ClCG08G007810 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G007810
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
LocationCG_Chr08: 20354246 .. 20354813 (+)
RNA-Seq ExpressionClCG08G007810
SyntenyClCG08G007810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGTGCAATGGTGGTGGAGTAATTTCATCAACGAGTAGAAGTGTTGCTCAGTGGGAGACGTTCTTTTTAGGTTTAAGGGCTTAAGAACTTGACTTTTTGTTGGGCATTTCCTAGTTTTCACCCAAATAGGTTATATCGAGGTCAAATTTGCTCTTTAAACGATAGATCTGCAAGTGTTGGAGGCACCTTGTGTGACAAGGTTCAAGTTGTTGGACACATTGCAGGGCTTTGAAGGGAAATCCTTCGAAGTATATCATTTAATTTCTCCTTAAATGATTTGCTTGGAAGGAAAAATAAGTCGTCAGATATTTTAATTGTTTTGTACGAATTGTATTTCTTGCATTAACAATAAATGGGCTTGAACTATGAAATAATTTAAATACTAATTCATCTATAATAATGCAAATTCCTTGGATGAGATTCTCTTGTGATGTTTATATAGATCATGTTAGAATGAGATATAGGTTGTCCCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTCGAGGAATGGATGATGCAATCAGGAGATGCATGGGCAGGAGTTTGGTGAGCGAATTATCTCAG

mRNA sequence

GCTGTGCAATGGTGGTGGAGTAATTTCATCAACGAGTAGAAGTGTTGCTCAGTGGGAGACGTTCTTTTTAGATCATGTTAGAATGAGATATAGGTTGTCCCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTCGAGGAATGGATGATGCAATCAGGAGATGCATGGGCAGGAGTTTGGTGAGCGAATTATCTCAG

Coding sequence (CDS)

ATGAGATATAGGTTGTCCCGTGGGTTTGGTTTTATTACCTTTGCAGACCGTCGAGGAATGGATGATGCAATCAGGAGATGCATGGGCAGGAGTTTGGTGAGCGAATTATCTCAG

Protein sequence

MRYRLSRGFGFITFADRRGMDDAIRRCMGRSLVSELSQ
Homology
[Close]
BLAST of ClCG08G007810 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 7.5e-05
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 0 

Query: 7  RGFGFITFADRRGMDDAIRRCMGRSL 33
          RGFGFITF DRRG DDAI+   GR L
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGREL 78

[Close]
BLAST of ClCG08G007810 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 7.5e-05
Identity = 19/26 (73.08%), Postives = 20/26 (76.92%), Query Frame = 0 

Query: 7  RGFGFITFADRRGMDDAIRRCMGRSL 33
          RGFGFITF DRRG DDAI+   GR L
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGREL 78

[Close]
BLAST of ClCG08G007810 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 7.5e-05
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 6  SRGFGFITFADRRGMDDAIRRCMGR 31
          SRGFGFITFADRR MD++IR   GR
Sbjct: 47 SRGFGFITFADRRAMDESIREMHGR 71

The following BLAST results are available for this feature:
BLAST of ClCG08G007810 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG08G007810 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG08G007810 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG08G007810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G60650.17.5e-0573.08RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT1G60650.27.5e-0573.08RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT5G04280.17.5e-0576.00RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 6..32
e-value: 2.7E-5
score: 23.9
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G007810.1ClCG08G007810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding