ClCG08G009700 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G009700
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionribosomal protein L16
LocationCG_Chr08: 22400139 .. 22402285 (+)
RNA-Seq ExpressionClCG08G009700
SyntenyClCG08G009700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGAGCTGAGGCTCCCATGTCCCGCCGACCCTCCGAAAAAGTCAGGTCGTCAAACGGCTCATAGGGAGTCAGAAGCAAGTGGAGTCAAAGGCGGGTCAAACTCACATAAGCGGAGGGGGAGACACATTCATGAAAAGCAAGAAGCCGCGGGGGACTGGCCAACTATGAATAGATATCTGACTTTCGGGTAAGAGTATGAACATCTATTAGTCCGTATCATGGGTCTACTTGTTACAAAAGGCGAACATCCCTATTCCAAAACATACACATAAGTCCTCAGGCAGGCGGGGACGAAAAGAGTCTATTTCTTTACAATATTCCGGAATGTATCATGGCCCTATCTATTCATCTTTTTATTAAAAAAAAAAAGAGTTCTGCATCTCCCCGAGGCCGGGAGAACAAATAGGCGTGAGGAAGAGGGAGAGGGGGGGCTTCCTGGTTGGCTTCACGATTAACTTGAGTGATGGTCCACTCCCCCAAGGTTTTCCAGCTTGTTTAGGAGATGGTTAACCTTTAACAGGTACCGAGCCATTACGTCATCTTTTGCTTTGAATCCCCCTACGACCTGTTCCACCACTAACTGTGAATCGCTGTGGATGGTCAAGGATTCGGCTTTGACCTCAACGGCAAACCTAAGTCCTGCCAACAAGGCCTCATATTCAGCAACATTATTCGTTGCTGGAAAGGATAACCTAGCTGCATATTCCATCTTTATTAACGACGGACCCTGTAGGATTACCCCAATTCCAGCCCCTGTTTCATTCTGTGAACCATCAACATGGAGTGTCCAAGCTGTAGCTGTACGTTCAACCTGTGGAACCTCGGTGGAACCAGCCATTTCCATAACGAAGTCTGCCAGCACTTGGGCCTCTAAGGCAGTTTTTGGTTCATAACGAATGTCATGCTCCCCAAGTTCGACTCACCTTTGCACCAATCTCCTTGATGTTTCAGGTCGTTGCAAGGCTTTACGCAATGGTTGATCAGTCCTAACAACTATAGGGTGAGCTTGAAAATAATGCTTAAGCTTCTTGGCTGTCATCACAACTGCTCGAATTCGCCGCTGGGGAAGTCACACGAAAGGGAACGAGTAATTCTCAACGAAAAAAGTGCTCTCTGAACCGAACGTGAAAGTCGTTTTCCATCAGACAGCTGTTTCCGTAACTCCACTCTCGACTTGGATTATATATCCAAAAAGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCAGAGGCGTGGTTATCTGAAGTGGATTCTCTCTTTTCTAGTGGATGCCGAACCTGCTGCCCCATTGACTAAGAAGGGGGCGGGCGCAGCAGCTACATGGACCCCTTCCTTTCTTTTGTTGCCAGCGCTTTCGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAATCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTCAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTTCCGGGAAACCTACAGAAGTTAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATAAACCATGTTCGTCAACCAAGTTTGTTCAGTGGTCGTAACGTAATTAATTGGTTAGTGGGGATAAACCGGGCCGGGAGGGTGTAACTTCTTCTACACGAACCAGTCGGCGAGATGGGCGGACCCAGGACGGTTCAAGGGGAACTTTCTTGCGGGATGGGTTCTCCAATTCAAGCAAGTCTAGCAAGGTCTCGATCTTTACAAGGCCTTTTTCGTTATGGTTTCAACAAGGACCAAGATTTGTGGAAGCCTCTGAAAAAGAAACTTACTTAGGAGAGAATTCTGCAGAATTGGAGAGCACAACACTTCTAGTGCCACTGCCACTGAGGAAGTCTCGCAAAGGTCACATATTACTTGTTAAGACAGCTGACTATTGGTCAATCAAATCCCAAATTAGTCGAAATTCGAGCTTGGAAAAATTGGTTCCTTGA

mRNA sequence

ATGCATGAGCTGAGGCTCCCATGTCCCGCCGACCCTCCGAAAAAGTCAGGTCGTCAAACGGCTCATAGGGAGTCAGAAGCAAGTGGAGTCAAAGGCGGGTCAAACTCACATAAGCGGAGGGGGAGACACATTCATGAAAAGCAAGAAGCCGCGGGGGACTGGCCAACTATGAATAGATATCTGACTTTCGGCTGTTTCCGTAACTCCACTCTCGACTTGGATTATATATCCAAAAAGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCAGAGGCGTGCGCTTTCGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAATCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTCAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTTCCGGGAAACCTACAGAAGTTAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATAAACCATGTTCGTCAACCAATCGGCGAGATGGGCGGACCCAGGACGGTTCAAGGGGAACTTTCTTGCGGGATGGGTTCTCCAATTCAAGCAAGTCTAGCAAGGTCTCGATCTTTACAAGGCCTTTTTCGTTATGGTTTCAACAAGGACCAAGATTTGTGGAAGCCTCTGAAAAAGAAACTTACTTAGGAGAGAATTCTGCAGAATTGGAGAGCACAACACTTCTAGTGCCACTGCCACTGAGGAAGTCTCGCAAAGGTCACATATTACTTGTTAAGACAGCTGACTATTGGTCAATCAAATCCCAAATTAGTCGAAATTCGAGCTTGGAAAAATTGGTTCCTTGA

Coding sequence (CDS)

ATGCATGAGCTGAGGCTCCCATGTCCCGCCGACCCTCCGAAAAAGTCAGGTCGTCAAACGGCTCATAGGGAGTCAGAAGCAAGTGGAGTCAAAGGCGGGTCAAACTCACATAAGCGGAGGGGGAGACACATTCATGAAAAGCAAGAAGCCGCGGGGGACTGGCCAACTATGAATAGATATCTGACTTTCGGCTGTTTCCGTAACTCCACTCTCGACTTGGATTATATATCCAAAAAGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCAGAGGCGTGCGCTTTCGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCAAATCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTCAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTTCCGGGAAACCTACAGAAGTTAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATAAACCATGTTCGTCAACCAATCGGCGAGATGGGCGGACCCAGGACGGTTCAAGGGGAACTTTCTTGCGGGATGGGTTCTCCAATTCAAGCAAGTCTAGCAAGGTCTCGATCTTTACAAGGCCTTTTTCGTTATGGTTTCAACAAGGACCAAGATTTGTGGAAGCCTCTGAAAAAGAAACTTACTTAGGAGAGAATTCTGCAGAATTGGAGAGCACAACACTTCTAGTGCCACTGCCACTGAGGAAGTCTCGCAAAGGTCACATATTACTTGTTAAGACAGCTGACTATTGGTCAATCAAATCCCAAATTAGTCGAAATTCGAGCTTGGAAAAATTGGTTCCTTGA

Protein sequence

MHELRLPCPADPPKKSGRQTAHRESEASGVKGGSNSHKRRGRHIHEKQEAAGDWPTMNRYLTFGCFRNSTLDLDYISKKVRSRPFHTLPSRGVRFRTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTNRRDGRTQDGSRGTFLRDGFSNSSKSSKVSIFTRPFSLWFQQGPRFVEASEKETYLGENSAELESTTLLVPLPLRKSRKGHILLVKTADYWSIKSQISRNSSLEKLVP
Homology
[Close]
BLAST of ClCG08G009700 vs. NCBI nr
Match: YP_009913655.1 (ribosomal protein L16 [Luffa acutangula] >QLJ93051.1 ribosomal protein L16 [Luffa acutangula])

HSP 1 Score: 245.4 bits (625), Expect = 7.0e-61
Identity = 123/133 (92.48%), Postives = 124/133 (93.23%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII        G
Sbjct: 41  RTKYSKYRKGRCSRGCKPDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFHRAMSG 100

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRNGKIWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 101 QFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 160

Query: 216 AATLAAHKPCSST 221
           AATLAAHKPCSST
Sbjct: 161 AATLAAHKPCSST 173

[Close]
BLAST of ClCG08G009700 vs. NCBI nr
Match: YP_003587232.1 (ribosomal protein L16 [Citrullus lanatus] >ACV96644.1 ribosomal protein L16 [Citrullus lanatus])

HSP 1 Score: 245.0 bits (624), Expect = 9.2e-61
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFRRNGKI 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYG QSCRAGRLSYRAIEAARRAIIGQFRRNGKI
Sbjct: 6   RTKYSKYRKGRCSRGCKPDGTQLGFGRYGIQSCRAGRLSYRAIEAARRAIIGQFRRNGKI 65

Query: 156 WVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHK 215
           WVRV ADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQI FEMDGVSLSNARQAATLAAHK
Sbjct: 66  WVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHK 125

Query: 216 PCSST 221
           PCSST
Sbjct: 126 PCSST 130

[Close]
BLAST of ClCG08G009700 vs. NCBI nr
Match: YP_009709943.1 (ribosomal protein L16 [Manihot esculenta] >QFO87096.1 ribosomal protein L16 [Manihot esculenta])

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-60
Identity = 125/147 (85.03%), Postives = 129/147 (87.76%), Query Frame = 0 

Query: 85  FHTLPSRGVRF---RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAA 144
           FH +  RG      RTKYSKYRKGRCSRGCK DGTQLGFGRYGT+SC+AGRLSYRAIEAA
Sbjct: 19  FHIVKKRGDMLYPKRTKYSKYRKGRCSRGCKLDGTQLGFGRYGTKSCKAGRLSYRAIEAA 78

Query: 145 RRAII--------GQFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQI 204
           RRAII        GQFRRNGKIWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQI
Sbjct: 79  RRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 138

Query: 205 PFEMDGVSLSNARQAATLAAHKPCSST 221
           PFEMDGVSLSNARQAATLAAHKPCSST
Sbjct: 139 PFEMDGVSLSNARQAATLAAHKPCSST 165

[Close]
BLAST of ClCG08G009700 vs. NCBI nr
Match: YP_010021234.1 (ribosomal protein L16 [Malania oleifera] >QOK99914.1 ribosomal protein L16 [Malania oleifera])

HSP 1 Score: 243.8 bits (621), Expect = 2.0e-60
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYGT+SCRAGRLSYRAIEAARRAII        G
Sbjct: 6   RTKYSKYRKGRCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMSG 65

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRNGKIWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 66  QFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 125

Query: 216 AATLAAHKPCSST 221
           AATLAAHKPCSST
Sbjct: 126 AATLAAHKPCSST 138

[Close]
BLAST of ClCG08G009700 vs. NCBI nr
Match: AEN56098.1 (ribosomal protein L16 [Cucumis melo subsp. melo] >AZP40302.1 ribosomal protein L16 [Cucumis melo var. momordica])

HSP 1 Score: 243.8 bits (621), Expect = 2.0e-60
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII        G
Sbjct: 6   RTKYSKYRKGRCSRGCKPDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFHRAMSG 65

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRNG+IWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 66  QFRRNGQIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 125

Query: 216 AATLAAHKPCSST 221
           AATLAAHKPCSST
Sbjct: 126 AATLAAHKPCSST 138

[Close]
BLAST of ClCG08G009700 vs. ExPASy Swiss-Prot
Match: P46801 (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.4e-58
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKY K RCSRGC+ DGTQLGFGRYGT+SCRAGRLSYRAIEAARRA I        G
Sbjct: 47  RTKYSKYSKCRCSRGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSG 106

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRN KIWVRVLADLPI+GKP EVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 107 QFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 166

Query: 216 AATLAAHKPCSST 221
           AA LAAHKPCSST
Sbjct: 167 AARLAAHKPCSST 179

[Close]
BLAST of ClCG08G009700 vs. ExPASy Swiss-Prot
Match: P49389 (60S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3 SV=2)

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-57
Identity = 114/145 (78.62%), Postives = 121/145 (83.45%), Query Frame = 0 

Query: 85  FHTLPSRGVRFRTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRA 144
           FH +  +G     K +KY KGRCSRGCK DGT+LGFGRYGT+SCRAGRLSYRAIEAARRA
Sbjct: 27  FHIVKKKGDVLYPKRTKYSKGRCSRGCKPDGTKLGFGRYGTKSCRAGRLSYRAIEAARRA 86

Query: 145 II---------GQFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPF 204
            I         GQFRRN KIWVRVLADLPI+GKP EVRMGRGKGNPTGWIARVSTGQIPF
Sbjct: 87  TIGHSFRRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPF 146

Query: 205 EMDGVSLSNARQAATLAAHKPCSST 221
           EMDGVSL+NARQAA LAAHKPCSST
Sbjct: 147 EMDGVSLANARQAARLAAHKPCSST 171

[Close]
BLAST of ClCG08G009700 vs. ExPASy Swiss-Prot
Match: Q95747 (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL16 PE=1 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 3.8e-57
Identity = 116/147 (78.91%), Postives = 123/147 (83.67%), Query Frame = 0 

Query: 85  FHTLPSRG---VRFRTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAA 144
           FH +  +G      RTKYSKYRKGRCSRGCK DGT+LGFGRYG +SC+AG LSYRAIEAA
Sbjct: 27  FHIVKKKGDVLYPKRTKYSKYRKGRCSRGCKPDGTKLGFGRYGIKSCKAGCLSYRAIEAA 86

Query: 145 RRAII--------GQFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQI 204
           RRAII        GQFRRNGKIWVRV ADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQI
Sbjct: 87  RRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 146

Query: 205 PFEMDGVSLSNARQAATLAAHKPCSST 221
            FEMDGVSL+NARQAATLAAHK C ST
Sbjct: 147 LFEMDGVSLANARQAATLAAHKLCLST 173

[Close]
BLAST of ClCG08G009700 vs. ExPASy Swiss-Prot
Match: P27927 (60S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-55
Identity = 113/133 (84.96%), Postives = 116/133 (87.22%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKY K RCSRG + DGTQLGFGRYGT+S RAGRLSYRAIEAARRA I        G
Sbjct: 47  RTKYSKYSKCRCSRGREPDGTQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSG 106

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRN KIWVRVLADLPI+GKP EVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 107 QFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 166

Query: 216 AATLAAHKPCSST 221
           AA LAAHKPCSST
Sbjct: 167 AARLAAHKPCSST 179

[Close]
BLAST of ClCG08G009700 vs. ExPASy Swiss-Prot
Match: Q04715 (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.1e-54
Identity = 107/121 (88.43%), Postives = 110/121 (90.91%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYGT+SCRAGRLSYRAIEAARRAII        G
Sbjct: 33  RTKYSKYRKGRCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSG 92

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 209
           QFRRNGKIWVRVLAD+PI+GKPTEVRMGRGKGNPTGWIARVS GQI FEMDGVSLSNARQ
Sbjct: 93  QFRRNGKIWVRVLADIPITGKPTEVRMGRGKGNPTGWIARVSRGQILFEMDGVSLSNARQ 152

[Close]
BLAST of ClCG08G009700 vs. ExPASy TrEMBL
Match: A0A7D6C0E5 (Ribosomal protein L16 OS=Luffa acutangula OX=56866 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-61
Identity = 123/133 (92.48%), Postives = 124/133 (93.23%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII        G
Sbjct: 41  RTKYSKYRKGRCSRGCKPDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFHRAMSG 100

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRNGKIWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 101 QFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 160

Query: 216 AATLAAHKPCSST 221
           AATLAAHKPCSST
Sbjct: 161 AATLAAHKPCSST 173

[Close]
BLAST of ClCG08G009700 vs. ExPASy TrEMBL
Match: D5I3A2 (Ribosomal protein L16 OS=Citrullus lanatus OX=3654 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 4.4e-61
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFRRNGKI 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYG QSCRAGRLSYRAIEAARRAIIGQFRRNGKI
Sbjct: 6   RTKYSKYRKGRCSRGCKPDGTQLGFGRYGIQSCRAGRLSYRAIEAARRAIIGQFRRNGKI 65

Query: 156 WVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHK 215
           WVRV ADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQI FEMDGVSLSNARQAATLAAHK
Sbjct: 66  WVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLSNARQAATLAAHK 125

Query: 216 PCSST 221
           PCSST
Sbjct: 126 PCSST 130

[Close]
BLAST of ClCG08G009700 vs. ExPASy TrEMBL
Match: A0A5J6Y2L9 (Ribosomal protein L16 OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 5.8e-61
Identity = 125/147 (85.03%), Postives = 129/147 (87.76%), Query Frame = 0 

Query: 85  FHTLPSRGVRF---RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAA 144
           FH +  RG      RTKYSKYRKGRCSRGCK DGTQLGFGRYGT+SC+AGRLSYRAIEAA
Sbjct: 19  FHIVKKRGDMLYPKRTKYSKYRKGRCSRGCKLDGTQLGFGRYGTKSCKAGRLSYRAIEAA 78

Query: 145 RRAII--------GQFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQI 204
           RRAII        GQFRRNGKIWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQI
Sbjct: 79  RRAIIGQFHRAMSGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 138

Query: 205 PFEMDGVSLSNARQAATLAAHKPCSST 221
           PFEMDGVSLSNARQAATLAAHKPCSST
Sbjct: 139 PFEMDGVSLSNARQAATLAAHKPCSST 165

[Close]
BLAST of ClCG08G009700 vs. ExPASy TrEMBL
Match: A0A7L9QAD0 (Ribosomal protein L16 OS=Malania oleifera OX=397392 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 9.9e-61
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYGT+SCRAGRLSYRAIEAARRAII        G
Sbjct: 6   RTKYSKYRKGRCSRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFHRAMSG 65

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRNGKIWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 66  QFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 125

Query: 216 AATLAAHKPCSST 221
           AATLAAHKPCSST
Sbjct: 126 AATLAAHKPCSST 138

[Close]
BLAST of ClCG08G009700 vs. ExPASy TrEMBL
Match: G3EU15 (Ribosomal protein L16 OS=Cucumis melo subsp. melo OX=412675 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 9.9e-61
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII--------G 155
           RTKYSKYRKGRCSRGCK DGTQLGFGRYGTQSCRAGRLSYRAIEAARRAII        G
Sbjct: 6   RTKYSKYRKGRCSRGCKPDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFHRAMSG 65

Query: 156 QFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 215
           QFRRNG+IWVRVLADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ
Sbjct: 66  QFRRNGQIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQ 125

Query: 216 AATLAAHKPCSST 221
           AATLAAHKPCSST
Sbjct: 126 AATLAAHKPCSST 138

[Close]
BLAST of ClCG08G009700 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 238.8 bits (608), Expect = 6.1e-63
Identity = 121/147 (82.31%), Postives = 128/147 (87.07%), Query Frame = 0 

Query: 85  FHTLPSRG---VRFRTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAA 144
           FH +  +G      RTKYSKYRKGRCSRGCK DGT+LGFGRYGT+SC+AGRLSYRAIEAA
Sbjct: 27  FHIVKKKGDVLYPKRTKYSKYRKGRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAA 86

Query: 145 RRAII--------GQFRRNGKIWVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQI 204
           RRAII        GQFRRNGKIWVRV ADLPI+GKPTEVRMGRGKGNPTGWIARVSTGQI
Sbjct: 87  RRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 146

Query: 205 PFEMDGVSLSNARQAATLAAHKPCSST 221
           PFEMDGVSL+NARQAATLAAHKPCSST
Sbjct: 147 PFEMDGVSLANARQAATLAAHKPCSST 173

[Close]
BLAST of ClCG08G009700 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-22
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFRRNGKI 155
           RT++ K  +GR  +G  S G ++ FGRY  Q+     ++ R IEA RRA+    RR GKI
Sbjct: 6   RTRFRKQHRGRL-KGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKI 65

Query: 156 WVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHK 215
           WVR+  D P++ +P E RMG GKG+P  W+A V  G+I +EM GV  + AR+A ++AA K
Sbjct: 66  WVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASK 124

[Close]
BLAST of ClCG08G009700 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-18
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 0 

Query: 96  RTKYSKYRKGRCSRGCKSDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAIIGQFRRNGKI 155
           RTK+ K+ +GR ++G  S G      RY  Q+     ++ R IEA RRA+     R   +
Sbjct: 834 RTKFQKHHRGRINKGVSSQGYIC--SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTV 893

Query: 156 WVRVLADLPISGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHK 215
            V + AD P++ +P E RMGRGKG P  W+A V  G+I +EM GVS   AR+A ++AA K
Sbjct: 894 RVHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAASK 951

The following BLAST results are available for this feature:
BLAST of ClCG08G009700 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009913655.17.0e-6192.48ribosomal protein L16 [Luffa acutangula] >QLJ93051.1 ribosomal protein L16 [Luff... [more]
YP_003587232.19.2e-6196.00ribosomal protein L16 [Citrullus lanatus] >ACV96644.1 ribosomal protein L16 [Cit... [more]
YP_009709943.11.2e-6085.03ribosomal protein L16 [Manihot esculenta] >QFO87096.1 ribosomal protein L16 [Man... [more]
YP_010021234.12.0e-6091.73ribosomal protein L16 [Malania oleifera] >QOK99914.1 ribosomal protein L16 [Mala... [more]
AEN56098.12.0e-6091.73ribosomal protein L16 [Cucumis melo subsp. melo] >AZP40302.1 ribosomal protein L... [more]
BLAST of ClCG08G009700 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P468013.4e-5886.4760S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
P493891.3e-5778.6260S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3... [more]
Q957473.8e-5778.9160S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
P279271.2e-5584.9660S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1[more]
Q047155.1e-5488.4360S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=... [more]
BLAST of ClCG08G009700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7D6C0E53.4e-6192.48Ribosomal protein L16 OS=Luffa acutangula OX=56866 GN=rpl16 PE=3 SV=1[more]
D5I3A24.4e-6196.00Ribosomal protein L16 OS=Citrullus lanatus OX=3654 GN=rpl16 PE=3 SV=1[more]
A0A5J6Y2L95.8e-6185.03Ribosomal protein L16 OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1[more]
A0A7L9QAD09.9e-6191.73Ribosomal protein L16 OS=Malania oleifera OX=397392 GN=rpl16 PE=3 SV=1[more]
G3EU159.9e-6191.73Ribosomal protein L16 OS=Cucumis melo subsp. melo OX=412675 GN=rpl16 PE=3 SV=1[more]
BLAST of ClCG08G009700 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00080.16.1e-6382.31ribosomal protein L16 [more]
ATCG00790.11.4e-2245.00ribosomal protein L16 [more]
AT2G28830.13.5e-1841.67PLANT U-BOX 12 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 149..178
score: 57.33
coord: 179..208
score: 50.47
coord: 115..127
score: 47.69
coord: 133..144
score: 61.67
IPR000114Ribosomal protein L16TIGRFAMTIGR01164TIGR01164coord: 96..215
e-value: 1.1E-35
score: 120.4
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 95..220
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 96..217
e-value: 1.6E-36
score: 125.2
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 115..215
e-value: 4.48033E-37
score: 126.837
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 95..238
e-value: 2.9E-42
score: 146.5
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 96..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availablePANTHERPTHR12220:SF2160S RIBOSOMAL PROTEIN L16, MITOCHONDRIALcoord: 95..220
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 150..161
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 173..184

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G009700.1ClCG08G009700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome