ClCG08G008460 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G008460
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSHSP domain-containing protein
LocationCG_Chr08: 20950617 .. 20951178 (+)
RNA-Seq ExpressionClCG08G008460
SyntenyClCG08G008460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTTCTCTCTTGCATATACAAACACTTGCTATACCCTTCTAATTCATTCTTTGGTGGTGGATTGAAGCAATTTCAAGTACAGAGTTTTCCATTTTGTCCATTCCTTCTCCTCAAATTTTCACCTTTCAACATATCCCAGAAAGATTTTTTTCGATGTCAAGCCAGATCGTAACTCCAAATCGGAGATCCGTAACTCAACCAAATCAACAGTTTTTTCCAGATAAAAGATGGGAGGATGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGGTAAATTTGGCTAAAGTTAACTAGATTGATATAGATTTGTGTGTATAAATTAATTACGTTCGTTCGATTTGGTGTAGGTTTTTCAAAAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGACAAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTATATTACATTTCCCAAAAACAGATAA

mRNA sequence

ATGCTTCTTCTCTCTTGCATATACAAACACTTGCTATACCCTTCTAATTCATTCTTTGGTGGTGGATTGAAGCAATTTCAATTTTTTCCAGATAAAAGATGGGAGGATGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGGTTTTTCAAAAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGACAAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTATATTACATTTCCCAAAAACAGATAA

Coding sequence (CDS)

ATGCTTCTTCTCTCTTGCATATACAAACACTTGCTATACCCTTCTAATTCATTCTTTGGTGGTGGATTGAAGCAATTTCAATTTTTTCCAGATAAAAGATGGGAGGATGATGAAGAAAATAACCAAATGTCATTGAGCATGGTACTTCCAGGTTTTTCAAAAGATCGACTACGAATCAACTTGAATACAAGAACAAGGACTCTTATAGTTACGGGACAAAAATCAGATGGCTTATTCAATATTATGCGTTTGAACGAACGCATACAAATCAACGAAGCATGCTCATTAGATGGAGTACATGCAAAATTACTCAACAACAATCTGTATATTACATTTCCCAAAAACAGATAA

Protein sequence

MLLLSCIYKHLLYPSNSFFGGGLKQFQFFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNERIQINEACSLDGVHAKLLNNNLYITFPKNR
Homology
BLAST of ClCG08G008460 vs. NCBI nr
Match: KAE8646641.1 (hypothetical protein Csa_005322 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 27  QFFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNE 86
           QFFP   +E+ EE N+ S SM LPGFSKDRLRINLNTRTR ++VTGQKSDGLFNI RLNE
Sbjct: 63  QFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRIIVVTGQKSDGLFNITRLNE 122

Query: 87  RIQINEACSLDGVHAKLLNNNLYITFPKNR 117
           R+ I E C L+GV AKL N+ L +TF K +
Sbjct: 123 RVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 152

BLAST of ClCG08G008460 vs. NCBI nr
Match: KAG7016359.1 (hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 28  FFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNER 87
           F PD +W   EE +   LSM LPGF K+RL+I LN  TRTL VTGQK DGLFNI+RLNER
Sbjct: 20  FSPDTKWA--EEEHSRILSMKLPGFPKNRLQITLNAATRTLTVTGQKQDGLFNIIRLNER 79

Query: 88  IQINEACSLDGVHAKLLNNNLYITFPKNR 117
           I I++ CSLDGV A+L ++ L++TF K +
Sbjct: 80  ISIDDTCSLDGVFARLHDHTLFVTFSKKK 106

BLAST of ClCG08G008460 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 4.0e-19
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 28  FFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNER 87
           F PD +W   EE +   LSM LPGF K++L+I LN  TRTL VTGQK DGLFNI+RLNER
Sbjct: 20  FSPDTKWA--EEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIRLNER 79

Query: 88  IQINEACSLDGVHAKLLNNNLYITFPKNR 117
           I I++ CSLDGV A+L +  L++TF K +
Sbjct: 80  ISIDDTCSLDGVFARLHDQTLFVTFSKKK 106

BLAST of ClCG08G008460 vs. NCBI nr
Match: KAG6602241.1 (hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-08
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 30  PDKRWEDDEENNQMSLSMVL--PGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNER 89
           P+  W++ +E N+    M++   G S+++L+I+++   RT+ +   K +G +NI R+NE 
Sbjct: 20  PNVEWKERKETNKDYFEMIIDFSGCSRNQLQISMSRELRTIDIMTTKKEG-YNIARVNET 79

Query: 90  IQINEACSLDGVHAKLLNNNLYITFPK 115
           I I   CSLD V+A  +NN+L ITFPK
Sbjct: 80  IPIRPECSLDNVYASFVNNDLIITFPK 105

BLAST of ClCG08G008460 vs. NCBI nr
Match: XP_018475449.1 (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Raphanus sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 0

Query: 20  GGGLKQFQFFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLF 79
           G G++   F P   W+D  E   +++   LPGF+K+++++     +R + VTG++  G  
Sbjct: 11  GLGVQYEDFVPKSEWKDQPEATVLTID--LPGFTKEQIKVTYVHTSRMIRVTGERLLGDR 70

Query: 80  NIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK 115
              R NE   + + C +D +H  L NN L IT PK
Sbjct: 71  RWSRFNEVFTVPQNCLVDKIHGSLKNNALTITMPK 103

BLAST of ClCG08G008460 vs. ExPASy TrEMBL
Match: A0A0A0KB53 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.3e-25
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 27  QFFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNE 86
           QFFP   +E+ EE N+ S SM LPGFSKDRLRINLNTRTR ++VTGQKSDGLFNI RLNE
Sbjct: 20  QFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRIIVVTGQKSDGLFNITRLNE 79

Query: 87  RIQINEACSLDGVHAKLLNNNLYITFPKNR 117
           R+ I E C L+GV AKL N+ L +TF K +
Sbjct: 80  RVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 109

BLAST of ClCG08G008460 vs. ExPASy TrEMBL
Match: A0A6J1FGX8 (uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC111445297 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 28  FFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNER 87
           F PD +W   EE +   LSM LPGF K++L+I LN  TRTL VTGQK DGLFNI+RLNER
Sbjct: 20  FSPDTKWA--EEEHSRILSMKLPGFPKNQLQITLNAATRTLTVTGQKQDGLFNIIRLNER 79

Query: 88  IQINEACSLDGVHAKLLNNNLYITFPKNR 117
           I I++ CSLDGV A+L +  L++TF K +
Sbjct: 80  ISIDDTCSLDGVFARLHDQTLFVTFSKKK 106

BLAST of ClCG08G008460 vs. ExPASy TrEMBL
Match: A0A6J0MTF1 (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Raphanus sativus OX=3726 GN=LOC108846742 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.4e-06
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 0

Query: 20  GGGLKQFQFFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLF 79
           G G++   F P   W+D  E   +++   LPGF+K+++++     +R + VTG++  G  
Sbjct: 11  GLGVQYEDFVPKSEWKDQPEATVLTID--LPGFTKEQIKVTYVHTSRMIRVTGERLLGDR 70

Query: 80  NIMRLNERIQINEACSLDGVHAKLLNNNLYITFPK 115
              R NE   + + C +D +H  L NN L IT PK
Sbjct: 71  RWSRFNEVFTVPQNCLVDKIHGSLKNNALTITMPK 103

BLAST of ClCG08G008460 vs. ExPASy TrEMBL
Match: A0A067ECS7 (SHSP domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035730mg PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 28  FFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNER 87
           F P   W D+ ENN   L + LP F+K+++RI     +R + VTG++  G     R N+ 
Sbjct: 19  FHPMSEWLDEPENN--ILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDNKWSRCNQA 78

Query: 88  IQINEACSLDGVHAKLLNNNLYITFPK 115
             I   C +D +HAK  N  L +T PK
Sbjct: 79  FPIPSNCKIDKIHAKWNNAILTVTMPK 103

BLAST of ClCG08G008460 vs. ExPASy TrEMBL
Match: V4VZG1 (SHSP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10016030mg PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 28  FFPDKRWEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQKSDGLFNIMRLNER 87
           F P   W D+ ENN   L + LP F+K+++RI     +R + VTG++  G     R N+ 
Sbjct: 19  FHPMSEWLDEPENN--ILLVHLPDFTKEQIRITCVRSSRIVRVTGERQLGDDKWSRCNQA 78

Query: 88  IQINEACSLDGVHAKLLNNNLYITFPK 115
             I   C +D +HAK  N  L +T PK
Sbjct: 79  FPIPSNCKIDKIHAKWNNAILTVTMPK 103

BLAST of ClCG08G008460 vs. TAIR 10
Match: AT4G27670.1 (heat shock protein 21 )

HSP 1 Score: 44.3 bits (103), Expect = 7.8e-05
Identity = 24/90 (26.67%), Postives = 49/90 (54.44%), Query Frame = 0

Query: 34  WEDDEENNQMSLSMVLPGFSKDRLRINLNTRTRTLIVTGQK----SDGLF---NIMRLNE 93
           W+  EE +++ +   +PG SK+ ++I++      L++ G++    SD  +   ++     
Sbjct: 129 WDIKEEEHEIKMRFDMPGLSKEDVKISV--EDNVLVIKGEQKKEDSDDSWSGRSVSSYGT 188

Query: 94  RIQINEACSLDGVHAKLLNNNLYITFPKNR 117
           R+Q+ + C  D + A+L N  L+IT PK +
Sbjct: 189 RLQLPDNCEKDKIKAELKNGVLFITIPKTK 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646641.11.1e-2466.67hypothetical protein Csa_005322 [Cucumis sativus][more]
KAG7016359.11.1e-1959.55hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022939359.14.0e-1958.43uncharacterized protein LOC111445297 [Cucurbita moschata][more]
KAG6602241.14.2e-0839.08hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_018475449.11.9e-0532.63PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Raphanus sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KB535.3e-2566.67SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 S... [more]
A0A6J1FGX81.9e-1958.43uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
A0A6J0MTF19.4e-0632.63inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Raphanus sativus OX=3726 GN=L... [more]
A0A067ECS71.4e-0436.78SHSP domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035730mg PE... [more]
V4VZG11.4e-0436.78SHSP domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10016030m... [more]
Match NameE-valueIdentityDescription
AT4G27670.17.8e-0526.67heat shock protein 21 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 27..116
e-value: 4.4E-9
score: 38.1
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 33..114
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 23..116
score: 11.843872
NoneNo IPR availableCDDcd00298ACD_sHsps_p23-likecoord: 38..114
e-value: 9.9871E-6
score: 38.7243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G008460.2ClCG08G008460.2mRNA