ClCG08G004910 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G004910
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr08: 15303768 .. 15304487 (+)
RNA-Seq ExpressionClCG08G004910
SyntenyClCG08G004910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCGATGTGGCCGTATCAAGCCAACTGCATCAATAGATAAAGGTTGCAAAAGACGAGGGTGATGCAGCTGCATTGTCTATCCAACATGGTGAGGGGAAAGCCTCTATGGTTGAAGAGGAGAAGGAGGAACTTGCTCCTCTTTTTGATTATGAGACAAGAGGGCAAACACCTAAAGAAAGTTCGTTGGAGTCCACATCAATTGGAGATGTGGAAGAGATTGAGGGACTCCCGAGGCCTAAAGCGGTGGCTCTAAAAAGAGTCACTAAATCTGCCTTTGCGGCTAAGAGGAAGGCGGATTCAAGCTCAACTATCCCAACTCAAAAAAGGGCAAGAGTATAGCGTGTGCAGCAGGTTGTGCTCTCCTCGTCTAGTGAATTTGAAGACGAAGGCAAGTTGGAGCAACGGAAGGAGGCCCTCAGGAGGAAGGAAATCTTTTATGAATGCGGATTCTCTGGGAGGAGTGACATCCTACCAAAATATGTGAGGCTCATTATTGAGCACTATAAGTGGGAAGCACTTGCCAGCCTACCTATGTGCACTAGCAACTCTTTGATTAGAGACTTCTACCTTGGGTTGCAACCTGAGAAGGACATCTCTATGTTCCGAGGAGTTCAAGTGGATTTCTCTGTTGGGGCCATCAACGAGGTGTATACGGTCCCTGATGAGGGAGGGGACGAGTGTAGAAGAAGAATGTACGCTCCCACAAAGGAGCAA

mRNA sequence

ATGGCTAGCGATGTGGCCGTTGCAAAAGACGAGGGTGATGCAGCTGCATTGTCTATCCAACATGGTGAGGGGAAAGCCTCTATGGTTGAAGAGGAGAAGGAGGAACTTGCTCCTCTTTTTGATTATGAGACAAGAGGGCAAACACCTAAAGAAAGTTCGTTGGAGTCCACATCAATTGGAGATGTGGAAGAGATTGAGGGACTCCCGAGGCCTAAAGCGGTGGCTCTAAAAAGAGTCACTAAATCTGCCTTTGCGGCTAAGAGGAAGGCGGATTCAAGCTCAACTATCCCAACTCAAAAAAGGGCAAGAGTTGTGCTCTCCTCGTCTAGTGAATTTGAAGACGAAGGCAAGTTGGAGCAACGGAAGGAGGCCCTCAGGAGGAAGGAAATCTTTTATGAATGCGGATTCTCTGGGAGGAGTGACATCCTACCAAAATATGTGAGGCTCATTATTGAGCACTATAAGTGGGAAGCACTTGCCAGCCTACCTATGTGCACTAGCAACTCTTTGATTAGAGACTTCTACCTTGGGTTGCAACCTGAGAAGGACATCTCTATGTTCCGAGGAGTTCAAGTGGATTTCTCTGTTGGGGCCATCAACGAGGTGTATACGGTCCCTGATGAGGGAGGGGACGAGTGTAGAAGAAGAATGTACGCTCCCACAAAGGAGCAA

Coding sequence (CDS)

ATGGCTAGCGATGTGGCCGTTGCAAAAGACGAGGGTGATGCAGCTGCATTGTCTATCCAACATGGTGAGGGGAAAGCCTCTATGGTTGAAGAGGAGAAGGAGGAACTTGCTCCTCTTTTTGATTATGAGACAAGAGGGCAAACACCTAAAGAAAGTTCGTTGGAGTCCACATCAATTGGAGATGTGGAAGAGATTGAGGGACTCCCGAGGCCTAAAGCGGTGGCTCTAAAAAGAGTCACTAAATCTGCCTTTGCGGCTAAGAGGAAGGCGGATTCAAGCTCAACTATCCCAACTCAAAAAAGGGCAAGAGTTGTGCTCTCCTCGTCTAGTGAATTTGAAGACGAAGGCAAGTTGGAGCAACGGAAGGAGGCCCTCAGGAGGAAGGAAATCTTTTATGAATGCGGATTCTCTGGGAGGAGTGACATCCTACCAAAATATGTGAGGCTCATTATTGAGCACTATAAGTGGGAAGCACTTGCCAGCCTACCTATGTGCACTAGCAACTCTTTGATTAGAGACTTCTACCTTGGGTTGCAACCTGAGAAGGACATCTCTATGTTCCGAGGAGTTCAAGTGGATTTCTCTGTTGGGGCCATCAACGAGGTGTATACGGTCCCTGATGAGGGAGGGGACGAGTGTAGAAGAAGAATGTACGCTCCCACAAAGGAGCAA

Protein sequence

MASDVAVAKDEGDAAALSIQHGEGKASMVEEEKEELAPLFDYETRGQTPKESSLESTSIGDVEEIEGLPRPKAVALKRVTKSAFAAKRKADSSSTIPTQKRARVVLSSSSEFEDEGKLEQRKEALRRKEIFYECGFSGRSDILPKYVRLIIEHYKWEALASLPMCTSNSLIRDFYLGLQPEKDISMFRGVQVDFSVGAINEVYTVPDEGGDECRRRMYAPTKEQ
Homology
[Close]
BLAST of ClCG08G004910 vs. NCBI nr
Match: OIT26658.1 (hypothetical protein A4A49_43574 [Nicotiana attenuata])

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-05
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 0 

Query: 136 FSGRSDILPKYVRLIIEHYKWEALASLPMCTSNSLIRDFYLGLQPEKDISMFRGVQVDFS 195
           F  +  I   ++  IIEH++W+  A  P      L+ +FY  L    ++S+ RGV VD+S
Sbjct: 27  FDPKDGIEDAFIHEIIEHHQWKDFAKQPGSFYVDLVTEFYNNLDKSTNVSIVRGVNVDYS 86

Query: 196 VGAINEVYTVPDEGGDECRRRMYAP 221
           +  IN+VY +PD      R  + +P
Sbjct: 87  LEKINKVYDLPDVDDKVTRAFLKSP 111

[Close]
BLAST of ClCG08G004910 vs. ExPASy TrEMBL
Match: A0A1J6K985 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_43574 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-05
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 0 

Query: 136 FSGRSDILPKYVRLIIEHYKWEALASLPMCTSNSLIRDFYLGLQPEKDISMFRGVQVDFS 195
           F  +  I   ++  IIEH++W+  A  P      L+ +FY  L    ++S+ RGV VD+S
Sbjct: 27  FDPKDGIEDAFIHEIIEHHQWKDFAKQPGSFYVDLVTEFYNNLDKSTNVSIVRGVNVDYS 86

Query: 196 VGAINEVYTVPDEGGDECRRRMYAP 221
           +  IN+VY +PD      R  + +P
Sbjct: 87  LEKINKVYDLPDVDDKVTRAFLKSP 111

The following BLAST results are available for this feature:
BLAST of ClCG08G004910 vs. NCBI nr
Match NameE-valueIdentityDescription
OIT26658.13.7e-0532.94hypothetical protein A4A49_43574 [Nicotiana attenuata][more]
BLAST of ClCG08G004910 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G004910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J6K9851.8e-0532.94Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_43574 PE=4 SV=1[more]
BLAST of ClCG08G004910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G004910.1ClCG08G004910.1mRNA