ClCG08G007160 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G007160
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	tRNA pseudouridine(38/39) synthase
Location	CG_Chr08: 19573887 .. 19585544 (-)
RNA-Seq Expression	ClCG08G007160
Synteny	ClCG08G007160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGCACGAATGAAAATTGGCTAAATAAAAAGAAACTTGACATTCTACTGATGTGAACACGCCACGGAATCACCGATTCCACCTGCGAATGGACCGAAAGTGAAAGTGGATCTCGTTTCTTCCTCTCATTTCTCGATCCTTCGTCTCGCTTCTCTGCATCTCTCGTCTTCGATTCTAATTTGACTCGCGATCAATTCCGAATGTCCTTTGAACTTTGGGGACTTACCTCTTTTGCAGTGGCCGTCTGAACTTTGGGGCTCTATTTCTCGACGTACAAGGGCTAATGGACGGAGCGGAACATTCTCTTGATCACAGAGAAACTACCGGAGCAATCGGGACGACCTCAGGAGCTAACGAGTTTCAACCATTCGATGGAAACCAAATTGCGAGTCTTCAATCCCAGCTTCTTCTTCTCCAAGGCAGGGTTAAGGTTTGACCGTCTACCCTCATTTCAACTTCCGCTTGGTTAATGTCAGTGACTAAGTGGCGAAGTATCGGGAGAGCCATGACAGATGTTCGATCTTAATCCACTAATCTGACAGGAATTGGAGGAGGAAAATTCGAAGCTATCCTCTCGACTTGCTACTTGCCGCTGTTCCGAGGTTTGGTCGACTATAGTAGAATGAAATCAGAGCTATTTGGTTCTCATGCTAGGCTAGCTAGCCTTATTCAGACTTTTCTTCAGGGCTAACTAAACACGAATTCGTGCAGAGGAGGATGAACTCTGACGACGGGAGTAGATCGATTGAGAAAAGCAAGGAATCTGGCACCACTAAGAAGAAAGCAGTAGAAAAAACGCCAGGCTAGTCATTACTTTATGACCAAATAGAGTCTGTTTGTTTATTCCTCCATATTTGCACATATATATCCATATCCATGATAGCATGGTGGAGTAGTAGTAGCTCACACGTACATACGGTTAAGAATGCCATTCATATCTTGTAATGTAATGAGATCACTATGAAACTTAAGATTATGAAATGATGATTTGTGAGTTTGAACTATAGTCCAATTATGCATTAGCAGATGACAAAATATTCAACGAGGCTGGTACAATGTGGCTGCCTCACCAAATAATATTCATGCCCCTAATAACACGGATATAAACTCAAGTTACTAAATCCAACGGTAAACCTTCCGCTGCATTGTGTCAACCACATCAAAGGTGAAAAGTAATGCAACTCAGTCTAAAAATAGCAAGCCTGTTTTTATTTTCCTTCAAAATTTTAAATATTTATTTTACGAGCAACAGACGTCTGGAATGTTTATGAAGTTTAGATGAAATAATTTCTCATGCATATTATCAACCTTGTTTATAATATATCACAAGAGTCATGTTCCATCTTTCTTTTGCGAGGATTATCTACTGGAATTATTTGCTTGTTTCTACTCTCAAATTTAGTTATTTTATGGGTGAAGGTTATAACACAAGGATCTTGGATCACTGTCCAAAGAGATATATTGCTCTAAAAATAATGTATTTCGGTCAAAGGTATGTAATCTTGTCATAATGGGAACAAGACCAGTGCCTTTTACTTTCCCCTGCTAATTTTTTCCGTAGATTACAGTCCTTCAGTACCTTCTCCTGAAGTAAGGAGAAATCTTGTCTAAAAAAAAAAAGAACAAACAACAGAAGAGTCAATACTAGTTGTCACTAAAACTATTCTCTCGTCGTTGCTCTTGTTATATTGCAAAATTTAACTTTGTATCAAATAATGCCTGAAGTTCTGGTTACATCATCTGTACAGGTTCTACGGTTTTGCTTCAGAGGCACAAATGGAACCAACAGTTGAAGTACAGTTTCAAATTGAGCTTCTTAACAAATTATTTATGATTTATCAATTACAATGGTACTGGTGGGAAATGTTAAGAACGCACAAGATTGGTTTGCCATGTTTACTGGGGGTGCCTGAACATTTAATAAAGCATTTAGAGGATCATAATATCAAATTTTTTTTTTAAACCTTCCATCTTTTCTAATTGATATTTGCTCACACCATCTGTTACAACCCATCATGCGATTCTCAAGAGCAAATATATGGTTTTCTTTGTCAACAAATTCTCTCACGTTCCTGCTTGCTAAGGAATAACTTTAAGATTATTTTCATGCTGTGCTTAATTATGGATTTGGATTATAATAAAGAATGCTAGAAAATACAATCAATAATGATTCTGGTTCTTCTGATTAGTTGCATGAGTTTGAGTCATAAATCTCTTAAGCATGAATGATGAGGTAACCATACTCCCAAGATTTCAGAGGCTTGGATCTCTCCTGAGTTTCACTCCAGTAATAGTAATTAGCCCCTCTGACCTTCACCCTTGCAAACCCTTCTTCCAGTCACCCTCTCTTCACCTTTCCCTCTCTTTCGTGATTCTCTTGCGGTCCCAAAAGAGATAGATGGAGCCAAAGGTGAACAAAAAAAAGGAGTTGTCACTGATAAAGACTTTTGATAAAATTGATTGGGGAACATTTGGATACTATATACAAGTTGAAAGGCTTAGGCAATAGACGAGCATGACTTCATGCGTAAGACCATGGTCTGGGTGGGTGTTACATTTAGCATCAATTTATTTAAGGGAGGGGGTAACAGTAGATATGGTGGTTGTGAGGAATGTTGGGTAAGAAGAAATTTAATTGTTAATTTTTTATCCATAAAATTATTGTCAATTTGTTATCTCATCTTCCTGCAGTCTGAAATTTTCAGAGCTCTTGAGAAAGCCAGGCTTCTTGTTGGTGGTAGGAAGGAGTCTTGTTATTCAAGATGTGGGAGAACGGACAGGGGAGTCTCATCTGTTGGACAAGTAAGATGTTTCAAATATGTAGGGATTAGGGAATAACATTGTGCGGCTAGAATAACATTGTACGATGATAACGTTCTGAATACTTTGATTTCTTCGTCATGAATTAGGTCACTTTTGGTTTTCCATTAGCTGTTCAAAATTACATTTCCTGCCACCTCTTACATGTCCTTGGGGGGTTTGGTTGAGGTGTGGAATGGAAACTGAAATTTAATAATTCCTCTTTTATGTAGTTGACTAGGACTGTTTTGCAATGTTCTTTATGTCTCCCTCATTTGTACAAACACATGAAAATCTTGCTCGAAAAGCTTAATATTTTTAATATGAAAACCGAAGAGATGAAGATGGATAATATTATTCTTTTTGTTATTTAGGTTTTTCTTCTATGGATCTATTATTATAATTATCAAGGCTACAGTTCGGTGACCAAATTTGGCTTTTAATTTAAATTTATATTACAAAAGCTTTTCTGGTTCCGTAAGTCATCAGTCATCTAGTGCTCAGAGAATCAGAATTAATTGGGCAACTTTGTTGACCTTTCTATCATCATTTGATTTAATTTTCCCCTTTTAAGCATTTGCATTATTGTTCCTGCAGGTAATTTCTCTCTATTTGCGGTCAAACCTTAAGGATCCCCCTGATGGTGCAAATAGTAATCATAATGAGGAGCAACATGGTGAGCTAAGTTGATGTTGTCAAAGTTGATCTCTGTTTTTATACCTTGCATGTTGAATCATTCTAATGAGCTGAATGACGACATTGAGTGCGTCAGATTTTTTGCTTTCTGTTTTACATGGATGTATTCTGACTATTTTAATAGTTGATAGATTTTTGTAGCGTTAAGTTACTGCAAATGATTCAACCTACCGTTTTAGTTTACTGTTTTTTTCAAAAATTTAAACTGTCATTTAAAGCATCTCTCTAATTAGCTTTACTATAGGGTGATAATATCTCTTTTAACAAGTGTTTACGTTCACATCACCTAATATATCTTTGCGTTGCTAAACATAACTTTTAATGTTATATAAATTATCAATGGAAGAGCCTTTTATGAATGATAGACTTGATAATGATGGCATTCTTGTTCGAACATCAAAATATAACAGTCTTTACTGCATTAGGAAAGTAGATGGTAGGAAGACTGTATATAGGGAACTGCAAACATCAAAATGTAACAGGTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTANATTTGGCTTTTAATTTAAATTTATATTACAAAAGCTTTTCTGGTTCCGTAAGTCATCAGTCATCTAGTGCTCAGAGAATCAGAATTAATTGGGCAACTTTGTTGACCTTTCTATCATCATTTGATTTAATTTTCCCCTTTTAAGCATTTGCATTATTGTTCCTGCAGGTAATTTCTCTCTATTTGCGGTCAAACCTTAAGGATCCCCCTGATGGTGCAAATAGTAATCATAATGAGGAGCAACATGGTGAGCTAAGTTGATGTTGTCAAAGTTGATCTCTGTTTTTATACCTTGCATGTTGAATCATTCTAATGAGCTGAATGACGACATTGAGTGCGTCAGATTTTTTGCTTTCTGTTTTACATGGATGTATTCTGACTATTTTAATAGTTGATAGATTTTTGTAGCGTTAAGTTACTGCAAATGATTCAACCTACCGTTTTAGTTTACTGTTTTTTTCAAAAATTTAAACTGTCATTTAAAGCATCTCTCTAATTAGCTTTACTATAGGGTGATAATATCTCTTTTAACAAGTGTTTACGTTCACATCACCTAATATATCTTTGCGTTGCTAAACATAACTTTTAATGTTATATAAATTATCAATGGAAGAGCCTTTTATGAATGATAGACTTGATAATGATGGCATTCTTGTTCGAACATCAAAATATAACAGTCTTTACTGCATTAGGAAAGTAGATGGTAGGAAGACTGTATATAGGGAACTGCAAACATCAAAATGTAACAGGTTTTTTTTTTTTTTTTTTTTTTTCTTCCTGAATTTCCCAGTCTATAGGGGTAGGTTCTTTTATTTCTAGTTGAAGTGTTACATACATTTTCCATAATTTCACTTTCATTTATTATTTACTCTCAGATGGAGAAATTGATTATGTGAGAGTAATTAATAGAGTCCTTCCTAATGACATTCGGGTTTTAGGCTGGTGTACTGTTCCTATTGGCTTCAGTGCAAGGTTTGTCTTGCTCTTTTTTTTTTAGATTTATTTATTTCCCTTTGGCCTGTTCTTGTGAGCGATGTGATGTGTAGCTTTTTAATGGGAAGTTAGGGTCATGACACCAGCATCCAGCAGATTTAAAAATCAATCTTACTGGCTTTGACTGCAGAGTTGATGTGCCTACATGAAATTCTGAACATAGCCGAGTGCTATGCTCTAACATTCTAAATGTCGTTACACCTCTCTAAGAGTTGCAGCGACCAGTAGCATCTCCTTGCACCCCTTACCTCATACAAGCAGCTTTACTTGTGTGTTCTTTTTTTCTTTGTTAGATACATCTGGGCTACATGCGCTGCTTAAGTTTTCTAGACATGCTTAACTTTGCCAATGTATGTATTGCATCATGATCTGGGGATGACATTTTATATTACTTTGGGGGCATTGGTTTGAAAACAAGAACCATGTTTAATCTTTGGTTACTTTCAAAAAATTTGAGTTTACACATGTATTACCTTTTTGCTAAAGAATGATATTTTTTACAAGGGACTCAGCCAATAGGGATTATGGTCCATAATTATCTTAAAATTAGTTCTAGAAAAGCTGCATTGTAACTTATACCTAAACAATTCAAGAATGTTCAAATCCACAATTTTGAGTCTTATACTTGATAATCATCAGTACTTTATGATGCTCCACATACATACAGATACTCTATTCAACATGTATGCTTGTATTGTCGGAACAATGTTAATGCTTACTCTGGCATTTCTTGTTGCCTCTATATGCAGCACAGGTTTAGTTGTTTAAGAAGAAAGTATAAATATTTTTTCTGGGGAGCAAATTTGAATATCATGGTATGCAAATCATTTTGTTTTAGGCTTGTAATGCTTTTGCAGAAATAATTTGGATATGCATTTTCACCAGGCTATGGAGAGGGCCGGTAAGAAGTTTGTAGGGGAACACGACTTTAGAAACTTCTGCAAAATGGATGCTGCAAATGTTCATAATTATAGGCGATGCATCATGTCGTTTGACATTTCTCCTTGTGATGTGAGGTTGGTGTTGGTATCAGATCTTCTCATCTGCTTTCCAATTGAAATTTCTGTACAGTGCTTAATCGACATGTGCCTTGCATTTGTATATTTTTATTCTTGAATCTGCTTTGCATATTTGCTTCTCAGGCTGTCAAGCCATCCAAACTAGCCTTCCTCTAGCTATTGTTCAAGCTTATGTTACTTTATTCTCCCCATTGTTGGTCTCTTAAGTCCACTAACTATGTTCTCTCCTAGGTGTTGCCAAGCTGACAGTAGTTTACTAACTAGAACAGTAGTGCTTCTCTGACCATATTCATTTTGAGTTGTAGATAAGACTGTTGAGGACCATCTCTGTGGTTTGTATCATTTGCAGGGATGGACTGAGTTCACATTGTGCAAGATGCTTCGGATTTTGGAAGGATCATGTTTAAAAAGCTATAGAGGCTTATGCCTTGAGGCTCGCCTCAAGGCAAGGCTCTAAGTTTTAGCCTCGAGGTTTACGCCTTTATTGAACCATAAGAGGCTTATGCCTCTCACAAAGGAAGCTTGCGCCTTTGTGAAAATGCATTGAGGCTTAAAATCTCTATGCCTCACCTAGTGATTAGAAAAATTATATTAATTGCCTAATTCTTAAAAAATATTAAGGTTTGAGTTGTGATAATTCAAACTAGGACTATTTTTTTGTTGTGACCTTAAGAACGCTGAAGGCAAACAGTTATGGTATAAATCAATCCTATTAATGATAATAGTAGCAGTAGTGATGAAGAAGATGCCCTTTTAGAATTTTTTATTAAGTGAAAATAAGTTTCTTTTTACACTTTTATATGACTATGATGTTTAGTAGTACTTGGCCATACCAATTTAGGTTTTGTAAAATATTTTTAATTCACTATTTGAGGTATACGCCTCATCCCGCCTTGCGGCTTACACCTTGCCTCTTGAAGAGAAAAAGCCTTGAGACCTCCTTTAGCCTTTTAAAACATTGGAAAGGATGATCATGTTAAGCATCCTTACATTATTGCTGTGTTAGATTTCTATTTAATCCAAATCTAGAATGTATGAAGATGATTAGACAAATTAAAAGAATATGAAATACTCTTCTACTCTTCTGGGAGAAAAAATGTGGTCCTGTAGAACCGTGTTTTATGATAGAATTCTATCGAATGTATCTTTTGCAACTTCATTCTACATCATTGTGTCCTGAACTAAGATGTCTTCTTGACTCAGGATATCCTCTTTTTAATAAGTAAATTAATCTCTCTCTCTCATACACATCTATGAAATATTCTTGTTTCTTGACTCTGAATCTTTTTGGTACTTTGCCAGGATGGAAGGCAATCTATTATGGGCATTCAACATTGAAGGCAGTGCTTTCCTCTGGCATCAGGTCCGCTGCATGGTTGCTGTAGTATTCATGGTTGGGCAAGGTCTTGAAGATCCTGATGTGTGTGCCAGACGTCTTTACATCTGATTGCTTTATTATATTTGCTTAAATAAGTTGCTTTTTTAGTATGTTAAACTGCTTGCGTTTGCTCATGGAAAAACAGCCATCTTATACCTCATAGGCCTAAATACTCTGACTTCAGTTTATTATATCTATCTGGAACGGCCATAAAAGATAAATAAATAATAGTAAATTTGGTGACTAGGAGCTAGTGTTTTTCAGAATCGACAGCCAAATTTAACTTTATATAGATGCATCTGCCGTTGACAAGGATACCTAGCCACTGTTTCTGTGCAATACATTGGTCACACAATTAGCACTCATTTCAAGATGGCAACATTGAAAGCCGCTGTATTATCACTATTATGGTTTCCTGATTATCAACTTCACTTGGCCCATGGTGTGAATTTGTTATGTTATGTGGAGTATAAAATGCATCTTAATCTAATAGATGAAGAGGACTGGTAAATTTTGTAGGTCGTAGATATTCTACTGGATCCATTAAGAACACCAAGGAAGCCTCAATACGTTATGGCTTCAGAAAGTCCTCTGGTTCTTCATTCTTGTGAATTTGAAGGTGTCAAATTTAGGTGTTCGTCAGGTACTTATTACAATTGATTATAGATAATGTGACTTCTACCGGGGGTATACTCTTTTTCACCTTATTTGTTGTTATATTATTGTTCTATACCTAAAGGATTTCCCTGCCTGCATTGCTTCTAGATGCTGGAGAAGCTCTTCAGTTGCATTTATCGAATGAAATCCGGACATATCAGCTCCAAGCTGCAATATTCAAAGAAGCTCTTCTGAGCTGTTTGCCAATCACAAATGGTCTGAATTGTAATCTTTCCCTACTATAAATTAGTTTTTTCTTTTTCAATTGATTCATGATACTAATGCGACCACTTCTATCTCCCCTCTAGATGGGAGCTCTTCAGACAAAAGAAAGTTAAAGAAGAAAAATTGCCATGTTGCCCTATTGTCAAGGCCAACTGAGCGTAAGTTATTCACTAAAATACTGTTTACTATTGTGATTAATTATTTGGTAATGTCATATAGTACTGCATTATCTGTACTAAACAATTGAATATATTGTTTGTATCACAGTTAAAAAGAAAAACACTTGAGTTAGACGCAAATCTAATAACCCTGCACATATCAGTTAATAATTTTGTTTGGCATATCCATTTAGTAGGAAAGCACACTCTATCCTTGTCTTTGCCCTGAAATTTTGGAAATTGGTGTCCAATTGACATTGATTCTGAAAGTTACAATTTCTTAAACAACAAATTTCGTTAGAAATAAATAAATTATGAGCAGTTTGGTCCCTAACCATTAACATAATTCTTTAGTTAATGTGGAGCTTTTGGTTTCCCTAAATAACAGTTAATTTAACAATTAGCTAAATTTATATTTTTGTTTGTGAACTCTTCAAGTATTATAGTTGTCTTGAGATGAGCAGAAATACGCTTAGGATGGTTTATACTTCATTTATTTTGCTTGCATTCCTTTGCCAACCAGAGGTGATTAATAACTCCCCACGCCCTTCAGTTACATCCGGATGCAACAGCAGGGTGTAAGGTATTTCCCTTACAAGTTACAATCTATTGATATGAGATGAAAAAAAATGCTCTAAAAGCCAATACAAACACTTTTCAGCCTATACGAGAGGGTTGATAAACTCTCCCTCCTCTATCAGCTTACTGAAAGATACAAAAAAGTATGAAAGTCCACTCCCTAATTCCTTAACAAATATATAGCCCTTCTTCCTCCGTTCCCAAACATTCTCTGTGCTCAGTCTCACCTGATCTCCCCAACGCCCCTCAAGGCCGACCTCAAATTGTTCCTTCCACGATCCTAACTCACTAACTAAAGGTACATCATCCTTCTTACTTACCTCTTCTTCTATATTGAAGAGTGTCGAATTACCGATTGACCTAAAAGTTTAAGCTGATGGGTGAAGGTAAACTTAATATTATATCAATACTGTGCCACTCCTCTTCACTTGTGGGCTTCGAAATTTGTAGAAAACCCAACAAATGGAAATCAATATTAATTGTAGGAACTTGAACACATATCTTCCTGGATGCCATTTTAGTTAAGTTGGAATATTATTGAATAATTTCTTACTTTCTTGCTTTACAATAATACAATGGTCAATCTTAAATAGAAGAGAGACCTAGAACTAAACAAGAAAAATATCCTATCCAAATAAATACAACATAATTGTAGCAAATAATTAAGGCATAAATTAACAATATTTTTGGCCTAAGTCAACAAAGAGTAATCAGGGGCCTAACACAGGGTTGCTTAAATTTTTTAGGAAAAGGGGGAGGATTCTAAAGGTGACTTGGCTACTTCGATGGATTTAGAATTTTTAGGACATTTATTCATAGATTTTGAAAGCAATCTTCTAGACAATTGACTTGTCTTTGGAATTCCCTTAATCATGTGGCTGACTTTTCTGATAGAATAGAAATATGAATCTGTAGTCGAGAATTTTTACAACCTTACTTGAACATGATCTGTTCTATAGGTTGATGTAGTCGAGAATTTTTGGAATGTTGAAATTGTACTAGAACGAACACTCTTTCTTCGCTGATGATTTATGGTCATGCAAGTTTAGCTGCCGGGGAGGAAGATGCTAATCAAAAACTTCAAATATTAGCTACATGATTGGGTTTTCATCTCAAAGAGGCATTAGCCTTTATTTATTTGATCTGTTAAATCCTTGTATCTTAAGTGTTGCCTTTTCTCTTCCTCATCCTCTTAACGATATTGTTAACTGCCATTTTTGTTCTTACTGTTTCTAAAAGCATACCATTCCCTCTGTTCTTATTTCAATATGTCAGTGTCTTTATTGGTATACGCTGTTACCTTTCCTTATAAATCTTACGAGTAGTTTCACTTATCCCAGCTTCTTATGAAGAGCGGCGAGCCAAGCTTGACTCAGCATCAACGAGTTGATCAAATACATCTTCATAGGCCAGTTGGTCAAATACATCTTCATAGGCGCAGGTAACGTAGTTTCCCATTGCATGTTATATTCACTTCATGGTCAGGAAGATCTTTATGTCTCGAACATGGTATCTAGTTTCCCATTTTTGTGTTTTTGTGGAAAAAAAAAAAAAAACACAAAAAGTTGTCAAGTGAACATGAAACTAGTTATCATATTGATATGGATAGAAATAAATCTAAGGGTATCTCTTATTCCATTTTATAAGAGAGTGGAAGTATTTTAAAAGTAGATTTGGCCCAACTTTTAGAACACTAATAATTAAGGGCACTTCTCAAGTTTTTAGGTTCAAAAAAGTGGTTTAAACCACTTCATTTCCTAAAAAATGTAGGTAGCAAAAAGTATTGACAATGGTGATCTTTAACTCCCCTTAGTAAGCAAATTACATTAATTTAATTTGGGCCGTTTGGTAACAATTTCATTTTTGGTCCTCTGCTACTTATTTTCTATTCCATTTTTTATAGTAGATCTCACATTTCTCAAAGAATTATTTGAATTCATAGTCAAATTTCGAAAACAGAATAGAACTGTAAATGCAATCAATTTGACAATCATTTTGGCCCCGTTAACTGTTTATTCTTTGTTTTAAGTTTTTAAAAATTAAGTTTATAGATCTTATTTCTATCAATTACTTTCTTTGTTTTGGTATCTACCTTTTAAGGATCTTTTAAACAACCAAGTCAAGTTTTGAAAATTAAAAAGTAATTTTTTCTTCAACTTGATTTGTTTTTTAACATTGGTAAAAAGTGAATAACTAGACAAAGAAAATTAATTATAAATGATAGATATGTTTGTAGGCTTAATTTTTATGAAGTTGGAAATGGCTATCAAATTTGATCAGTTAAAAATTAAATGAGTTGGAGTAACTTTAAATAATAATGACTGTGTCTGTAGTCATGCAGAGTTTGAACACTCAAAACATTAAAAGAGCAGAAGCAGAAATGATGAGTATCTGGCGATGAAGGGAAGAGGTGTTTAAAGAAAAAGGTGGCAGGCCAACCAGACCCCAACATCAACATGTAGCATCATCATGAAGCCGGGTGCATGAACTCAGACCAAATCATTTTTCTCACTAGCTCTGTCCCCCTTTCCTTCCAATTATTTTTCACATTTTTATGGTCTTATTATGTTGACAATGACTATTGATGGTTCTGCTGTATGTTTCTTAATGTTCTAAACTATGTAAAAGTTTTACTTGTT

mRNA sequence

GGGGCACGAATGAAAATTGGCTAAATAAAAAGAAACTTGACATTCTACTGATGTGAACACGCCACGGAATCACCGATTCCACCTGCGAATGGACCGAAAGTGAAAGTGGATCTCGTTTCTTCCTCTCATTTCTCGATCCTTCGTCTCGCTTCTCTGCATCTCTCGTCTTCGATTCTAATTTGACTCGCGATCAATTCCGAATGTCCTTTGAACTTTGGGGACTTACCTCTTTTGCAGTGGCCGTCTGAACTTTGGGGCTCTATTTCTCGACGTACAAGGGCTAATGGACGGAGCGGAACATTCTCTTGATCACAGAGAAACTACCGGAGCAATCGGGACGACCTCAGGAGCTAACGAGTTTCAACCATTCGATGGAAACCAAATTGCGAGTCTTCAATCCCAGCTTCTTCTTCTCCAAGGCAGGGTTAAGGAATTGGAGGAGGAAAATTCGAAGCTATCCTCTCGACTTGCTACTTGCCGCTGTTCCGAGAGGAGGATGAACTCTGACGACGGGAGTAGATCGATTGAGAAAAGCAAGGAATCTGGCACCACTAAGAAGAAAGCAATTACAGTCCTTCAGTACCTTCTCCTGAAGTTCTACGGTTTTGCTTCAGAGGCACAAATGGAACCAACAGTTGAATCTGAAATTTTCAGAGCTCTTGAGAAAGCCAGGCTTCTTGTTGGTGGTAGGAAGGAGTCTTGTTATTCAAGATGTGGGAGAACGGACAGGGGAGTCTCATCTGTTGGACAAGTAATTTCTCTCTATTTGCGGTCAAACCTTAAGGATCCCCCTGATGGTGCAAATAGTAATCATAATGAGGAGCAACATGATGGAGAAATTGATTATGTGAGAGTAATTAATAGAGTCCTTCCTAATGACATTCGGGTTTTAGGCTGGTGTACTGTTCCTATTGGCTTCAGTGCAAGATACTCTATTCAACATGTATGCTTGTATTGTCGGAACAATGTTAATGCTTACTCTGGCATTTCTTGTTGCCTCTATATGCAGCACAGAAATAATTTGGATATGCATTTTCACCAGGCTATGGAGAGGGCCGGTAAGAAGTTTGTAGGGGAACACGACTTTAGAAACTTCTGCAAAATGGATGCTGCAAATGTTCATAATTATAGGCGATGCATCATGTCGTTTGACATTTCTCCTTGTGATGTGAGGTTGGTGTTGGTATCAGATCTTCTCATCTGCTTTCCAATTGAAATTTCTGTACAGTGCTTAATCGACATGATGGAAGGCAATCTATTATGGGCATTCAACATTGAAGGCAGTGCTTTCCTCTGGCATCAGGTCCGCTGCATGGTTGCTGTAGTATTCATGGTTGGGCAAGGTCTTGAAGATCCTGATGTCGTAGATATTCTACTGGATCCATTAAGAACACCAAGGAAGCCTCAATACGTTATGGCTTCAGAAAGTCCTCTGGTTCTTCATTCTTGTGAATTTGAAGGTGTCAAATTTAGGTGTTCGTCAGATGCTGGAGAAGCTCTTCAGTTGCATTTATCGAATGAAATCCGGACATATCAGCTCCAAGCTGCAATATTCAAAGAAGCTCTTCTGAGCTGTTTGCCAATCACAAATGATGGGAGCTCTTCAGACAAAAGAAAGTTAAAGAAGAAAAATTGCCATGTTGCCCTATTGTCAAGGCCAACTGAGCGTAAGTTATTCACTAAAATACTGTTTACTATTTTAAAAAGAAAAACACTTGAGTTAGACGCAAATCTAATAACCCTGCACATATCACTTCTTATGAAGAGCGGCGAGCCAAGCTTGACTCAGCATCAACGAGTTGATCAAATACATCTTCATAGGCCAGTTGGTCAAATACATCTTCATAGGCGCAGTCATGCAGAGTTTGAACACTCAAAACATTAAAAGAGCAGAAGCAGAAATGATGAGTATCTGGCGATGAAGGGAAGAGGTGTTTAAAGAAAAAGGTGGCAGGCCAACCAGACCCCAACATCAACATGTAGCATCATCATGAAGCCGGGTGCATGAACTCAGACCAAATCATTTTTCTCACTAGCTCTGTCCCCCTTTCCTTCCAATTATTTTTCACATTTTTATGGTCTTATTATGTTGACAATGACTATTGATGGTTCTGCTGTATGTTTCTTAATGTTCTAAACTATGTAAAAGTTTTACTTGTT

Coding sequence (CDS)

ATGGACGGAGCGGAACATTCTCTTGATCACAGAGAAACTACCGGAGCAATCGGGACGACCTCAGGAGCTAACGAGTTTCAACCATTCGATGGAAACCAAATTGCGAGTCTTCAATCCCAGCTTCTTCTTCTCCAAGGCAGGGTTAAGGAATTGGAGGAGGAAAATTCGAAGCTATCCTCTCGACTTGCTACTTGCCGCTGTTCCGAGAGGAGGATGAACTCTGACGACGGGAGTAGATCGATTGAGAAAAGCAAGGAATCTGGCACCACTAAGAAGAAAGCAATTACAGTCCTTCAGTACCTTCTCCTGAAGTTCTACGGTTTTGCTTCAGAGGCACAAATGGAACCAACAGTTGAATCTGAAATTTTCAGAGCTCTTGAGAAAGCCAGGCTTCTTGTTGGTGGTAGGAAGGAGTCTTGTTATTCAAGATGTGGGAGAACGGACAGGGGAGTCTCATCTGTTGGACAAGTAATTTCTCTCTATTTGCGGTCAAACCTTAAGGATCCCCCTGATGGTGCAAATAGTAATCATAATGAGGAGCAACATGATGGAGAAATTGATTATGTGAGAGTAATTAATAGAGTCCTTCCTAATGACATTCGGGTTTTAGGCTGGTGTACTGTTCCTATTGGCTTCAGTGCAAGATACTCTATTCAACATGTATGCTTGTATTGTCGGAACAATGTTAATGCTTACTCTGGCATTTCTTGTTGCCTCTATATGCAGCACAGAAATAATTTGGATATGCATTTTCACCAGGCTATGGAGAGGGCCGGTAAGAAGTTTGTAGGGGAACACGACTTTAGAAACTTCTGCAAAATGGATGCTGCAAATGTTCATAATTATAGGCGATGCATCATGTCGTTTGACATTTCTCCTTGTGATGTGAGGTTGGTGTTGGTATCAGATCTTCTCATCTGCTTTCCAATTGAAATTTCTGTACAGTGCTTAATCGACATGATGGAAGGCAATCTATTATGGGCATTCAACATTGAAGGCAGTGCTTTCCTCTGGCATCAGGTCCGCTGCATGGTTGCTGTAGTATTCATGGTTGGGCAAGGTCTTGAAGATCCTGATGTCGTAGATATTCTACTGGATCCATTAAGAACACCAAGGAAGCCTCAATACGTTATGGCTTCAGAAAGTCCTCTGGTTCTTCATTCTTGTGAATTTGAAGGTGTCAAATTTAGGTGTTCGTCAGATGCTGGAGAAGCTCTTCAGTTGCATTTATCGAATGAAATCCGGACATATCAGCTCCAAGCTGCAATATTCAAAGAAGCTCTTCTGAGCTGTTTGCCAATCACAAATGATGGGAGCTCTTCAGACAAAAGAAAGTTAAAGAAGAAAAATTGCCATGTTGCCCTATTGTCAAGGCCAACTGAGCGTAAGTTATTCACTAAAATACTGTTTACTATTTTAAAAAGAAAAACACTTGAGTTAGACGCAAATCTAATAACCCTGCACATATCACTTCTTATGAAGAGCGGCGAGCCAAGCTTGACTCAGCATCAACGAGTTGATCAAATACATCTTCATAGGCCAGTTGGTCAAATACATCTTCATAGGCGCAGTCATGCAGAGTTTGAACACTCAAAACATTAA

Protein sequence

MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSSRLATCRCSERRMNSDDGSRSIEKSKESGTTKKKAITVLQYLLLKFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVGQVISLYLRSNLKDPPDGANSNHNEEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSARYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKMDAANVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGSAFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGVKFRCSSDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVALLSRPTERKLFTKILFTILKRKTLELDANLITLHISLLMKSGEPSLTQHQRVDQIHLHRPVGQIHLHRRSHAEFEHSKH

Homology

[Close]

BLAST of ClCG08G007160 vs. NCBI nr
Match: XP_038884605.1 (tRNA pseudouridine(38/39) synthase isoform X2 [Benincasa hispida])

HSP 1 Score: 690.6 bits (1781), Expect = 1.0e-194
Identity = 373/482 (77.39%), Postives = 391/482 (81.12%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAEHSLD+RE+T AIG TSGANEFQPF+GNQIASLQSQL LLQGRVKELEEENSKLSS
Sbjct: 1   MDGAEHSLDYRESTEAIGMTSGANEFQPFNGNQIASLQSQLRLLQGRVKELEEENSKLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESGTTKKKAITVL-------------QYLLLK--- 120
           R A+CRCSERRMN DDGS SI KSKES TTKKKA+                +Y+ LK   
Sbjct: 61  RFASCRCSERRMNFDDGSSSIGKSKESSTTKKKAVKKTAGYNTRILDHCSKRYIALKVMY 120

Query: 121 ----FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVGQVISL 180
               FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTD+GVSSVGQVI+L
Sbjct: 121 FGQRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDKGVSSVGQVIAL 180

Query: 181 YLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSARYSIQ 240
           YLRSNLKDPP+G NS HN EEQHDGEIDYVRVINR LPNDIRVLGWCTVP+GFSAR+S  
Sbjct: 181 YLRSNLKDPPNGENSYHNGEEQHDGEIDYVRVINRALPNDIRVLGWCTVPVGFSARFS-- 240

Query: 241 HVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKMDAANV 300
             CL  +             Y     NL++    AMERAGKKFVGEHDFRNFCKMDAANV
Sbjct: 241 --CLRRKYK-----------YFFWGANLNI---SAMERAGKKFVGEHDFRNFCKMDAANV 300

Query: 301 HNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGSAFLWH 360
           HNYRR IMSFDISPCDVR                       MEGNLLWAFNIEGSAFLWH
Sbjct: 301 HNYRRRIMSFDISPCDVR-----------------------MEGNLLWAFNIEGSAFLWH 360

Query: 361 QVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGVKFRCS 420
           QVRCMVAVVFMVGQGLEDPDVVDILL+PLRTPRKPQYVMASE+PLVLHSCEFE VKFRCS
Sbjct: 361 QVRCMVAVVFMVGQGLEDPDVVDILLNPLRTPRKPQYVMASENPLVLHSCEFEHVKFRCS 420

Query: 421 SDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVALLSRP 462
           SDAGEALQLHL NEIRTY+LQAAIFKEALLSCLPITNDGSSSD RKLKKKNCHVALLSRP
Sbjct: 421 SDAGEALQLHLWNEIRTYELQAAIFKEALLSCLPITNDGSSSDIRKLKKKNCHVALLSRP 441

[Close]

BLAST of ClCG08G007160 vs. NCBI nr
Match: TYK04459.1 (tRNA pseudouridine(38/39) synthase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 686.4 bits (1770), Expect = 1.9e-193
Identity = 380/534 (71.16%), Postives = 396/534 (74.16%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAE   D  ETTGAI  T  ANEFQPFDGNQIASLQSQL LLQ RVKELEEENSKLSS
Sbjct: 1   MDGAELFTDITETTGAIRKTLEANEFQPFDGNQIASLQSQLRLLQDRVKELEEENSKLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESGTTKKKAI-------------TVLQYLLLK--- 120
            LA+C CSERRMN  D S SIEKS ESGTTKKK++                +Y+ LK   
Sbjct: 61  PLASCCCSERRMNFGDRSCSIEKSTESGTTKKKSVERTTGYNTRILDHCSKRYIALKVMY 120

Query: 121 ----FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVGQVISL 180
               FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTD+GVSSVGQVI+L
Sbjct: 121 FGQRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDKGVSSVGQVIAL 180

Query: 181 YLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSARYSIQ 240
           YLRSNLKDPP+  NS HN EEQHDGEIDYVRVIN+VLPNDIRVLGWC VP+GFSA     
Sbjct: 181 YLRSNLKDPPNAENSCHNAEEQHDGEIDYVRVINKVLPNDIRVLGWCPVPVGFSA----- 240

Query: 241 HVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKMDAANV 300
                                   RNNLD+HFHQAMERAGKKFVGEHDFRNFCKMDAANV
Sbjct: 241 ------------------------RNNLDLHFHQAMERAGKKFVGEHDFRNFCKMDAANV 300

Query: 301 HNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLID-------------------- 360
           HNYRRCIMSFDISPCDVRLV VSDLL+ FPI + V CLID                    
Sbjct: 301 HNYRRCIMSFDISPCDVRLVFVSDLLVFFPIGLPVPCLIDTCLAFAHFYSRICFAYVLQA 360

Query: 361 -------------------------------MMEGNLLWAFNIEGSAFLWHQVRCMVAVV 420
                                            EGNLLWAFNIEGSAFLWHQVRCMVAVV
Sbjct: 361 IQTSFPLAIVKLMLLYSPIFGLSSLLAMFSPRTEGNLLWAFNIEGSAFLWHQVRCMVAVV 420

Query: 421 FMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGVKFRCSSDAGEALQL 463
           FMVGQGLEDPDVVDILLDPLRTPRKPQYVMASE+PLVLHSCEFEGVKFRCSSDAGEALQL
Sbjct: 421 FMVGQGLEDPDVVDILLDPLRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQL 480

[Close]

BLAST of ClCG08G007160 vs. NCBI nr
Match: XP_038884603.1 (tRNA pseudouridine(38/39) synthase isoform X1 [Benincasa hispida] >XP_038884604.1 tRNA pseudouridine(38/39) synthase isoform X1 [Benincasa hispida])

HSP 1 Score: 682.6 bits (1760), Expect = 2.8e-192
Identity = 372/485 (76.70%), Postives = 390/485 (80.41%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAEHSLD+RE+T AIG TSGANEFQPF+GNQIASLQSQL LLQGRVKELEEENSKLSS
Sbjct: 1   MDGAEHSLDYRESTEAIGMTSGANEFQPFNGNQIASLQSQLRLLQGRVKELEEENSKLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESGTTKKKAITVL-------------QYLLLK--- 120
           R A+CRCSERRMN DDGS SI KSKES TTKKKA+                +Y+ LK   
Sbjct: 61  RFASCRCSERRMNFDDGSSSIGKSKESSTTKKKAVKKTAGYNTRILDHCSKRYIALKVMY 120

Query: 121 ----FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVGQVISL 180
               FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTD+GVSSVGQVI+L
Sbjct: 121 FGQRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDKGVSSVGQVIAL 180

Query: 181 YLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSARYSIQ 240
           YLRSNLKDPP+G NS HN EEQHDGEIDYVRVINR LPNDIRVLGWCTVP+GFSAR+S  
Sbjct: 181 YLRSNLKDPPNGENSYHNGEEQHDGEIDYVRVINRALPNDIRVLGWCTVPVGFSARFS-- 240

Query: 241 HVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKMDAANV 300
             CL  +             Y     NL++    AMERAGKKFVGEHDFRNFCKMDAANV
Sbjct: 241 --CLRRKYK-----------YFFWGANLNI---SAMERAGKKFVGEHDFRNFCKMDAANV 300

Query: 301 HNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGSAFLWH 360
           HNYRR IMSFDISPCDVR                       MEGNLLWAFNIEGSAFLWH
Sbjct: 301 HNYRRRIMSFDISPCDVR-----------------------MEGNLLWAFNIEGSAFLWH 360

Query: 361 QVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGVKFRCS 420
           QVRCMVAVVFMVGQGLEDPDVVDILL+PLRTPRKPQYVMASE+PLVLHSCEFE VKFRCS
Sbjct: 361 QVRCMVAVVFMVGQGLEDPDVVDILLNPLRTPRKPQYVMASENPLVLHSCEFEHVKFRCS 420

Query: 421 SDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITND---GSSSDKRKLKKKNCHVALL 462
           SDAGEALQLHL NEIRTY+LQAAIFKEALLSCLPITN    GSSSD RKLKKKNCHVALL
Sbjct: 421 SDAGEALQLHLWNEIRTYELQAAIFKEALLSCLPITNGLNYGSSSDIRKLKKKNCHVALL 444

[Close]

BLAST of ClCG08G007160 vs. NCBI nr
Match: KAG6578858.1 (putative F-actin-capping protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 670.2 bits (1728), Expect = 1.4e-188
Identity = 362/487 (74.33%), Postives = 386/487 (79.26%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAEHSLD+R  TGA+ TTSG +EFQPFDGN I +LQSQL LLQGRVKELEEENS LSS
Sbjct: 20  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 79

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESG-----TTKKKAITVL-------------QYLL 120
           RLA+C CSERRMN DDGS SIEKSK+ G     TTKKKA+                +Y+ 
Sbjct: 80  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPGYNTRILDHCSKRYIA 139

Query: 121 LK-------FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG 180
           LK       FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG
Sbjct: 140 LKVMYFGRRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG 199

Query: 181 QVISLYLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSA 240
           QVI+LYLRSNLKDPP+G N NHN EE HDGEIDYVRV+NRVLPNDIRVLGWCTVP+GFSA
Sbjct: 200 QVIALYLRSNLKDPPNGENGNHNSEEHHDGEIDYVRVMNRVLPNDIRVLGWCTVPVGFSA 259

Query: 241 RYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKM 300
           R+S    CL  +             Y+    NL++    AMERAGKKFVGEHDFRNFCKM
Sbjct: 260 RFS----CLRRKYK-----------YLFWGANLNI---SAMERAGKKFVGEHDFRNFCKM 319

Query: 301 DAANVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGS 360
           DAANVHNYRRCIMSFDISPCDVR                       MEGN LWAFNIEGS
Sbjct: 320 DAANVHNYRRCIMSFDISPCDVR-----------------------MEGNPLWAFNIEGS 379

Query: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGV 420
           AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDP+RTPRKPQYVMASE+PLVLHSCEFEGV
Sbjct: 380 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPVRTPRKPQYVMASENPLVLHSCEFEGV 439

Query: 421 KFRCSSDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVA 462
           KFRCS+DAGEALQLHL+NEIRTY+LQAAIFKEALLSCLPITND S SD RK+KKK CHV 
Sbjct: 440 KFRCSTDAGEALQLHLTNEIRTYELQAAIFKEALLSCLPITNDESFSDNRKIKKKICHVP 465

[Close]

BLAST of ClCG08G007160 vs. NCBI nr
Match: XP_023551060.1 (tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551061.1 tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 669.8 bits (1727), Expect = 1.9e-188
Identity = 361/487 (74.13%), Postives = 385/487 (79.06%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAEHSLD+R  TGA+ TTSG +EFQPFDGN I +LQSQL LLQGRVKELEEENS LS+
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLST 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESG-----TTKKKAITVL-------------QYLL 120
           RLATC CSERRMN DDGS SIEKSK+ G     TTKKKA+                +Y+ 
Sbjct: 61  RLATCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPGYNTRILDHCSKRYIA 120

Query: 121 LK-------FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG 180
           LK       FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG
Sbjct: 121 LKVMYFGRRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG 180

Query: 181 QVISLYLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSA 240
           QVI+LYLRSNLKDPP+G N NHN EE HDGEIDYVRV+NRVLPNDIRVLGWCTVP+GFSA
Sbjct: 181 QVIALYLRSNLKDPPNGENGNHNSEEHHDGEIDYVRVMNRVLPNDIRVLGWCTVPVGFSA 240

Query: 241 RYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKM 300
           R+S    CL  +             Y+    NL++    AMERAGKKFVGEHDFRNFCKM
Sbjct: 241 RFS----CLRRKYK-----------YLFWGANLNI---SAMERAGKKFVGEHDFRNFCKM 300

Query: 301 DAANVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGS 360
           DAANVHNYRRCIMSFDISPCDVR                       MEGNLLWAFNIEGS
Sbjct: 301 DAANVHNYRRCIMSFDISPCDVR-----------------------MEGNLLWAFNIEGS 360

Query: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGV 420
           AFLWHQVRCMVAVV+MVGQGLEDPDVVDILLDPLRTPRKPQYVMASE+PLVLHSCEFEGV
Sbjct: 361 AFLWHQVRCMVAVVYMVGQGLEDPDVVDILLDPLRTPRKPQYVMASENPLVLHSCEFEGV 420

Query: 421 KFRCSSDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVA 462
           KFRCS+DAGEALQLHL+NEIRTY+LQAAIFKEALLSCLPITND S  D RK+KKK CHV 
Sbjct: 421 KFRCSTDAGEALQLHLTNEIRTYELQAAIFKEALLSCLPITNDESFPDNRKIKKKICHVP 446

[Close]

BLAST of ClCG08G007160 vs. ExPASy Swiss-Prot
Match: Q3SX07 (tRNA pseudouridine(38/39) synthase OS=Bos taurus OX=9913 GN=PUS3 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.6e-55
Identity = 150/383 (39.16%), Postives = 206/383 (53.79%), Query Frame = 0


Query: 32  NQIASLQSQLLLLQGRVKELEEENSKLSSRLATCRCSERRMNSDDGSRSIEKSKESGTTK 91
           N +  +Q++ LL   RV+ELE+E  +L    A  + S  R NS       +++ +     
Sbjct: 4   NDVDRIQTEKLL--KRVQELEQEVKRLKKEQANNKDSNIRENSSGAGGKPKRAFDFSAHG 63

Query: 92  KKAITV-LQYLLLKFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRG 151
           ++ + + + YL   + GFAS+     T+E ++F AL K R LV  R+ S Y RCGRTD+G
Sbjct: 64  QRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVENRQTSNYHRCGRTDKG 123

Query: 152 VSSVGQVISLYLRSNLKDPPDGANSNHNEEQHD--GEIDYVRVINRVLPNDIRVLGWCTV 211
           VS+ GQVISL LRS++    D  + N   E +D   EI Y  ++NRVLP DIRVL W  V
Sbjct: 124 VSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPV 183

Query: 212 PIGFSARYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDF 271
              FSAR+S    CL        Y       Y   R NLD+     M  A +K+VG HDF
Sbjct: 184 ETSFSARFS----CL-----ERTYR------YFFPRANLDI---VTMNYAAQKYVGTHDF 243

Query: 272 RNFCKMDAAN-VHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLW 331
           RN CKMD AN V N++R I+S  +      L                       E   L 
Sbjct: 244 RNLCKMDVANGVINFQRTILSAQVQRVGQNLGEEG-----------------WQEPFQLC 303

Query: 332 AFNIEGSAFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLH 391
            F + G AFL+HQVRCM+AV+F++GQG+E P+V+D LL+  + P+KPQY MA E PLVL+
Sbjct: 304 QFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLY 348

Query: 392 SCEFEGVKFRCSSDAGEALQLHL 411
            C+FE +K+    +  E    HL
Sbjct: 364 DCKFENIKWIYDREVQEFNVTHL 348

[Close]

BLAST of ClCG08G007160 vs. ExPASy Swiss-Prot
Match: Q9JI38 (tRNA pseudouridine(38/39) synthase OS=Mus musculus OX=10090 GN=Pus3 PE=1 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 3.7e-54
Identity = 157/423 (37.12%), Postives = 222/423 (52.48%), Query Frame = 0


Query: 38  QSQLLLLQGRVKELEEENSKLSSR---LATCRCSERRMNSDDGSRSIEKSKESGTTKKKA 97
           ++Q+  L  RVKELE+E  +L  +       + S  R NS    ++      S   ++  
Sbjct: 7   RNQIEKLLNRVKELEQEVERLKKKKEQANNIKDSSIRENSLGSGKAKRAFDFSAHGRRHV 66

Query: 98  ITVLQYLLLKFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSV 157
              + YL   + GFAS+     T+E ++F AL K R LV  R+ S Y RCGRTD+GVS+ 
Sbjct: 67  ALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAF 126

Query: 158 GQVISLYLRSNLKDPPDGANSNHNEEQHD--GEIDYVRVINRVLPNDIRVLGWCTVPIGF 217
           GQVISL LRS      D  +SN   E  D   EI Y  ++NRVLP DIRVL W  V   F
Sbjct: 127 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSF 186

Query: 218 SARYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFC 277
           SAR+S    CL        Y       Y   R +LD+     M  A +K+VG HDFRN C
Sbjct: 187 SARFS----CL-----ERTYR------YFFPRADLDI---ATMNYAAQKYVGTHDFRNLC 246

Query: 278 KMDAAN-VHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNI 337
           KMD AN V N++R I+        V+LV  S      P E   Q      E   L  F +
Sbjct: 247 KMDVANGVINFQRTILC-----AQVQLVAQS------PGEERRQ------EPFQLCQFEV 306

Query: 338 EGSAFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEF 397
            G AFL+HQVRCM+A++F++GQG+E P+++D LL+  + P+KPQY MA E PLVL+ C+F
Sbjct: 307 IGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKF 366

Query: 398 EGVKFRCSSDAGEALQLHL-----SNEIRTYQLQAAI--FKEALLSCLPITNDGSSSDKR 448
           E  K+    +  E    HL     ++ ++T+ L + +      +++C   T    +++ R
Sbjct: 367 ENTKWIYDHEVQEFNVTHLQQLWANHAVKTHMLYSMLQGLDSVMVTCAAGTKMDEATEWR 393

[Close]

BLAST of ClCG08G007160 vs. ExPASy Swiss-Prot
Match: Q9BZE2 (tRNA pseudouridine(38/39) synthase OS=Homo sapiens OX=9606 GN=PUS3 PE=1 SV=3)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-53
Identity = 154/395 (38.99%), Postives = 214/395 (54.18%), Query Frame = 0


Query: 38  QSQLLLLQGRVKELEEENSKLSSRLATCR-CSERRMNSDDGSRSIEKSKESGTTKKKAIT 97
           ++Q   L  RV+ELE+E  +L    A  +  S  R NS    ++      S   ++    
Sbjct: 8   RNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVAL 67

Query: 98  VLQYLLLKFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVGQ 157
            + Y+   + GFAS+     T+E ++F AL K R LV  R+ S Y RCGRTD+GVS+ GQ
Sbjct: 68  RIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAFGQ 127

Query: 158 VISLYLRSNLKDPPDGANSNHNEEQHDG--EIDYVRVINRVLPNDIRVLGWCTVPIGFSA 217
           VISL LRS      D  + N  EE +    EI Y  ++NRVLP DIR+L W  V   FSA
Sbjct: 128 VISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSA 187

Query: 218 RYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKM 277
           R+S    CL        Y       Y   R +LD+     M+ A +K+VG HDFRN CKM
Sbjct: 188 RFS----CL-----ERTYR------YFFPRADLDI---VTMDYAAQKYVGTHDFRNLCKM 247

Query: 278 DAAN-VHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEG 337
           D AN V N++R I+S       V+LV  S      P E   Q      E   L  F + G
Sbjct: 248 DVANGVINFQRTILS-----AQVQLVGQS------PGEGRWQ------EPFQLCQFEVTG 307

Query: 338 SAFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEG 397
            AFL+HQVRCM+A++F++GQG+E P+++D LL+  + P+KPQY MA E PLVL+ C+FE 
Sbjct: 308 QAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFEN 366

Query: 398 VKFRCSSDAGE-----ALQLHLSNEIRTYQLQAAI 424
           VK+    +A E       QL  ++ ++T+ L + +
Sbjct: 368 VKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSML 366

[Close]

BLAST of ClCG08G007160 vs. ExPASy Swiss-Prot
Match: P31115 (tRNA pseudouridine(38/39) synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DEG1 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.6e-43
Identity = 141/412 (34.22%), Postives = 208/412 (50.49%), Query Frame = 0


Query: 47  RVKELEEENSKLSSRLATCRCSERRMNSDDGSRSIEKSKESGTTKK--------KAITV- 106
           R+ ELE  N   S +      +++R  S +    + +SK     KK        + I + 
Sbjct: 41  RITELENANKPHSEKFQHIEDNKKRKISQE---EVTRSKAKKAPKKFDFSKHNTRFIALR 100

Query: 107 LQYLLLKFYGFASEAQME--PTVESEIFRALEKARLLVG-GRKESCYSRCGRTDRGVSSV 166
             YL   + G A + +    PTVE  I  A+ K +L+     ++  +SRCGRTD+GVS++
Sbjct: 101 FAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAM 160

Query: 167 GQVISLYLRSNLKDPPDGANSNHNEEQHDGEIDYVRVINRVLPNDIRVLGWC-TVPIGFS 226
            QVISL +RSNL D      +N +      EI YV V+N++LP+DIR+   C   P  F 
Sbjct: 161 NQVISLEVRSNLTDEEQRDPTNDSR-----EIPYVHVLNQLLPDDIRISAVCLRPPPNFD 220

Query: 227 ARYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCK 286
           AR+S  H           Y       Y+ +  NL++   + M +A   FVGE DFRNFCK
Sbjct: 221 ARFSCVH---------RHYK------YIFNGKNLNI---EKMSKAASYFVGERDFRNFCK 280

Query: 287 MDAA-NVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIE 346
           +D +  + N++R I+S  I P       +S+   C                     F++ 
Sbjct: 281 LDGSKQITNFKRTIISSKILP-------LSETFYC---------------------FDLV 340

Query: 347 GSAFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEF- 406
           GSAFLWHQVRCM+A++F+VGQ LE P++V  L D  +TP++P Y MA++ PL+L+ C+F 
Sbjct: 341 GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFP 388

Query: 407 ------------EGVKFRCSSDAGEALQLHLSNEIRTYQLQAA---IFKEAL 429
                       + +KF   + A EAL LH       Y+L+AA   IFK+ L
Sbjct: 401 EMDWQEPTVDDYKAIKF---TTATEALTLH-------YELKAAVCNIFKDVL 388

[Close]

BLAST of ClCG08G007160 vs. ExPASy Swiss-Prot
Match: Q9UTB3 (Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25B8.05 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.6e-43
Identity = 112/292 (38.36%), Postives = 165/292 (56.51%), Query Frame = 0


Query: 116 PTVESEIFRALEKARLLVGGRKESC-YSRCGRTDRGVSSVGQVISLYLRSNLKDPPDGAN 175
           PTVE ++F AL +A L+      SC +SRCGRTD+GVS++GQVISL +R + + P     
Sbjct: 118 PTVEGKVFEALLRAHLITD--PSSCSFSRCGRTDKGVSAMGQVISLNVRHSERRP----- 177

Query: 176 SNHNEEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSARYSIQ---HVCLYCRNNVNA 235
                      I Y  V+NR+LP DIR+ G+   P GF AR+S +   +  L+ ++    
Sbjct: 178 -----------IIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKYLFTKD---- 237

Query: 236 YSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKMDAA-NVHNYRRCIMSFD 295
           Y G           +LD+     M  A   ++GEHDFRNFCK+DA+  + NY R I+S  
Sbjct: 238 YPG----------GSLDI---DRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRILSSK 297

Query: 296 ISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGSAFLWHQVRCMVAVVFM 355
           +              IC          ID   G  L+AF+++G+AFLWHQVRCM+A++F+
Sbjct: 298 V--------------IC----------IDPSTG--LYAFDLQGTAFLWHQVRCMMAILFL 348

Query: 356 VGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGVKFRCSSDA 403
           +GQ LE   +++ LLD  + P KP Y MASE PL+L+ C+F+ +++   +D+
Sbjct: 358 IGQKLEPASLINDLLDIKKVPTKPIYDMASEYPLILYDCDFDNIEWTLPTDS 348

[Close]

BLAST of ClCG08G007160 vs. ExPASy TrEMBL
Match: A0A5D3C242 (tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00640 PE=3 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 9.4e-194
Identity = 380/534 (71.16%), Postives = 396/534 (74.16%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAE   D  ETTGAI  T  ANEFQPFDGNQIASLQSQL LLQ RVKELEEENSKLSS
Sbjct: 1   MDGAELFTDITETTGAIRKTLEANEFQPFDGNQIASLQSQLRLLQDRVKELEEENSKLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESGTTKKKAI-------------TVLQYLLLK--- 120
            LA+C CSERRMN  D S SIEKS ESGTTKKK++                +Y+ LK   
Sbjct: 61  PLASCCCSERRMNFGDRSCSIEKSTESGTTKKKSVERTTGYNTRILDHCSKRYIALKVMY 120

Query: 121 ----FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVGQVISL 180
               FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTD+GVSSVGQVI+L
Sbjct: 121 FGQRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDKGVSSVGQVIAL 180

Query: 181 YLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSARYSIQ 240
           YLRSNLKDPP+  NS HN EEQHDGEIDYVRVIN+VLPNDIRVLGWC VP+GFSA     
Sbjct: 181 YLRSNLKDPPNAENSCHNAEEQHDGEIDYVRVINKVLPNDIRVLGWCPVPVGFSA----- 240

Query: 241 HVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKMDAANV 300
                                   RNNLD+HFHQAMERAGKKFVGEHDFRNFCKMDAANV
Sbjct: 241 ------------------------RNNLDLHFHQAMERAGKKFVGEHDFRNFCKMDAANV 300

Query: 301 HNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLID-------------------- 360
           HNYRRCIMSFDISPCDVRLV VSDLL+ FPI + V CLID                    
Sbjct: 301 HNYRRCIMSFDISPCDVRLVFVSDLLVFFPIGLPVPCLIDTCLAFAHFYSRICFAYVLQA 360

Query: 361 -------------------------------MMEGNLLWAFNIEGSAFLWHQVRCMVAVV 420
                                            EGNLLWAFNIEGSAFLWHQVRCMVAVV
Sbjct: 361 IQTSFPLAIVKLMLLYSPIFGLSSLLAMFSPRTEGNLLWAFNIEGSAFLWHQVRCMVAVV 420

Query: 421 FMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGVKFRCSSDAGEALQL 463
           FMVGQGLEDPDVVDILLDPLRTPRKPQYVMASE+PLVLHSCEFEGVKFRCSSDAGEALQL
Sbjct: 421 FMVGQGLEDPDVVDILLDPLRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQL 480

[Close]

BLAST of ClCG08G007160 vs. ExPASy TrEMBL
Match: A0A6J1FEX0 (tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444871 PE=3 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 1.2e-188
Identity = 362/487 (74.33%), Postives = 386/487 (79.26%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAEHSLD+R  TGA+ TTSG +EFQPFDGN I +LQS+L LLQGRVK LEEENS LSS
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSRLRLLQGRVKVLEEENSNLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESG-----TTKKKAITVL-------------QYLL 120
           RLATC CSERRMN DDGS SIEKS++ G     TTKKKA+                +Y+ 
Sbjct: 61  RLATCCCSERRMNFDDGSSSIEKSRKYGSLKDKTTKKKAVEKTPGYNTRILDHCSKRYIA 120

Query: 121 LK-------FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG 180
           LK       FYGFASEAQMEPTVESEIFRAL+KARLLVGGRKESCYSRCGRTDRGVSSVG
Sbjct: 121 LKVMYFGRRFYGFASEAQMEPTVESEIFRALDKARLLVGGRKESCYSRCGRTDRGVSSVG 180

Query: 181 QVISLYLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSA 240
           QVI+LYLRSNLKDPP+G N NHN EE HDGEIDYVRVINRVLPNDIRVLGWCTVP+GFSA
Sbjct: 181 QVIALYLRSNLKDPPNGENGNHNAEEHHDGEIDYVRVINRVLPNDIRVLGWCTVPVGFSA 240

Query: 241 RYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKM 300
           R+S    CL  +             Y+    NL++    AMERAGKKFVGEHDFRNFCKM
Sbjct: 241 RFS----CLRRKYK-----------YLFWGANLNI---SAMERAGKKFVGEHDFRNFCKM 300

Query: 301 DAANVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGS 360
           DAANVHNYRRCIMSFDISPCDVR                       MEGNLLWAFNIEGS
Sbjct: 301 DAANVHNYRRCIMSFDISPCDVR-----------------------MEGNLLWAFNIEGS 360

Query: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGV 420
           AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASE+PLVLHSCEFEGV
Sbjct: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASENPLVLHSCEFEGV 420

Query: 421 KFRCSSDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVA 462
           KFRCS+DAGEALQLHLSNEIRTY+LQAAIFKEALLSCLPIT+D S SD RK+KKK CHV 
Sbjct: 421 KFRCSTDAGEALQLHLSNEIRTYELQAAIFKEALLSCLPITDDESLSDNRKIKKKICHVP 446

[Close]

BLAST of ClCG08G007160 vs. ExPASy TrEMBL
Match: A0A6J1JWD4 (tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488950 PE=3 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 4.5e-188
Identity = 360/487 (73.92%), Postives = 385/487 (79.06%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAEHSLDHR  TGA+ TTSG +EFQPFD N I +LQSQL LLQGRVKELEEENS LSS
Sbjct: 1   MDGAEHSLDHRGATGAMETTSGTDEFQPFDRNLIENLQSQLRLLQGRVKELEEENSNLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESG-----TTKKKAITVL-------------QYLL 120
           RLA+C CSERRMN DDGS SIEKSK+ G     TT+KKA+                +Y+ 
Sbjct: 61  RLASCYCSERRMNFDDGSSSIEKSKKYGSLKDKTTEKKAVEKTPGYNTRILDHCSKRYIA 120

Query: 121 LK-------FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG 180
           LK       FYGFASEAQMEPTVESEIFRAL+KARLLVGGRKESCYSRCGRTD+GVSSVG
Sbjct: 121 LKVMYFGRRFYGFASEAQMEPTVESEIFRALDKARLLVGGRKESCYSRCGRTDKGVSSVG 180

Query: 181 QVISLYLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSA 240
           QVI+LYLRSNLKDPP+G N NHN +E HDGEIDYVRVINRVLPNDIRVLGWCTVP+GFSA
Sbjct: 181 QVIALYLRSNLKDPPNGENGNHNSKEHHDGEIDYVRVINRVLPNDIRVLGWCTVPVGFSA 240

Query: 241 RYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKM 300
           R+S    CL  R             Y+    NL++    AME AGKKFVGEHDFRNFCKM
Sbjct: 241 RFS----CLRRRYK-----------YLFWGANLNI---SAMESAGKKFVGEHDFRNFCKM 300

Query: 301 DAANVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGS 360
           DAANVHNYRRCIMSFDISPCDVR                       MEGNLLWAFNIEGS
Sbjct: 301 DAANVHNYRRCIMSFDISPCDVR-----------------------MEGNLLWAFNIEGS 360

Query: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGV 420
           AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDP+RTPRKPQYVMASE+PLVLHSCEFEGV
Sbjct: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPVRTPRKPQYVMASENPLVLHSCEFEGV 420

Query: 421 KFRCSSDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVA 462
           KFRCS+DAGEALQLHL+NEIRTY+LQAAIFKEALLSCLPITND S SD RK+KKK CHV 
Sbjct: 421 KFRCSTDAGEALQLHLTNEIRTYELQAAIFKEALLSCLPITNDESFSDNRKIKKKICHVP 446

[Close]

BLAST of ClCG08G007160 vs. ExPASy TrEMBL
Match: A0A6J1JQK1 (tRNA pseudouridine(38/39) synthase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488950 PE=3 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 2.9e-187
Identity = 359/487 (73.72%), Postives = 384/487 (78.85%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAEHSLDHR  TGA+ TTSG +EFQPFD N I +LQSQL LLQGRVK LEEENS LSS
Sbjct: 1   MDGAEHSLDHRGATGAMETTSGTDEFQPFDRNLIENLQSQLRLLQGRVKVLEEENSNLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESG-----TTKKKAITVL-------------QYLL 120
           RLA+C CSERRMN DDGS SIEKSK+ G     TT+KKA+                +Y+ 
Sbjct: 61  RLASCYCSERRMNFDDGSSSIEKSKKYGSLKDKTTEKKAVEKTPGYNTRILDHCSKRYIA 120

Query: 121 LK-------FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVG 180
           LK       FYGFASEAQMEPTVESEIFRAL+KARLLVGGRKESCYSRCGRTD+GVSSVG
Sbjct: 121 LKVMYFGRRFYGFASEAQMEPTVESEIFRALDKARLLVGGRKESCYSRCGRTDKGVSSVG 180

Query: 181 QVISLYLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSA 240
           QVI+LYLRSNLKDPP+G N NHN +E HDGEIDYVRVINRVLPNDIRVLGWCTVP+GFSA
Sbjct: 181 QVIALYLRSNLKDPPNGENGNHNSKEHHDGEIDYVRVINRVLPNDIRVLGWCTVPVGFSA 240

Query: 241 RYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKM 300
           R+S    CL  R             Y+    NL++    AME AGKKFVGEHDFRNFCKM
Sbjct: 241 RFS----CLRRRYK-----------YLFWGANLNI---SAMESAGKKFVGEHDFRNFCKM 300

Query: 301 DAANVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGS 360
           DAANVHNYRRCIMSFDISPCDVR                       MEGNLLWAFNIEGS
Sbjct: 301 DAANVHNYRRCIMSFDISPCDVR-----------------------MEGNLLWAFNIEGS 360

Query: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGV 420
           AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDP+RTPRKPQYVMASE+PLVLHSCEFEGV
Sbjct: 361 AFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPVRTPRKPQYVMASENPLVLHSCEFEGV 420

Query: 421 KFRCSSDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVA 462
           KFRCS+DAGEALQLHL+NEIRTY+LQAAIFKEALLSCLPITND S SD RK+KKK CHV 
Sbjct: 421 KFRCSTDAGEALQLHLTNEIRTYELQAAIFKEALLSCLPITNDESFSDNRKIKKKICHVP 446

[Close]

BLAST of ClCG08G007160 vs. ExPASy TrEMBL
Match: A0A1S3C3Y8 (tRNA pseudouridine(38/39) synthase isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496569 PE=3 SV=1)

HSP 1 Score: 661.0 bits (1704), Expect = 4.2e-186
Identity = 365/483 (75.57%), Postives = 380/483 (78.67%), Query Frame = 0


Query: 1   MDGAEHSLDHRETTGAIGTTSGANEFQPFDGNQIASLQSQLLLLQGRVKELEEENSKLSS 60
           MDGAE   D  ETTGAI  T  ANEFQPFDGNQIASLQSQL LLQ RVKELEEENSKLSS
Sbjct: 1   MDGAELFTDITETTGAIRKTLEANEFQPFDGNQIASLQSQLRLLQDRVKELEEENSKLSS 60

Query: 61  RLATCRCSERRMNSDDGSRSIEKSKESGTTKKKAI-------------TVLQYLLLK--- 120
            LA+C CSERRMN  D S SIEKS ESGTTKKK++                +Y+ LK   
Sbjct: 61  PLASCCCSERRMNFGDRSCSIEKSTESGTTKKKSVERTTGYNTRILDHCSKRYIALKVMY 120

Query: 121 ----FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDRGVSSVGQVISL 180
               FYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTD+GVSSVGQVI+L
Sbjct: 121 FGQRFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSRCGRTDKGVSSVGQVIAL 180

Query: 181 YLRSNLKDPPDGANSNHN-EEQHDGEIDYVRVINRVLPNDIRVLGWCTVPIGFSARYSIQ 240
           YLRSNLKDPP+  NS HN EEQHDGEIDYVRVIN+VLPNDIRVLGWC VP+GFSAR+S  
Sbjct: 181 YLRSNLKDPPNAENSCHNAEEQHDGEIDYVRVINKVLPNDIRVLGWCPVPVGFSARFS-- 240

Query: 241 HVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKFVGEHDFRNFCKMDAANV 300
             CL  +             Y     NLD+    AMERAGKKFVGEHDFRNFCKMDAANV
Sbjct: 241 --CLRRKYK-----------YFFWGANLDI---SAMERAGKKFVGEHDFRNFCKMDAANV 300

Query: 301 HNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMMEGNLLWAFNIEGSAFLWH 360
           HNYRRCIMSFDISPCDVR                        EGNLLWAFNIEGSAFLWH
Sbjct: 301 HNYRRCIMSFDISPCDVR-----------------------TEGNLLWAFNIEGSAFLWH 360

Query: 361 QVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASESPLVLHSCEFEGVKFRCS 420
           QVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASE+PLVLHSCEFEGVKFRCS
Sbjct: 361 QVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASENPLVLHSCEFEGVKFRCS 420

Query: 421 SDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSDKRKLKKKNCHVALLSRP 463
           SDAGEALQLHLSNEIRTY+LQAAIFKEALLSCLP  NDGSSSD RKLKKKN HVALLSRP
Sbjct: 421 SDAGEALQLHLSNEIRTYKLQAAIFKEALLSCLP--NDGSSSDNRKLKKKNSHVALLSRP 440

[Close]

BLAST of ClCG08G007160 vs. TAIR 10
Match: AT1G34150.1 (Pseudouridine synthase family protein )

HSP 1 Score: 384.4 bits (986), Expect = 1.5e-106
Identity = 212/444 (47.75%), Postives = 283/444 (63.74%), Query Frame = 0


Query: 38  QSQLLLLQGRVKELEEENSKLSSRLATCRCSERRMNSD----DGS-----RSIEKSKESG 97
           +++L+ L+ RVKELE EN+KL S++++C+C +  +  D    D S     R + K  ++ 
Sbjct: 22  ETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVKHDRSLSDSSSLVRRRRVRKGDKNS 81

Query: 98  -----TTKKKAITVLQYLLLKFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYSR 157
                 +K+     + Y   +FYGF++EAQMEP++ESE+F+ALE+ RLLVG +K+SCYSR
Sbjct: 82  IPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLLVGDKKDSCYSR 141

Query: 158 CGRTDRGVSSVGQVISLYLRSNLKDPPDGANSNHNEEQHD-GEIDYVRVINRVLPNDIRV 217
           CGRTD+GVSS GQVI+L+LRS LK PP  + +  N    +  E DYVRV+NR LP+DIRV
Sbjct: 142 CGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIRV 201

Query: 218 LGWCTVPIGFSARYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQAMERAGKKF 277
           +GW   PI F AR+S      Y R             Y   R NL++    AM+ AGKKF
Sbjct: 202 IGWSPAPIDFHARFS-----CYARE----------YKYFFWRQNLNL---SAMDFAGKKF 261

Query: 278 VGEHDFRNFCKMDAANVHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISVQCLIDMME 337
           +GEHDFRNFCKMD ANVH Y R +  F++SPC                        +  E
Sbjct: 262 IGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQ-----------------------NSHE 321

Query: 338 GNLLWAFNIEGSAFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKPQYVMASES 397
           G+ L  F + GSAFLWHQ+RCMVAV+FM+GQG+E  DV+D LLD  +TPRKPQY++ASE 
Sbjct: 322 GDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEI 381

Query: 398 PLVLHSCEFEGVKFRCSSDAGEALQLHLSNEIRTYQLQAAIFKEALLSCLPITNDGSSSD 457
           PLVL +CEFE V F CS  A E+L+ H  NE  TYQL++ I++EAL +CLP++N+ S+ +
Sbjct: 382 PLVLRTCEFENVDFICSPGAAESLRSHFKNESLTYQLESVIYQEALRNCLPLSNNVSTEE 424

Query: 458 K-----RKLKKKNCHVALLSRPTE 462
                  K KK+  HV LLSRPTE
Sbjct: 442 SSCNGVEKKKKRAEHVPLLSRPTE 424

[Close]

BLAST of ClCG08G007160 vs. TAIR 10
Match: AT3G06950.1 (Pseudouridine synthase family protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-08
Identity = 83/323 (25.70%), Postives = 124/323 (38.39%), Query Frame = 0


Query: 83  KSKESGTTKKKAITVLQYLLLKFYGFASEAQMEPTVESEIFRALEKARLLVGGRKESCYS 142
           K  +SG  K +   V+ Y   +F G+  + +  PT++S + +AL +   L  GRKE    
Sbjct: 34  KVSDSGAYKWR--LVIAYDGTRFAGWQYQ-ESPPTIQSMLEKALIQITEL--GRKELQLI 93

Query: 143 RCGRTDRGVSSVGQVISLYLRSNLKDPPDGANSNHNEEQHDGEIDYVRVINRVLPNDIRV 202
             GRTD GV + GQV       N        +S H              +N +LP DIRV
Sbjct: 94  GAGRTDAGVHAWGQVAHFVTPFNY----TSLDSFH------------AALNGLLPKDIRV 153

Query: 203 LGWCTVPIGFSARYSIQHVCLYCRNNVNAYSGISCCLYMQHRNNLDMHFHQA-------M 262
                    F AR+S              Y+      + +H       +H A       M
Sbjct: 154 RELSAAVPEFHARFSASSKVY----RYQIYNDTFMDPFQRH-----WAYHCAYKLNASKM 213

Query: 263 ERAGKKFVGEHDFRNFCKMDAAN-VHNYRRCIMSFDISPCDVRLVLVSDLLICFPIEISV 322
             A   FVG+HDF  F      + V +  + I  FD+                       
Sbjct: 214 REAANLFVGKHDFSAFANATREDGVPDPLKTISRFDV----------------------- 273

Query: 323 QCLIDMMEGNLLWAFNIEGSAFLWHQVRCMVAVVFMVGQGLEDPDVVDILLDPLRTPRKP 382
                +  G+LL    +EGS FL+ QVR MVA++  +G+   D D+V ++L+        
Sbjct: 274 -----IQMGSLL-QLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLA 294

Query: 383 QYVMASESPLVLHSCEFEGVKFR 398
           +Y     SP   H      VK++
Sbjct: 334 KYTSLPASP---HGLCLVSVKYK 294

The following BLAST results are available for this feature:

BLAST of ClCG08G007160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884605.1	1.0e-194	77.39	tRNA pseudouridine(38/39) synthase isoform X2 [Benincasa hispida]	[more]
TYK04459.1	1.9e-193	71.16	tRNA pseudouridine(38/39) synthase isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038884603.1	2.8e-192	76.70	tRNA pseudouridine(38/39) synthase isoform X1 [Benincasa hispida] >XP_038884604....	[more]
KAG6578858.1	1.4e-188	74.33	putative F-actin-capping protein subunit beta, partial [Cucurbita argyrosperma s...	[more]
XP_023551060.1	1.9e-188	74.13	tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita pepo subsp. pepo] >XP_0...	[more]

BLAST of ClCG08G007160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SX07	2.6e-55	39.16	tRNA pseudouridine(38/39) synthase OS=Bos taurus OX=9913 GN=PUS3 PE=2 SV=1	[more]
Q9JI38	3.7e-54	37.12	tRNA pseudouridine(38/39) synthase OS=Mus musculus OX=10090 GN=Pus3 PE=1 SV=2	[more]
Q9BZE2	1.8e-53	38.99	tRNA pseudouridine(38/39) synthase OS=Homo sapiens OX=9606 GN=PUS3 PE=1 SV=3	[more]
P31115	8.6e-43	34.22	tRNA pseudouridine(38/39) synthase OS=Saccharomyces cerevisiae (strain ATCC 2045...	[more]
Q9UTB3	8.6e-43	38.36	Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of ClCG08G007160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C242	9.4e-194	71.16	tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1FEX0	1.2e-188	74.33	tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JWD4	4.5e-188	73.92	tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JQK1	2.9e-187	73.72	tRNA pseudouridine(38/39) synthase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S3C3Y8	4.2e-186	75.57	tRNA pseudouridine(38/39) synthase isoform X3 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of ClCG08G007160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34150.1	1.5e-106	47.75	Pseudouridine synthase family protein	[more]
AT3G06950.1	1.4e-08	25.70	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29
None	No IPR available	PANTHER	PTHR11142:SF5	TRNA PSEUDOURIDINE(38/39) SYNTHASE	coord: 36..464
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 236..432 e-value: 1.1E-36 score: 128.2
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 259..392 e-value: 1.1E-27 score: 96.6
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 83..218 e-value: 1.3E-25 score: 91.7
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 36..464
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 93..400

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G007160.2	ClCG08G007160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0008033	tRNA processing
biological_process	GO:0009451	RNA modification
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding