ClCG08G005500 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGTGTCCTTTGGGCGGAAAAAGTTTGATCTGGTGACGGGATTGAAACACCAGACTAGACAGGTAGATAGGGATACTACCCATGTTAGACTAAGAAGAAAATATTTGAATGATGTAGAGGGGGTGAAAGGGTATGGACTAGATGCTAAGTGCCCTTCCTTGGAGTTTGAGGATGATGAAGATGTTGTCAAGATGTCCCTTTTTTATTTTATTGAGTTTGGACTCATGGGAAGGGCTAGAAAATCTAGCATGAACTTTCTATAACGTAGATTGGGGAAAATATATTTTCGATATGACAATGAGACATTTAAAGAAAGGCCTCCAAGACAAAGTTAATAACTGGCGTTTCAGGTTAGTTGTTATAGTTAGTTTCAATTATTGCTTTCCTCTTTAAATTATTACTTGTCTAACGAAATATATTTTATTTCATTTTATGTAGGTATGGGCATATGAGACCATTTCGTCCTTGACTGGACATGTTGCTAATCGGTTGAACAATGCCATACCACGCATTTGTTGTTGGTCTTGCTCACACTCACCTTCCTATGCTTTGATTAGGGATGAGGTGTTTGGTGTTGAAGAGGTATGCTCATTTCTAATGTTTTTTTTTCAATGATTATGGTATTTTTTTTACTTATAGATAATATTTGTTTATTAGGCCTTTATTACACTGGAGTTTATGGCAACAGAAGAGGAGATGGCATTCATGGATCGTGTTATGTTTCCATTGGAAGCATCGATCTTACCACCGATTCCCATGTTACCACTAGCACCATAG ATGAAAGTGTCCTTTGGGCGGAAAAAGTTTGATCTGGTGACGGGATTGAAACACCAGACTAGACAGGTATGGGCATATGAGACCATTTCGTCCTTGACTGGACATGTTGCTAATCGGTTGAACAATGCCATACCACGCATTTGTTGTTGGTCTTGCTCACACTCACCTTCCTATGCTTTGATTAGGGATGAGGTGTTTGGTGTTGAAGAGGCCTTTATTACACTGGAGTTTATGGCAACAGAAGAGGAGATGGCATTCATGGATCGTGTTATGTTTCCATTGGAAGCATCGATCTTACCACCGATTCCCATGTTACCACTAGCACCATAG ATGAAAGTGTCCTTTGGGCGGAAAAAGTTTGATCTGGTGACGGGATTGAAACACCAGACTAGACAGGTATGGGCATATGAGACCATTTCGTCCTTGACTGGACATGTTGCTAATCGGTTGAACAATGCCATACCACGCATTTGTTGTTGGTCTTGCTCACACTCACCTTCCTATGCTTTGATTAGGGATGAGGTGTTTGGTGTTGAAGAGGCCTTTATTACACTGGAGTTTATGGCAACAGAAGAGGAGATGGCATTCATGGATCGTGTTATGTTTCCATTGGAAGCATCGATCTTACCACCGATTCCCATGTTACCACTAGCACCATAG MKVSFGRKKFDLVTGLKHQTRQVWAYETISSLTGHVANRLNNAIPRICCWSCSHSPSYALIRDEVFGVEEAFITLEFMATEEEMAFMDRVMFPLEASILPPIPMLPLAP Homology
BLAST of ClCG08G005500 vs. NCBI nr
Match: XP_022154965.1 (uncharacterized protein LOC111022110 [Momordica charantia]) HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08 Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of ClCG08G005500 vs. NCBI nr
Match: XP_022136676.1 (uncharacterized protein LOC111008328 [Momordica charantia]) HSP 1 Score: 67.4 bits (163), Expect = 8.7e-08 Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0
BLAST of ClCG08G005500 vs. NCBI nr
Match: XP_022156879.1 (putative F-box protein At4g17565 [Momordica charantia]) HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06 Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of ClCG08G005500 vs. NCBI nr
Match: KGN49944.1 (hypothetical protein Csa_000148 [Cucumis sativus]) HSP 1 Score: 57.4 bits (137), Expect = 9.0e-05 Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0
BLAST of ClCG08G005500 vs. NCBI nr
Match: XP_031741885.1 (uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus]) HSP 1 Score: 57.4 bits (137), Expect = 9.0e-05 Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0
BLAST of ClCG08G005500 vs. ExPASy TrEMBL
Match: A0A6J1DL40 (uncharacterized protein LOC111022110 OS=Momordica charantia OX=3673 GN=LOC111022110 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08 Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of ClCG08G005500 vs. ExPASy TrEMBL
Match: A0A6J1C463 (uncharacterized protein LOC111008328 OS=Momordica charantia OX=3673 GN=LOC111008328 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08 Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0
BLAST of ClCG08G005500 vs. ExPASy TrEMBL
Match: A0A6J1DUW8 (putative F-box protein At4g17565 OS=Momordica charantia OX=3673 GN=LOC111023713 PE=4 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06 Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 0
BLAST of ClCG08G005500 vs. ExPASy TrEMBL
Match: A0A0A0KM59 (DUF1985 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G141180 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05 Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0
BLAST of ClCG08G005500 vs. ExPASy TrEMBL
Match: A0A6J1DRZ7 (uncharacterized protein LOC111023847 OS=Momordica charantia OX=3673 GN=LOC111023847 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 7.5e-05 Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|