
Identity = 216/485 (44.54%), Postives = 308/485 (63.51%), Query Frame = 0


Query: 46  SFFSTICEEGESISRETLKTYTCLSEAPQTSSGDLLNVEEIEMNSGSKSFTPLHYGIKNT 105
           SF S++ EE      ++LK   C S +P T+  ++              +  L    +N 
Sbjct: 86  SFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNV--------------YVELKDPKENI 145

Query: 106 WPSKVEDNFSSCTSLPSGKASPFGMLMENLDVLEETFTESGMLGLERDIVLQLTKLGALE 165
                E ++SS + L       + +L +NL  LEETF     + +ERDI+LQ+ KLGA E
Sbjct: 146 GVGSAERSYSSRSML------QYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAE 205

Query: 166 FFNTCLSRTLKTSSFHDLSDLPIEDGGDHNGNQKTNDWHDDIIVYSGKRAGRRSVKKRAT 225
            F TCLSR   +S    LSD    +  D   NQ+       + V S ++  +++ +   T
Sbjct: 206 LFKTCLSRYRGSSITSCLSD--TTELVDTTPNQQ-------VFVSSRRKVKKKARRSSVT 265

Query: 226 DNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLER 285
                 +S P+  R     I    +   ++    RK+R  ++R+E EMSTG K+VA++ER
Sbjct: 266 AENGDQSSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMER 325

Query: 286 IRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRC 345
           IR  LE+ESGK+AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLVLFLA+ YR 
Sbjct: 326 IRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRG 385

Query: 346 SGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSL 405
            G+  EDL+QAG +GVLQG ERFD  RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+
Sbjct: 386 LGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSI 445

Query: 406 TKAINQIQKARKML--NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGL 465
            + IN IQKARK L  ++G +  +D++IAK TG  + K+R A+ CLKVVGS+D+K+GD  
Sbjct: 446 IRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCF 505

Query: 466 NMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEE 525
             K++EFT D +++SPEE V R+  + DI ++LEGLE RE+QV+VLRYGL D++PKSLEE
Sbjct: 506 TTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEE 538

Query: 526 IGKLL 529
           IGKLL
Sbjct: 566 IGKLL 538

[Close]

BLAST of ClCG08G012020 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 191.0 bits (484), Expect = 2.6e-48
Identity = 103/301 (34.22%), Postives = 189/301 (62.79%), Query Frame = 0


Query: 230 KVASRPLATR-AAKEKIHGSTIFSRKKASNSRKRRLIVARHEAEMSTGAKVVANLERIRE 289
           K  S P   R  A+E  H   +   +  ++S K  L+  R E E+S G + +  LER++ 
Sbjct: 239 KTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDLLKLERLQT 298

Query: 290 TLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGL 349
            L + SG+  + + WA AAGVD K L++++  G  C+D++++S   LV+ +AK Y+ +G+
Sbjct: 299 ELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGM 358

Query: 350 PMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKA 409
            ++DLVQ G  G+++G E+FD  +GF+FSTY  +WI++++ + ++  SR I++P+ + +A
Sbjct: 359 NLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEA 418

Query: 410 INQIQKARKML-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKY 469
             ++++ARK L +  G+   +++IA+ATGL + ++       K   S+DQK+G   N+K 
Sbjct: 419 TYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKP 478

Query: 470 MEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRERQVLVLRYGLMDFQPKSLEEIGKL 529
            E  AD    + E+ + ++ M++D+  VL+ L +RE+QV+  R+G+ D + K+L+EIG++
Sbjct: 479 SEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEM 537

[Close]

BLAST of ClCG08G012020 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-36
Identity = 92/325 (28.31%), Postives = 183/325 (56.31%), Query Frame = 0


Query: 208 IVYSGKRAGRRSVKKRA--TDNADKVASRPLATRAAKEKIHGSTIFSRKKAS--NSRKRR 267
           IV S ++  RR+  +RA  +++ D     P  T A K+   G+      +        ++
Sbjct: 187 IVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQ 246

Query: 268 LIVARHEAEMSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWF 327
           L+ A+ EAE+ +  + +  LE+++  LE ++G   ++  WA+A G+    L+  +  G  
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306

Query: 328 CQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYW 387
            +++L+ +   LV+ +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G RF+TY  +W
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 366

Query: 388 IRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK-MLNNGGRRYSDDDIAKATGLPLAKV 447
           IR+S+ + + +NSR I++P ++   + ++ +ARK  +  G  R S +++A   G+   K+
Sbjct: 367 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 426

Query: 448 RVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESR 507
                  +   S+ Q +    +  + E T D  I++P  +V ++LM+  + N+L  L  +
Sbjct: 427 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 486

Query: 508 ERQVLVLRYGLMDFQPKSLEEIGKL 528
           ER+++ LR+G+   + +SL EIG++
Sbjct: 487 ERRIIKLRFGIDGGKQRSLSEIGEI 511

[Close]

BLAST of ClCG08G012020 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-29
Identity = 73/205 (35.61%), Postives = 120/205 (58.54%), Query Frame = 0


Query: 325 QDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWI 384
           ++++ R    LV+ +A  Y+  GL ++DL+Q G++G+L+G ERFDP RG++ STY+ +WI
Sbjct: 180 REKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWI 239

Query: 385 RKSMSRVVARNSRGIQIPWSLTKAINQIQKARKMLNNGGRRY-SDDDIAKATGLPLAKVR 444
           ++++ R +A  SR +++P S+ +   ++ +A  +L    RR  S ++IA+   L ++ VR
Sbjct: 240 KQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVR 299

Query: 445 VASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKRKLMKEDIFNVLEGLESRE 504
           +A    +   S+D+       M   E         PEE VKR+ MK +I  +L  L +RE
Sbjct: 300 LAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARE 359

Query: 505 RQVLVLRYGLMDFQPKSLEEIGKLL 529
            +VL L +GL    P S EEIGK L
Sbjct: 360 SRVLGLYFGLNGETPMSFEEIGKSL 384

[Close]

BLAST of ClCG08G012020 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-23
Identity = 88/326 (26.99%), Postives = 164/326 (50.31%), Query Frame = 0


Query: 207 IIVYSGKRAGRRSVKKRATDNADKVASRPLATRAAKEKIHGSTIFSRKKASNSRKRRLIV 266
           +I  SG  A +R +  +   N   V  + ++  ++ +++ G   + +   S      + V
Sbjct: 151 VITCSGISARQRRIGAKKKTNMTHV--KAVSDVSSGKQVRG---YVKGVISEDVLSHVEV 210

Query: 267 ARHEAEMSTGAKVVANLERIRETLEKESGKIASMSCWADAAGVDIKDLQKQLQFGWFCQD 326
            R   ++ +G ++  +  R+++ L    G   S    A +  +   +LQ  L      ++
Sbjct: 211 VRLSKKIKSGLRLDDHKSRLKDRL----GCEPSDEQLAVSLKISRAELQAWLMECHLARE 270

Query: 327 ELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRK 386
           +L  S   LV+ +A++Y   G  M DLVQ G +G+L+G+E+FD  +GFR STY+ +WIR+
Sbjct: 271 KLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQ 330

Query: 387 SMSRVVARNSRGIQIPWSLTKAINQIQKARKMLNNGGRRYSDDDIAKATGLPLAKVRVAS 446
            +SR +  NSR +++P  L + +  I+ A+  L   G   S D IA++  +   KVR A+
Sbjct: 331 GVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNAT 390

Query: 447 NCLKVVGSVDQKMGDGLN----MKYMEFTADMSIQ-SPEETVKRKLMKEDIFNVLEG-LE 506
             +  V S+D+     LN      +  + AD  ++ +P        +KE++  ++   L 
Sbjct: 391 EAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLG 450

Query: 507 SRERQVLVLRYGLMDFQPKSLEEIGK 527
            RE++++ L YGL D +  + E+I K
Sbjct: 451 EREKEIIRLYYGL-DKECLTWEDISK 466

The following BLAST results are available for this feature:

BLAST of ClCG08G012020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884658.1	2.3e-272	91.18	RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida]	[more]
XP_008444981.1	4.4e-271	90.93	PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo]	[more]
KAG6598762.1	1.1e-261	82.73	RNA polymerase sigma factor sigC, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_004148429.2	5.3e-261	88.09	RNA polymerase sigma factor sigC isoform X1 [Cucumis sativus]	[more]
KAA0065060.1	2.0e-252	90.54	RNA polymerase sigma factor sigC [Cucumis melo var. makuwa]	[more]

BLAST of ClCG08G012020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24621	6.2e-103	44.54	RNA polymerase sigma factor sigC OS=Arabidopsis thaliana OX=3702 GN=SIGC PE=2 SV...	[more]
O22056	3.7e-47	34.22	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.4e-38	31.80	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	1.8e-38	32.69	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q9LD95	4.2e-35	28.31	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of ClCG08G012020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBM8	2.1e-271	90.93	RNA polymerase sigma factor sigC OS=Cucumis melo OX=3656 GN=LOC103488161 PE=3 SV...	[more]
A0A0A0LLW1	2.6e-261	88.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372830 PE=3 SV=1	[more]
A0A5A7VCX9	9.9e-253	90.54	RNA polymerase sigma factor sigC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1BRC1	1.3e-252	85.28	RNA polymerase sigma factor sigC isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1KA34	2.2e-252	85.98	RNA polymerase sigma factor sigC-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of ClCG08G012020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53920.1	4.4e-104	44.54	RNApolymerase sigma-subunit C	[more]
AT1G08540.1	2.6e-48	34.22	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	3.0e-36	28.31	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	1.2e-29	35.61	sigma factor 4	[more]
AT1G64860.1	2.2e-23	26.99	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 352..365 score: 44.06 coord: 520..535 score: 29.44 coord: 499..511 score: 45.36 coord: 376..384 score: 62.37
None	No IPR available	GENE3D	1.20.120.1810		coord: 213..397 e-value: 2.1E-30 score: 108.0
None	No IPR available	GENE3D	1.20.140.160		coord: 400..529 e-value: 1.8E-13 score: 52.9
None	No IPR available	PANTHER	PTHR30603:SF13	RNA POLYMERASE SIGMA FACTOR SIGC	coord: 11..529
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 11..529
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 326..528 e-value: 2.7E-21 score: 73.9
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 495..528 e-value: 1.3E-6 score: 27.8
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 332..397 e-value: 4.5E-14 score: 52.0
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 408..482 e-value: 7.7E-8 score: 32.3
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 267..397
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 459..528
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 401..473

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G012020.2	ClCG08G012020.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity