ClCG08G006630 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G006630
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA-binding protein 2
LocationCG_Chr08: 19078840 .. 19086197 (+)
RNA-Seq ExpressionClCG08G006630
SyntenyClCG08G006630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCGAAACGTTTACTCGGAAACAACAGATAGCTCTAAATTAAATCGGCAGTTAGGGTTTAGGAATCTCCAAATTCTGCGTGAAGCTCAATTCATTCGTCTCCGCTTTCCAAGATCCCGATTTCCCTCTGTCTTCTGAAGCATTAATTTTGGAAAATTGCAGCATATATGGCGGATGATTATTGGAATCGCCAGCAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTACTGATTATGGTAGGCCCCTGTGTTTATTATGTTTAATTTGTCGCCACTTGAAGCCGCTTTTCCGCAATTTGGGTTTCTTTTTTCGAATTCAGTTGCATATAATGATTTTGCAGTTAGTTCGGCAGTGAATTTTGATGGGCTAATTCCCTAACAATATCTGGAAAACCAATGAAAACATTCTCGTATTGTTTGGTTTGATTTTTTAAGTTATCTGTGGACAATCAGTCTACACAAAGTAATTGAATTCAGGTTTATTCTGATAAAGTTGTAGTTGAAAATTCTGGATGAAGAAGAATGTGCACCAAATCATCTCTTCCCCAGCTTCTAGGTGGGTGTTATGTAGATCTTCGAAGTGTGTCTTTCATGGGGTATTAAAAAGCTTTGATGGTCCAATGCACTTCATCTGATAGATGATACAAGGAAATTCTCTTGTTTTTGGATCTTCAGAAAGTTCTAGAAAGGGTCTCATTAAAAGTTTTAATGTCCTCATGAACTGAAACTTGGTGATAGTGCCCTTCTTTAATTTTGAAATTTTACTTCATATTTTGAACCTTACTGAAAGTTCTCAGGGGATGAAAATGAACTTTATGAACCATTCATACAACTTTCACGATCTCAAGGAAGAAACCATCGCAATGAATCTTAATTGTGTTGGGGGTAGCTTGTCGTTGCCCTATTTCTGTATAATGCCATCATGGGGAAATCCAATCTCTTCAACGTTTTGGTCCTTGTTAATTTAGAAAATTCATACCTTGCTGCTCAATAAATAGAAGGTTGCTCTATGTTGACATTCTGACAAAGAGAGTTATTATTTACTTGACTTCCTATAATGTGAGAGAAGGCTTTCCTATTATCTCTCCAATTTCAGAGGTGTTTAAGCGCTCAAGTGGGAGAAAAAAGAAAGAAAAATTGATGCATCTTTTCTTCTTTTGTCCTCTTGCAGCTGCTTGTTAGGAAGACCTCTTTAAAGTTTTTAGTATTCAGTGGCTTTGGCCTAGCAAAGCTTCTGAAGCCCTGGATCAATTCATTGGTAATACGCAATTTCAAGTGCAAGCCAAAATTCTTCAGTTATTTATTTTAACTGGCCTGCTTTTATGCTTCCTGCGTAATTGAGTCTTTTATTATTGTGTTTAGACTTTTATTGTTTTTGTTATCTTTTGTTACTTTTGTTTCCTTTACTTCTCTGATCTCTCCCTTGTGGAGTTTTGTATCTATTGAGCATTAGTCTCTTGTCATTTCATAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAGAAAAAAGGTTTTGTCTCTTGTTAAGGAAAGTGTTCACCCTGCTAAATGTTCTTGGACTTTTGCTCATGGGAGCTCCCATGAAGGTAGCTAAAGGAGTTATCATCAGCAATCAATTATGCTAAGGAAAGCATACTAGAAGAAAATGAGGGGTTGGAGGTTGGGGGAATGGTGTACTGTTGTAAATGATATAATGTTATAAATGATAGGAGAGGTCTATCCATGTACGGTGCTCATACAAGAATCTAAATCGAAGGTGGATACAAATGTAATAAAAACACTCCGGAGCTTGGGGGTGATTTGATGGACTGAAAAGTTGAGTATTGGAGTGCTTTTGAGGGGCAGATTGCTTTATAGTCTGAAAGGAAGTAACAAATATGGAGAGGAAGAAACTCTGGAATACAGTGGGAAATGTATTTGGCTGCTATGATGGAAAGTGGTGTCTTGCGAGAGACTTCAATGTAGTGAGAATAGTAACGAAATCTTCAGCCAGAGCAGCAATTGAAAGCATGATGGATTTGGATAAGTTAGTTGATGAGATCAGAATGATCAAAATGGAATAATGTGCCTGGTTGAGTTTTAGAGATGTTCTTGTGCAGTCCCTAGTGGATTGGTTTTGGGTGTCCTAGGAATGCTTAACAAAGTTTCATCTGAAAGATCTGTGTTATATTAAAAGGAAGGAATGGTTAACAAAATTTCAAGAGTTGAAGACAATAAAGAAGGCGAGATCAAGTTTTTGACCCCTTTTAAATGTATAGGGAACAGGGGAGCTTGATGGGACCATGCCCTTTTAGATGGGAGAACCCATGGGTGAAACATCAAGAATTTTGGAGGAGATAGGGAGTTAACAATTATGTGGACAGTGGGAAAATGATATTAGTAGCTGCACACTTTGAAAGGAATTATAAACCAATGGGAATTGGATACATTTGAAAATTTTGGTACCGGAGGGAGTTGAAAATCTAATGAGCAACATATATAGAAAAAGGAGAATGGGTGCTTGGAGCGGAAAGCTAGGGAGACAAAATCAATGCAATGGCAACTGTGTGGCATCATCTGCAAAAAGGTTTTGAGTTGCTTCCAAAAATTTAAATGGTTAAAAGAAGACGATGTTAGACTTTTGGTATATACATTTATACAATAATAATGTTTGTAGCGAAAGATTTGTTTTGTTTTTTTGAATTACGCTTGGTTGTTCTTACAAGAAACTTTAGGTTCATATATTGGGTATAATTAGTATTTTCATAGTATGTATTCATATTGTGATCCCCTACCTTAATAATGTTTAGATACTTCCATAAAGGTTTTTGGGCATGATCCACATTTGTTAACAAATAGTTGACATCCTACAATAATCTTGTAACCTTTCTGAAGAATTTTTCACTTGGTTTCATAAACTAGAAGCTTGAGGTTTTTTTGGGATTGTAACCAAATTTTCACTTGATTTACAAATGGTTCTGTCTAAGACTTTGATTTTCTATTTAATTTTGCTTTTATAGTGGTCTTCCGTCCATTGAACTTAAAGTAGTATTATACATTTGGATTGGGAGGATGAAGAGATTAGATACGTGGAATATGAAAGTATGACTGAACTGCAAAAAAAGTTAATTTAGATAGTACGATAGGACTTTCTATACTAATTGAACTTCGTTGATTTAATTGAGTATTACTGAAATAGTTTGTGGATTTTCCTTTTTACATATCTTTTATTCCTTTGCTAATGGAGCATCTATTCTTTCATGTGTGCAATAAACTCATTTTTTCCTTCTTCCCTTATTTATCTTCTTTTGGTCTTGTTACCTGTTTTCCTTATGGTAAATTGTAAATGGAATCATGCCCTGCTTTCACTCTCTGCAGAACTTCCATCCTCTGGATTGCCTACTGGCCATGAGATGCACAATTACTTAGCAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGGTATGACTGGCTAGATTTATTTTCTTTTCTTGCCTCGCAGTTTGAGTGCTGAAAACTTTTTGTAATTGCTTCTGAAGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTGCCTGTAGATCCGATGAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCGTATCCTTTTTATAGGTGGTGATGGTACAAGCAAAATTATATTGACTTTTTTTTTTTTCCCTCTTTTCAATTATTTACTTAAAAAACTACATTCCTTTATTCATATAAACAAAACTACATTCCTTCACTCCATTGTAGATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATGTTAGTCTATTACTAGTAACTGTTTTGTTGTTTTTGAATTTTCTTTGTATACTTTTAAACTCATGCTAACCTTTACTATGTTTTTTGTGTCAATTTTGTTTCAAATTTTAGCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCTGCAACTGCCATGAGTGCATTGCAAGGTGAATTATATTCACATTTTTTCCATATTGGCTTTTGCAGTTCCTATAGCAGCAATATTTTTCCCTAATAGCTACTAGTTTACTTCAGTAGAAACGGTTGGAATTGAATTTCTCATTCAAAATCTTATCATGTTTGTATTTTTATTGAACTTGTGTATACATGCATGCACATCATGTATCTCTGGTTATGGGGGTGGCTATTAGAGTACTTTTATGTGGAGGTGTTCTGGACAAGTCAGGAGTTTCGGTTGGAGTTGGAAAACTTATTTAGTTTATGGCCACTACATAGATTCTAAGGTGTTGATTTTAGGGTTTCCAGATGAGTATTTTTCTTGTTTGTTCTCTTTTGGGGGTAGGGGGCTATACGAGCTTACTGTTACTTTGATAGACAGCCTAACTTGAGAGAGAAGGTTGTTGGCCTATTTTTGTTAAGATCTGTGCATTGGGAGCTTATTTTCAGTGCAAGAGATTATTGAAGTTGTTTGATGTATCTTTATCCAGAGAAGATTTAAAAATTTGTCTGGACTCCTTTTTCGGGGAGGGTTGAAAACTCTCAAGACAAGATTTTTGCACCCTTCCAGTCGAGGAATCAATGGATATTGGATCGTTTCTGTTTAGGGCAATGGAGCCTTCGGAGATTTCTTCTGCGCTTGCATTATGCGGAATGCTCAAATGTGACCTTGGAGAGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGAAGATAATCTGATTTTATTGCTGAAGGCTTTGAGATTTCTTCATCGCACTTTTATCAGACTCTGACTTTTCCTTGACAAACCAAAGAAAACCTCTTTTTCTTCCTTTCATGGCCATTCATTTACAAAGAGAGCTAAATGCTGTGGCTTAATTCAGTTAGAGCAGTGCTCGGAGATGTGTGGTTAGCCTTTGATATAAACAGAAGAAATTTTCAAGATTACAAGACATGCAGTTCTCTACGAAGTATAGTGGGTTTTTTGATCCACCTTTCGTGAGCTAGTCTTGTAATCTCATCTTATTAATGAAATTTGTTTCCTATTAAAGGAAACATCTAGGTCATTGTTTAATTAATTTTCTGTTATAAACGGAAGTAGTTTTTCAAAAAAAAAAAAAAAATGGAAATAGTTTCATCATTTATGTGGCAACTTGTTTCTGTTTAGTTTTTGATGAAAGAATACACGATAGATTTGCTAAAAATGTATCTGATTTGCACAGGTTATAAAATGGACGAACAAGATCCTGAATCTAATTATTTGCGACTACAATTCTCACGACATCCAGGTCCGAGGTCTGGATCTGGAACTGGCGGCAAAAGGTGAATAAGCTATAGAGACTGGATGACCAATTTAAATGGGAGACGTATCATCTTCTAGTGCACATTTTACTAGCTGCTTGTGCATCCATTATATGTTATTAGACATGCTGTTGTTAAGATAGGCAAATTGTAGCCGACCCCACGGAATATTAAAGTTGCTTGTAAATTTAAGGGGATTAGATTCAGAGTGTTTCAATAGTTAACTGTGCAATTGAATTTTGATGTACAATTATGTCAATGCTTCAGAATTCGAAGATATACCTGGTACAATTTTTATAAGCTATTGGTTCTGACCCCTCACAAACTGTGAAAACGCTCCCACAAATTCTGGCATGGTGGATTAATATTCTGAACTCCAATAGGCTAGTATTTGGTTTTATGACAAAAGTTAATCTAGGTTATCATTTAAAACTGCTCATAAGTTTGATGTATTTTTACTCATTGCATCCCAATGGTTAGGAATATTGAATTAGTGGAAATATTTTTATGAATGGAGCAACAGGGTTGAAAACAAGTAATTAGCTCAAGGAGGTACATGTCTTAGTTGCTGAAATTACATAACATTGTTTATACTCTATTTGGTAAATCAATTAGTACAACCTTTTATTCAATTTTTTTGATTGCTATAATGTTTGCATGGTAAGATTCATTCAGGTACTATAGCAGGAATTTGGAGAGTTCCTGTACCCTCCAACACACAAAATCAGTCTATTCTGCTGGTCATTCCTCGCATACAAATCTGCAATTCCTCAGGTAACTAACTTTCTAAAATTGTGCTTAACTGTACGACGACCATATGCAATAAAAAGTTCTAAACTAAGATAGTTTGTGACAATAAAATCTTCCTCTTGAAATATGATGTATTTTCCTCTCTGTAAAAGAAAATCATTTGAATGAGGTATTAAATATATTGTAAGTTTCCTAGCTATCATATATTAGGAGAGGGCATATAGTAAAGTTGTGGCTAATTAATCACTATGTAGAGGTCAAGAGACGACTGCAAGCAATGCTATTCTATTGAGTTGTTTGTTTTTCTTGGTGATTGCATTAAGATCAAAGATGGATTCTGAATTTTCCATGGTTTTTGGCCCCAGCTATTTATGAGTTAGAGTGTGATGGTGGTAAAAGGTTGGCCCCAGTGTTGATTTTGCATCCCAAATAGTTCTAATTTGAATTTTCCATAGGCTTTTAGACCCATACCATAGGAAAAAACTTCATGAAAACTTAATAAATGCCAGGGGCCAAGTTCTGAAGCAGAACAAAAAACCCATTTGCTTGGGATTGGAGAAAAATGGGTTCTTCAACTGCAACTGCAATGCCCTCCTTTGTTATCTCTCTTCTTCTTTCATTGTTGTCTTTGAATCTGCCATCAAAATTTAGTGCAGAATATGTTCATTATCCACCTGTTTCTGAGTCAATAGTTCCCTATTTTCCCTTTGTATACAGACCAATCCCATCCCCATCTGAGAAGCCTTATGAACCACAACCCACATCAACACCACTAAAGCAGTCCCAACCGCCATTATCTCCTTTTGCCCAGCCTCTAGATCCCTATTTTCCTTTTGTATACATACCGATGCCATCCCCATCTCAAAAGCCTTATGAAGATGCATCACCTTTGCCGTCTCCGGTGTTCGCAAGACCTGTAGTTCCCTATTATCCCTTCCGATTTCCACCACCTCCCCCTCGACAATACCTCTATCCTCCGAATCCGATTGACCACCTTCAATCGCCTTCGCCTCTGCCTCTGCCTCCTTACTAA

mRNA sequence

CTTCGAAACGTTTACTCGGAAACAACAGATAGCTCTAAATTAAATCGGCAGTTAGGGTTTAGGAATCTCCAAATTCTGCGTGAAGCTCAATTCATTCGTCTCCGCTTTCCAAGATCCCGATTTCCCTCTGTCTTCTGAAGCATTAATTTTGGAAAATTGCAGCATATATGGCGGATGATTATTGGAATCGCCAGCAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTACTGATTATGAACTTCCATCCTCTGGATTGCCTACTGGCCATGAGATGCACAATTACTTAGCAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTGCCTGTAGATCCGATGAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCTGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGACGAACAAGATCCTGAATCTAATTATTTGCGACTACAATTCTCACGACATCCAGGTCCGAGGTCTGGATCTGGAACTGGCGGCAAAAGGTACTATAGCAGGAATTTGGAGAGTTCCTGTACCCTCCAACACACAAAATCAGTCTATTCTGCTGGTCATTCCTCGCATACAAATCTGCAATTCCTCAGACCAATCCCATCCCCATCTGAGAAGCCTTATGAACCACAACCCACATCAACACCACTAAAGCAGTCCCAACCGCCATTATCTCCTTTTGCCCAGCCTCTAGATCCCTATTTTCCTTTTGTATACATACCGATGCCATCCCCATCTCAAAAGCCTTATGAAGATGCATCACCTTTGCCGTCTCCGGTGTTCGCAAGACCTGTAGTTCCCTATTATCCCTTCCGATTTCCACCACCTCCCCCTCGACAATACCTCTATCCTCCGAATCCGATTGACCACCTTCAATCGCCTTCGCCTCTGCCTCTGCCTCCTTACTAA

Coding sequence (CDS)

ATGGCGGATGATTATTGGAATCGCCAGCAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTACTGATTATGAACTTCCATCCTCTGGATTGCCTACTGGCCATGAGATGCACAATTACTTAGCAAGTGATGATCGTGGTGGTCCTCGGTCTGTAAAAGATACACAAACAATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTCCTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTTATTACCTGATCCTATTGTAATGAGTCGTCCTCCTGCAGTTTCTCCTGATCTTGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTGCCTGTAGATCCGATGAGCAGACCTGGACGTGAAACTGTGCCTCTTCCTCCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTCCAGATAGTTCCCGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCTGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGACGAACAAGATCCTGAATCTAATTATTTGCGACTACAATTCTCACGACATCCAGGTCCGAGGTCTGGATCTGGAACTGGCGGCAAAAGGTACTATAGCAGGAATTTGGAGAGTTCCTGTACCCTCCAACACACAAAATCAGTCTATTCTGCTGGTCATTCCTCGCATACAAATCTGCAATTCCTCAGACCAATCCCATCCCCATCTGAGAAGCCTTATGAACCACAACCCACATCAACACCACTAAAGCAGTCCCAACCGCCATTATCTCCTTTTGCCCAGCCTCTAGATCCCTATTTTCCTTTTGTATACATACCGATGCCATCCCCATCTCAAAAGCCTTATGAAGATGCATCACCTTTGCCGTCTCCGGTGTTCGCAAGACCTGTAGTTCCCTATTATCCCTTCCGATTTCCACCACCTCCCCCTCGACAATACCTCTATCCTCCGAATCCGATTGACCACCTTCAATCGCCTTCGCCTCTGCCTCTGCCTCCTTACTAA

Protein sequence

MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGTGGKRYYSRNLESSCTLQHTKSVYSAGHSSHTNLQFLRPIPSPSEKPYEPQPTSTPLKQSQPPLSPFAQPLDPYFPFVYIPMPSPSQKPYEDASPLPSPVFARPVVPYYPFRFPPPPPRQYLYPPNPIDHLQSPSPLPLPPY
Homology
[Close]
BLAST of ClCG08G006630 vs. NCBI nr
Match: XP_038884976.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 551.6 bits (1420), Expect = 5.5e-153
Identity = 265/273 (97.07%), Postives = 270/273 (98.90%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSPG+LKRPRT+YELPSSGLP+GHEMHNYLASDDRGG RSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGILKRPRTEYELPSSGLPSGHEMHNYLASDDRGGLRSVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180
           SPD+APNGRNIEYGNHLPVD MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDIAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGSGTGGKRYYSRNLESSCTLQHTK 274
           FSRHPGPRSGSG+GGKRYYSRNLESSCTLQHTK
Sbjct: 241 FSRHPGPRSGSGSGGKRYYSRNLESSCTLQHTK 273

[Close]
BLAST of ClCG08G006630 vs. NCBI nr
Match: XP_038884977.1 (RNA-binding protein 2-like isoform X3 [Benincasa hispida])

HSP 1 Score: 545.8 bits (1405), Expect = 3.0e-151
Identity = 271/304 (89.14%), Postives = 281/304 (92.43%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSPG+LKRPRT+YELPSSGLP+GHEMHNYLASDDRGG RSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGILKRPRTEYELPSSGLPSGHEMHNYLASDDRGGLRSVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAH---- 180
           SPD+APNGRNIEYGNHLPVD MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVA     
Sbjct: 121 SPDIAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVARILFI 180

Query: 181 -IFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240
            IFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN
Sbjct: 181 DIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240

Query: 241 YLRLQFSRHPGPRSGSGTGGKRYYSRNLESSCTLQHTK------SVYSAGHSSHTNLQFL 294
           YLRLQFSRHPGPRSGSG+GGKRYYSRNLESSCTLQHTK      S +S G+++  +LQ L
Sbjct: 241 YLRLQFSRHPGPRSGSGSGGKRYYSRNLESSCTLQHTKISLFRLSFHSYGYATPQSLQLL 300

[Close]
BLAST of ClCG08G006630 vs. NCBI nr
Match: XP_031743539.1 (RNA-binding protein 2 isoform X5 [Cucumis sativus])

HSP 1 Score: 544.3 bits (1401), Expect = 8.8e-151
Identity = 261/273 (95.60%), Postives = 266/273 (97.44%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYL SDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180
           SPDLAPNGRN+EYGNHLPVD MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGSGTGGKRYYSRNLESSCTLQHTK 274
           FSRHPGPRSGSG+GGKR YSRNLESSC LQHTK
Sbjct: 241 FSRHPGPRSGSGSGGKRCYSRNLESSCVLQHTK 273

[Close]
BLAST of ClCG08G006630 vs. NCBI nr
Match: XP_031743536.1 (RNA-binding protein 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 544.3 bits (1401), Expect = 8.8e-151
Identity = 261/273 (95.60%), Postives = 266/273 (97.44%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYL SDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180
           SPDLAPNGRN+EYGNHLPVD MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGSGTGGKRYYSRNLESSCTLQHTK 274
           FSRHPGPRSGSG+GGKR YSRNLESSC LQHTK
Sbjct: 241 FSRHPGPRSGSGSGGKRCYSRNLESSCVLQHTK 273

[Close]
BLAST of ClCG08G006630 vs. NCBI nr
Match: XP_038884975.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 542.3 bits (1396), Expect = 3.3e-150
Identity = 264/278 (94.96%), Postives = 269/278 (96.76%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSPG+LKRPRT+YELPSSGLP+GHEMHNYLASDDRGG RSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGILKRPRTEYELPSSGLPSGHEMHNYLASDDRGGLRSVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAH---- 180
           SPD+APNGRNIEYGNHLPVD MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVA     
Sbjct: 121 SPDIAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVARILFI 180

Query: 181 -IFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240
            IFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN
Sbjct: 181 DIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240

Query: 241 YLRLQFSRHPGPRSGSGTGGKRYYSRNLESSCTLQHTK 274
           YLRLQFSRHPGPRSGSG+GGKRYYSRNLESSCTLQHTK
Sbjct: 241 YLRLQFSRHPGPRSGSGSGGKRYYSRNLESSCTLQHTK 278

[Close]
BLAST of ClCG08G006630 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.1e-84
Identity = 163/253 (64.43%), Postives = 190/253 (75.10%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MAD YWNRQQ LLP  G+ KRPR DYE+P+SGLP+G+EMH     +DR G   VKD++TI
Sbjct: 1   MADGYWNRQQSLLPHSGLHKRPRPDYEMPASGLPSGNEMHYLSREEDRSGHPMVKDSKTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVM-SRPPA 120
           GSAYDRYLQ  Q+ SF SGE  T G +G+ R +         +P   L DP  M  R   
Sbjct: 61  GSAYDRYLQG-QVPSFTSGEASTVGALGLQRGIGG-------LPNHSLSDPSAMIGRHGG 120

Query: 121 VSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 180
             PDLAPNGR + YG   P+DP+SR G E   LPPDAS TLY+EGLP D +RREVAHIFR
Sbjct: 121 GGPDLAPNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFR 180

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 240
           PFVGY+E+RLVSKE+KHR GDPLILCFVDFANPACAATA+SALQGYK+DE +PES++LRL
Sbjct: 181 PFVGYREVRLVSKEAKHR-GDPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRL 240

Query: 241 QFSRHPGPRSGSG 253
           QFSR+PGPRSG G
Sbjct: 241 QFSRYPGPRSGGG 244

[Close]
BLAST of ClCG08G006630 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 4.3e-84
Identity = 162/261 (62.07%), Postives = 197/261 (75.48%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSP-GMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQT 60
           MAD +WNRQQ  LP P GMLKRPRT+Y+   SG+ +G+E+HNY+A ++  G + + DT+ 
Sbjct: 1   MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN--GHQMLNDTKI 60

Query: 61  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 120
           +GSAYDR+LQS  L+SF SGE    G +G  R V         +PG  L DP  M     
Sbjct: 61  LGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGV-------GELPGHSLGDPSAMGHLSG 120

Query: 121 V--SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHI 180
           V   PDL+ NGR++ +G  LP+D +SRPG ET+PLP DAS+TLYVEGLP DS++REVAHI
Sbjct: 121 VGGGPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHI 180

Query: 181 FRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYL 240
           FRPFVGY+E+RLV+KESKHRGGDPLILCFVDFANPACAATA+SALQGYK+DE +PES+YL
Sbjct: 181 FRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYL 240

Query: 241 RLQFSRHPGPRSGS-GTGGKR 258
           RLQFSR PG RSG  G  GKR
Sbjct: 241 RLQFSRSPGRRSGGPGPRGKR 252

[Close]
BLAST of ClCG08G006630 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 7.2e-63
Identity = 134/258 (51.94%), Postives = 173/258 (67.05%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASD-DRGGPRSVKDTQT 60
           ++ D+++   P  P  G      T Y +PS       +MH+YL+ D DRG P SVKDT++
Sbjct: 186 VSPDFFSTIGPTDPQEG------TPYLIPSG------DMHSYLSQDEDRGIPHSVKDTRS 245

Query: 61  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 120
           IGSAYDRYLQS+Q    PS E      +GM R   + M     MPGP + + ++     +
Sbjct: 246 IGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNM-----MPGPSMGE-LMAGCGGS 305

Query: 121 VSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 180
           +  D  PNGR++ +G    +D + RPGRE  PLPPD SNTLYVEGLP + SRREV+HIFR
Sbjct: 306 LPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFR 365

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 240
           PFVGY+E+RLV+++SKHR GDP +LCFVDF N ACAATA+SALQ Y+MDE +P+S  LRL
Sbjct: 366 PFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRL 421

Query: 241 QFSRHPGPRSGSGTGGKR 258
           QF R+PGPR G   GG+R
Sbjct: 426 QFFRNPGPRPGQ-RGGRR 421

[Close]
BLAST of ClCG08G006630 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 9.7e-60
Identity = 135/251 (53.78%), Postives = 160/251 (63.75%), Query Frame = 0 

Query: 1   MADDYWNRQ-QPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQT 60
           MAD YWN+Q Q   P  G +KRPR+D+E PSS +  GH    Y   +D      V DT+T
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVPDTRT 60

Query: 61  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 120
           IGSAYDRYLQSVQ     SGE    G + MGR        G  +      D  ++ R   
Sbjct: 61  IGSAYDRYLQSVQ-----SGE---GGSVSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGV 120

Query: 121 VSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 180
           +  D  PNG  I +      DP    GR    LP DASNTLYVEGLP + SRREVAHIFR
Sbjct: 121 LPLDHGPNGHTIGF------DPPEPVGRRN--LPSDASNTLYVEGLPSNCSRREVAHIFR 180

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 240
           PFVGY+E+RLV+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE + +S +LRL
Sbjct: 181 PFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRL 228

Query: 241 QFSRHPGPRSG 251
           QFSR PG R G
Sbjct: 241 QFSRKPGSRPG 228

[Close]
BLAST of ClCG08G006630 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.5e-28
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 142 MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDP 201
           M   GR   PLPPDAS+TLY+EGLP + +RREV+HIFRPFVG++E+RLV+KES+H GGDP
Sbjct: 22  MGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDP 81

Query: 202 LILCFVDFANPACAATAMSALQGYKMDE 230
            +LCFVDF NPA A  A+ ALQG+  D+
Sbjct: 82  HVLCFVDFDNPAQATIALEALQGHVTDD 109

[Close]
BLAST of ClCG08G006630 vs. ExPASy TrEMBL
Match: A0A0A0KCN5 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 3.3e-151
Identity = 308/473 (65.12%), Postives = 323/473 (68.29%), Query Frame = 0 

Query: 27  ELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFPSGEVPTHGE 86
           ELP+SGL TGH+MHNYL SDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSF SGEVPTHGE
Sbjct: 35  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 94

Query: 87  MGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDPMSRPG 146
           MGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAVSPDLAPNGRN+EYGNHLPVD MSRPG
Sbjct: 95  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 154

Query: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206
           RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 155 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 214

Query: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGTGGK-----RYYSR 266
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSG+GGK        + 
Sbjct: 215 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGTIVTNRAT 274

Query: 267 NLESS--------CTLQHTKSVYSAGHSS----------HTNLQFLR------------- 326
            L S+         +    KS Y  GHS+          H NL   R             
Sbjct: 275 WLTSAIAGIWRVPASSNTPKSAYIVGHSTYESVAPQKKLHENLVNARGQVNPSAWSWRKN 334

Query: 327 ------------------------------------------------------------ 386
                                                                       
Sbjct: 335 GFFNCNCIPPFVISLLLALVSLNLPSKFSAAYAHYPPPLPKKHKQSEPPVAQPFVSEPIV 394

Query: 387 --------PIPSPSEKPYEPQPTSTPLKQSQPPLSPFAQPLDPYFPFVYIPMPSPSQKPY 395
                   PIPSPSEKPYEP P   PLKQ Q PLSP + PL PYFPFVY+P+PSPSQKP 
Sbjct: 395 PYFPFVYVPIPSPSEKPYEPHP-PPPLKQPQSPLSPSSNPLVPYFPFVYVPLPSPSQKPC 454

[Close]
BLAST of ClCG08G006630 vs. ExPASy TrEMBL
Match: A0A1S3B4F0 (RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 3.6e-142
Identity = 247/257 (96.11%), Postives = 251/257 (97.67%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSP MLKRPRTDYELP+SGL TGH+MHNYLASDDRGGPRSVKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLASDDRGGPRSVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRPVANRMPVG+RMPGPLLPDPIVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180
           SPDLAPNGRNIEYGNHLPVD MSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGSGTGGKR 258
           FSRHPGPRSG G+ GKR
Sbjct: 241 FSRHPGPRSGFGSSGKR 257

[Close]
BLAST of ClCG08G006630 vs. ExPASy TrEMBL
Match: A0A6J1CKA2 (RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 5.2e-141
Identity = 243/257 (94.55%), Postives = 250/257 (97.28%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSPGMLKRPR DYELPSSGLPTGHEMHNYL SDDRGGPR+VKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRNDYELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHG+MGM RPVANRMPVGSRMPGP +PDP+VMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFNSGEVPTHGDMGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180
           SPDLAPNGRNIEYGNHLP+D M+RPGRETVPLPPDASNTLYVEGLP DSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPMDSMTRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGSGTGGKR 258
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]
BLAST of ClCG08G006630 vs. ExPASy TrEMBL
Match: A0A6J1JXN9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489771 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 9.5e-135
Identity = 234/257 (91.05%), Postives = 246/257 (95.72%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSPGMLKRPRT+YE PSSGLP  HEMHNY+A+DD GGPR+VKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRTEYEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQLSSF SGEVPTHGEMGMGRP+ANRMP+G+RMPGPLLPDP+VMSRP AV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIGNRMPGPLLPDPVVMSRPLAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180
           SPDLA NGRNIEYGNHLPVD  +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRP
Sbjct: 121 SPDLALNGRNIEYGNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240
           FVGYKELRLV+KESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGSGTGGKR 258
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]
BLAST of ClCG08G006630 vs. ExPASy TrEMBL
Match: A0A6J1FDW9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444852 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.5e-132
Identity = 231/257 (89.88%), Postives = 243/257 (94.55%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQTI 60
           MADDYWNRQQPLLPSPGMLKRPRT+YE PSSGLP  HEMHNY+A+DD GGPR+VKDTQTI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRTEYEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAV 120
           GSAYDRYLQSVQ SSF SGEVPTHGEMGMGRP+ANRMP+ +RMPGPLLPDP+VMSRP AV
Sbjct: 61  GSAYDRYLQSVQPSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRP 180
           SPDLA NGRNIEY NHLPVD  +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRP
Sbjct: 121 SPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240
           FVGYKELRLV+KESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ
Sbjct: 181 FVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGSGTGGKR 258
           FSRHPGPRSGSG+GGKR
Sbjct: 241 FSRHPGPRSGSGSGGKR 257

[Close]
BLAST of ClCG08G006630 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-70
Identity = 143/264 (54.17%), Postives = 187/264 (70.83%), Query Frame = 0 

Query: 1   MADDYWNRQQ----PLLPSPGML--KRPRTDYELPSSGLPTGHEMHNYLASD-DRGGPRS 60
           MAD+YWN+Q+    P+  +P +L  KRPR+D++     +P+G +MH+YL+ D DRG P S
Sbjct: 1   MADEYWNQQRQYQLPISSNPHVLPPKRPRSDFQGTPYLIPSG-DMHSYLSQDEDRGIPHS 60

Query: 61  VKDTQTIGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIV 120
           VKDT++IGSAYDRYLQS+Q    PS E      +GM R   + M     MPGP + + ++
Sbjct: 61  VKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNM-----MPGPSMGE-LM 120

Query: 121 MSRPPAVSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRRE 180
                ++  D  PNGR++ +G    +D + RPGRE  PLPPD SNTLYVEGLP + SRRE
Sbjct: 121 AGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRRE 180

Query: 181 VAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPE 240
           V+HIFRPFVGY+E+RLV+++SKHR GDP +LCFVDF N ACAATA+SALQ Y+MDE +P+
Sbjct: 181 VSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPD 240

Query: 241 SNYLRLQFSRHPGPRSGSGTGGKR 258
           S  LRLQF R+PGPR G   GG+R
Sbjct: 241 SKILRLQFFRNPGPRPGQ-RGGRR 253

[Close]
BLAST of ClCG08G006630 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 242.7 bits (618), Expect = 5.1e-64
Identity = 134/258 (51.94%), Postives = 173/258 (67.05%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASD-DRGGPRSVKDTQT 60
           ++ D+++   P  P  G      T Y +PS       +MH+YL+ D DRG P SVKDT++
Sbjct: 186 VSPDFFSTIGPTDPQEG------TPYLIPSG------DMHSYLSQDEDRGIPHSVKDTRS 245

Query: 61  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 120
           IGSAYDRYLQS+Q    PS E      +GM R   + M     MPGP + + ++     +
Sbjct: 246 IGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNM-----MPGPSMGE-LMAGCGGS 305

Query: 121 VSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 180
           +  D  PNGR++ +G    +D + RPGRE  PLPPD SNTLYVEGLP + SRREV+HIFR
Sbjct: 306 LPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFR 365

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 240
           PFVGY+E+RLV+++SKHR GDP +LCFVDF N ACAATA+SALQ Y+MDE +P+S  LRL
Sbjct: 366 PFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRL 421

Query: 241 QFSRHPGPRSGSGTGGKR 258
           QF R+PGPR G   GG+R
Sbjct: 426 QFFRNPGPRPGQ-RGGRR 421

[Close]
BLAST of ClCG08G006630 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 232.3 bits (591), Expect = 6.9e-61
Identity = 135/251 (53.78%), Postives = 160/251 (63.75%), Query Frame = 0 

Query: 1   MADDYWNRQ-QPLLPSPGMLKRPRTDYELPSSGLPTGHEMHNYLASDDRGGPRSVKDTQT 60
           MAD YWN+Q Q   P  G +KRPR+D+E PSS +  GH    Y   +D      V DT+T
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVPDTRT 60

Query: 61  IGSAYDRYLQSVQLSSFPSGEVPTHGEMGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPA 120
           IGSAYDRYLQSVQ     SGE    G + MGR        G  +      D  ++ R   
Sbjct: 61  IGSAYDRYLQSVQ-----SGE---GGSVSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGV 120

Query: 121 VSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFR 180
           +  D  PNG  I +      DP    GR    LP DASNTLYVEGLP + SRREVAHIFR
Sbjct: 121 LPLDHGPNGHTIGF------DPPEPVGRRN--LPSDASNTLYVEGLPSNCSRREVAHIFR 180

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRL 240
           PFVGY+E+RLV+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE + +S +LRL
Sbjct: 181 PFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRL 228

Query: 241 QFSRHPGPRSG 251
           QFSR PG R G
Sbjct: 241 QFSRKPGSRPG 228

[Close]
BLAST of ClCG08G006630 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.9e-43
Identity = 87/141 (61.70%), Postives = 103/141 (73.05%), Query Frame = 0 

Query: 110 DPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDPMSRPGRETVPLPPDASNTLYVEGLPPDS 169
           D  ++ R   +  D  PNG  I +      DP    GR    LP DASNTLYVEGLP + 
Sbjct: 42  DDFMLRRGGVLPLDHGPNGHTIGF------DPPEPVGRRN--LPSDASNTLYVEGLPSNC 101

Query: 170 SRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDE 229
           SRREVAHIFRPFVGY+E+RLV+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE
Sbjct: 102 SRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDE 161

Query: 230 QDPESNYLRLQFSRHPGPRSG 251
            + +S +LRLQFSR PG R G
Sbjct: 162 NESDSKFLRLQFSRKPGSRPG 174

[Close]
BLAST of ClCG08G006630 vs. TAIR 10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-05
Identity = 47/116 (40.52%), Postives = 50/116 (43.10%), Query Frame = 0 

Query: 294 SPSEKPYEPQPTSTPLKQSQPP----LSPFAQPLDPYFPFVYIPMPSPSQKPYED--ASP 353
           SP   P  P PT +P     PP     SPF  P  P     Y P PSPSQ P      +P
Sbjct: 644 SPPSPPPPPPPTFSPSPSIPPPPPQTYSPFPPPPPPPPQTYYPPQPSPSQPPQSPIYGTP 703

Query: 354 LPSPV--------FARPVVP---YYPFRFPPPPPRQYLYPPNPIDHLQSPSPLPLP 393
            PSP+        FA P  P   YY    PPPPP   L PP P  H  SP P P P
Sbjct: 704 PPSPIPYLPSPPQFASPPPPAPYYYSSPQPPPPPHYSLPPPTPTYHYISPPPPPTP 759

The following BLAST results are available for this feature:
BLAST of ClCG08G006630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884976.15.5e-15397.07RNA-binding protein 2-like isoform X2 [Benincasa hispida][more]
XP_038884977.13.0e-15189.14RNA-binding protein 2-like isoform X3 [Benincasa hispida][more]
XP_031743539.18.8e-15195.60RNA-binding protein 2 isoform X5 [Cucumis sativus][more]
XP_031743536.18.8e-15195.60RNA-binding protein 2 isoform X2 [Cucumis sativus][more]
XP_038884975.13.3e-15094.96RNA-binding protein 2-like isoform X1 [Benincasa hispida][more]
BLAST of ClCG08G006630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8H0P81.1e-8464.43RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1[more]
G7ID194.3e-8462.07RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1[more]
F4HWF97.2e-6351.94Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE... [more]
A1A6K69.7e-6053.78Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE... [more]
Q6JB117.5e-2864.77Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1[more]
BLAST of ClCG08G006630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCN53.3e-15165.12RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV... [more]
A0A1S3B4F03.6e-14296.11RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1[more]
A0A6J1CKA25.2e-14194.55RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 S... [more]
A0A6J1JXN99.5e-13591.05RNA-binding protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148977... [more]
A0A6J1FDW91.5e-13289.88RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444... [more]
BLAST of ClCG08G006630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G21320.21.6e-7054.17nucleotide binding;nucleic acid binding [more]
AT1G21320.15.1e-6451.94nucleotide binding;nucleic acid binding [more]
AT1G76940.16.9e-6153.78RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G76940.22.9e-4361.70RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G18670.12.4e-0540.52Leucine-rich repeat (LRR) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 159..235
e-value: 4.8E-5
score: 32.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 160..228
e-value: 4.8E-9
score: 35.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 158..244
score: 11.741675
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 154..245
e-value: 3.6E-18
score: 67.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 372..394
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 8..257
NoneNo IPR availablePANTHERPTHR10501:SF53NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATEDcoord: 8..257
NoneNo IPR availableCDDcd12420RRM_RBPMS_likecoord: 158..240
e-value: 2.069E-33
score: 117.756
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 133..255

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006630.1ClCG08G006630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding