ClCG08G005097 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G005097
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CG_Chr08: 16106739 .. 16107251 (+)
RNA-Seq Expression	ClCG08G005097
Synteny	ClCG08G005097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTGTTATCGATGCCAAAAACTTGGACATTTCCAATATGAATGTTCTGAAAATAAAGAAGCAAACTATTCTAAACGTGATGAGGAAGAAGAAACGCTTTTCATGTCTTATGTGGAAATGCATGGAGTCCAAAGAGAAGATACATGGTTTCTTGATTTCGAGTGTTCTAATCATATGTGTGGTGATCGATCAATGTTTAGTGAGCTCAATGAAGATTTCCGACATTCAATAAAATTGGAAAACACTAAAATGAATGTGATGGGCAAAGGAAATGTAAAGTTCCTGCTAAATGGAGTTAATCATGTTGTTGCTGAGGTATATTATATTCCAGATTTGAGTAGTAACCTATTGAGTATAGGGCAATTGCAAGAAAAAGACTTGTCTATTTTGATCAAGGCAGGGGAGTGCAAAATATTTCATCCAAAGAAGGGTTTGATTATTCAAACCAAAATGAGCAACAATAGAACTTTGCAAACTCAAAACTCAAATTTCTTCTCAAATGCAACATGA

mRNA sequence

ATGCAGTGTTATCGATGCCAAAAACTTGGACATTTCCAATATGAATGTTCTGAAAATAAAGAAGCAAACTATTCTAAACGTGATGAGGAAGAAGAAACGCTTTTCATGTCTTATGTGGAAATGCATGGAGTCCAAAGAGAAGATACATGGTTTCTTGATTTCGAGTGTTCTAATCATATGTGTGGTGATCGATCAATGTTTAGTGAGCTCAATGAAGATTTCCGACATTCAATAAAATTGGAAAACACTAAAATGAATGTGATGGGCAAAGGAAATGTAAAGTTCCTGCTAAATGGAGTTAATCATGTTGTTGCTGAGGTATATTATATTCCAGATTTGAGTAGTAACCTATTGAGTATAGGGCAATTGCAAGAAAAAGACTTGTCTATTTTGATCAAGGCAGGGGAGTGCAAAATATTTCATCCAAAGAAGGGTTTGATTATTCAAACCAAAATGAGCAACAATAGAACTTTGCAAACTCAAAACTCAAATTTCTTCTCAAATGCAACATGA

Coding sequence (CDS)

ATGCAGTGTTATCGATGCCAAAAACTTGGACATTTCCAATATGAATGTTCTGAAAATAAAGAAGCAAACTATTCTAAACGTGATGAGGAAGAAGAAACGCTTTTCATGTCTTATGTGGAAATGCATGGAGTCCAAAGAGAAGATACATGGTTTCTTGATTTCGAGTGTTCTAATCATATGTGTGGTGATCGATCAATGTTTAGTGAGCTCAATGAAGATTTCCGACATTCAATAAAATTGGAAAACACTAAAATGAATGTGATGGGCAAAGGAAATGTAAAGTTCCTGCTAAATGGAGTTAATCATGTTGTTGCTGAGGTATATTATATTCCAGATTTGAGTAGTAACCTATTGAGTATAGGGCAATTGCAAGAAAAAGACTTGTCTATTTTGATCAAGGCAGGGGAGTGCAAAATATTTCATCCAAAGAAGGGTTTGATTATTCAAACCAAAATGAGCAACAATAGAACTTTGCAAACTCAAAACTCAAATTTCTTCTCAAATGCAACATGA

Protein sequence

MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHMCGDRSMFSELNEDFRHSIKLENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLLSIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNRTLQTQNSNFFSNAT

Homology

[Close]

BLAST of ClCG08G005097 vs. NCBI nr
Match: XP_031737643.1 (uncharacterized protein LOC105435094 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 9.0e-68
Identity = 133/164 (81.10%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHM 60
           +QC+RCQK G+FQYECSENKEANY++ DEEEE   MSY E HGVQREDTW LDF CSNHM
Sbjct: 178 VQCFRCQKFGYFQYECSENKEANYAEFDEEEEMFLMSYEEKHGVQREDTWILDFGCSNHM 237

Query: 61  CGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLLS 120
           CGDRSMFS+LNEDFRHS+KL  NT+MNVMGKGNVK L+NGVNHVVAEVYYIPDLSSNLLS
Sbjct: 238 CGDRSMFSDLNEDFRHSVKLGNNTRMNVMGKGNVKLLINGVNHVVAEVYYIPDLSSNLLS 297

Query: 121 IGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ 162
           IGQLQEK +SILIK GECKIFHPK  LIIQ KMSN+R  TLQ Q
Sbjct: 298 IGQLQEKGMSILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQ 341

[Close]

BLAST of ClCG08G005097 vs. NCBI nr
Match: KAA8539565.1 (hypothetical protein F0562_026257 [Nyssa sinensis])

HSP 1 Score: 235.7 bits (600), Expect = 2.9e-58
Identity = 116/158 (73.42%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNH 60
           ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNH
Sbjct: 119 VECYRCHQLGHFRYECPSGNKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNH 178

Query: 61  MCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLL 120
           MCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+GVNHVVAEVYYIP+L +NLL
Sbjct: 179 MCGDRTMFNELDEKFRHSVKLGNNTKMDVMGKGTVKLLLDGVNHVVAEVYYIPELRNNLL 238

Query: 121 SIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR 157
           SIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Sbjct: 239 SIGQLQERGLAILIKGGVCKIFHPEKGLIIQTNMSANR 276

[Close]

BLAST of ClCG08G005097 vs. NCBI nr
Match: KAA8527475.1 (hypothetical protein F0562_034810 [Nyssa sinensis])

HSP 1 Score: 235.7 bits (600), Expect = 2.9e-58
Identity = 116/158 (73.42%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNH 60
           ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNH
Sbjct: 237 VECYRCHQLGHFRYECPSGNKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNH 296

Query: 61  MCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLL 120
           MCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+GVNHVVAEVYYIP+L +NLL
Sbjct: 297 MCGDRTMFNELDEKFRHSVKLGNNTKMDVMGKGTVKLLLDGVNHVVAEVYYIPELRNNLL 356

Query: 121 SIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR 157
           SIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Sbjct: 357 SIGQLQERGLAILIKGGVCKIFHPEKGLIIQTNMSANR 394

[Close]

BLAST of ClCG08G005097 vs. NCBI nr
Match: MCH87416.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 235.3 bits (599), Expect = 3.8e-58
Identity = 116/164 (70.73%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHM 60
           M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHM
Sbjct: 182 MECYQCHKLGHFRYECPDNREANYVEND-EEELLLMSFVELYDAKREDAWFLDSGCSNHM 241

Query: 61  CGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLLS 120
           CGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG N +V EVYYIP+L +NLLS
Sbjct: 242 CGDRTMFSELDENFRHSVKLGNNTKMNVVGKGSVKFLLNGTNFIVTEVYYIPELRNNLLS 301

Query: 121 IGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ 162
           IGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Sbjct: 302 IGQLQEKGLAILIKGGMCKIFHPEKGLIIQTNMSTNRMFTLRSQ 344

[Close]

BLAST of ClCG08G005097 vs. NCBI nr
Match: PNX96091.1 (retrotransposon-related protein [Trifolium pratense])

HSP 1 Score: 235.3 bits (599), Expect = 3.8e-58
Identity = 116/164 (70.73%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHM 60
           M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHM
Sbjct: 244 MECYQCHKLGHFRYECPDNREANYVEND-EEELLLMSFVELYDAKREDAWFLDSGCSNHM 303

Query: 61  CGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLLS 120
           CGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG N +V EVYYIP+L +NLLS
Sbjct: 304 CGDRTMFSELDENFRHSVKLGNNTKMNVVGKGSVKFLLNGTNFIVTEVYYIPELRNNLLS 363

Query: 121 IGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ 162
           IGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Sbjct: 364 IGQLQEKGLAILIKGGMCKIFHPEKGLIIQTNMSTNRMFTLRSQ 406

[Close]

BLAST of ClCG08G005097 vs. ExPASy TrEMBL
Match: A0A2N9H9R9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.3e-60
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNH 60
           ++CYRC +LGHF+YEC SENKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNH
Sbjct: 242 VECYRCHQLGHFRYECPSENKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNH 301

Query: 61  MCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLL 120
           MCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG+VK LLNGVNHVVAEVYYIP+L +NLL
Sbjct: 302 MCGDRTMFNELDEKFRHSVKLGNNTKMDVMGKGSVKLLLNGVNHVVAEVYYIPELRNNLL 361

Query: 121 SIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR 157
           SIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Sbjct: 362 SIGQLQERGLAILIKGGMCKIFHPEKGLIIQTNMSANR 399

[Close]

BLAST of ClCG08G005097 vs. ExPASy TrEMBL
Match: A0A5J5A8T6 (CCHC-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_034810 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 116/158 (73.42%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNH 60
           ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNH
Sbjct: 237 VECYRCHQLGHFRYECPSGNKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNH 296

Query: 61  MCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLL 120
           MCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+GVNHVVAEVYYIP+L +NLL
Sbjct: 297 MCGDRTMFNELDEKFRHSVKLGNNTKMDVMGKGTVKLLLDGVNHVVAEVYYIPELRNNLL 356

Query: 121 SIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR 157
           SIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Sbjct: 357 SIGQLQERGLAILIKGGVCKIFHPEKGLIIQTNMSANR 394

[Close]

BLAST of ClCG08G005097 vs. ExPASy TrEMBL
Match: A0A5J5B8J4 (CCHC-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_026257 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 116/158 (73.42%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYEC-SENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNH 60
           ++CYRC +LGHF+YEC S NKEANY++ DEEEE L MSYVE++  +RED WFLD  CSNH
Sbjct: 119 VECYRCHQLGHFRYECPSGNKEANYAELDEEEEMLLMSYVELYKARREDAWFLDSGCSNH 178

Query: 61  MCGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLL 120
           MCGDR+MF+EL+E FRHS+KL  NTKM+VMGKG VK LL+GVNHVVAEVYYIP+L +NLL
Sbjct: 179 MCGDRTMFNELDEKFRHSVKLGNNTKMDVMGKGTVKLLLDGVNHVVAEVYYIPELRNNLL 238

Query: 121 SIGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR 157
           SIGQLQE+ L+ILIK G CKIFHP+KGLIIQT MS NR
Sbjct: 239 SIGQLQERGLAILIKGGVCKIFHPEKGLIIQTNMSANR 276

[Close]

BLAST of ClCG08G005097 vs. ExPASy TrEMBL
Match: A0A2K3MZ63 (Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58
Identity = 116/164 (70.73%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHM 60
           M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHM
Sbjct: 244 MECYQCHKLGHFRYECPDNREANYVEND-EEELLLMSFVELYDAKREDAWFLDSGCSNHM 303

Query: 61  CGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLLS 120
           CGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG N +V EVYYIP+L +NLLS
Sbjct: 304 CGDRTMFSELDENFRHSVKLGNNTKMNVVGKGSVKFLLNGTNFIVTEVYYIPELRNNLLS 363

Query: 121 IGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ 162
           IGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Sbjct: 364 IGQLQEKGLAILIKGGMCKIFHPEKGLIIQTNMSTNRMFTLRSQ 406

[Close]

BLAST of ClCG08G005097 vs. ExPASy TrEMBL
Match: A0A392MIS2 (CCHC-type domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0008286 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58
Identity = 116/164 (70.73%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 1   MQCYRCQKLGHFQYECSENKEANYSKRDEEEETLFMSYVEMHGVQREDTWFLDFECSNHM 60
           M+CY+C KLGHF+YEC +N+EANY + D EEE L MS+VE++  +RED WFLD  CSNHM
Sbjct: 182 MECYQCHKLGHFRYECPDNREANYVEND-EEELLLMSFVELYDAKREDAWFLDSGCSNHM 241

Query: 61  CGDRSMFSELNEDFRHSIKL-ENTKMNVMGKGNVKFLLNGVNHVVAEVYYIPDLSSNLLS 120
           CGDR+MFSEL+E+FRHS+KL  NTKMNV+GKG+VKFLLNG N +V EVYYIP+L +NLLS
Sbjct: 242 CGDRTMFSELDENFRHSVKLGNNTKMNVVGKGSVKFLLNGTNFIVTEVYYIPELRNNLLS 301

Query: 121 IGQLQEKDLSILIKAGECKIFHPKKGLIIQTKMSNNR--TLQTQ 162
           IGQLQEK L+ILIK G CKIFHP+KGLIIQT MS NR  TL++Q
Sbjct: 302 IGQLQEKGLAILIKGGMCKIFHPEKGLIIQTNMSTNRMFTLRSQ 344

The following BLAST results are available for this feature:

BLAST of ClCG08G005097 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737643.1	9.0e-68	81.10	uncharacterized protein LOC105435094 [Cucumis sativus]	[more]
KAA8539565.1	2.9e-58	73.42	hypothetical protein F0562_026257 [Nyssa sinensis]	[more]
KAA8527475.1	2.9e-58	73.42	hypothetical protein F0562_034810 [Nyssa sinensis]	[more]
MCH87416.1	3.8e-58	70.73	hypothetical protein [Trifolium medium]	[more]
PNX96091.1	3.8e-58	70.73	retrotransposon-related protein [Trifolium pratense]	[more]

BLAST of ClCG08G005097 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G005097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9H9R9	4.3e-60	74.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39009 PE=4 SV=1	[more]
A0A5J5A8T6	1.4e-58	73.42	CCHC-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_034810 ...	[more]
A0A5J5B8J4	1.4e-58	73.42	CCHC-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_026257 ...	[more]
A0A2K3MZ63	1.8e-58	70.73	Retrotransposon-related protein OS=Trifolium pratense OX=57577 GN=L195_g019292 P...	[more]
A0A392MIS2	1.8e-58	70.73	CCHC-type domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A...	[more]

BLAST of ClCG08G005097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 1..45 e-value: 1.7E-5 score: 27.1
None	No IPR available	PANTHER	PTHR34676:SF9	SUBFAMILY NOT NAMED	coord: 36..162
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 36..162
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 2..17 e-value: 8.6E-5 score: 22.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 3..18 score: 9.092303
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 2..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G005097.1	ClCG08G005097.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0015074	DNA integration
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0050826	response to freezing
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0019829	ATPase-coupled cation transmembrane transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0071949	FAD binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding