ClCG08G004590 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G004590
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr08: 14550756 .. 14555396 (+)
RNA-Seq ExpressionClCG08G004590
SyntenyClCG08G004590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCTATGAAGCACAAATACGTTAGGGATAGAACTTGATATGTATTTGTCCAGATATGCCTTGGATATATGTTTGATACGTGATTTTGTGTATCTTTTTTGCTATACCGACAGTTTTTCAGCTGACACAACAAAAAATGTTGGCAGATCTGATTTTTGTCGACGCATTTACCACGCATGGGCACATTCTCATTTTTTGAATAGAAAAAAACATATTATTGATGTCACACCCCCTCCCAGATTACCCTACTCAACCCGAGAGGAGATGTGAGGACAGCAAACATCACCCCTCTTGTGATGTATACTGTCCATCTGTACCTAATTAACCTGTTAAATTATTTCATACATATCTACTCATAGATTCAAAGCCATAAGAACTCATGTTTAAATAATTAAACATTCCAACATGTTCACCATATACTTATACAACAACCCATCTCACATCCAAACATATATATAACTAGGTCTACATGCCACCTATATAAGGTTATTTACACATACAACAACCACAATGTGAACTATTTCTGATAACTCGAAGCTTAACCAAGGCGAGCTAGAGTATGCTAAGCACCGGGAACGTCCTCGTTACTTGGGTGAAAAAGAAAACATGGAAAACATGAGCTAAAAGCCCCGTGAGTGACTAGTTTTATAAAACTGTCTTTGGTTTAGAAACCAACATGGGAAAACCGTTATCACAATACGTATAAAATGTGGATTCAAATCATAATTATTGGAAAAACATGCTTATATGCCTTTGCCAAATCATACATTATCATTTCAGAAAAATTATATAGAAATCCAGATTAATTTTACAAACTTTTTCCTTAATTGAGGCGGAGTAAGACTCAACGCTCTCAACGTCGAAAACAACCTTAGTTGGGGTGGAGCAAGACTCAACACACCCAACATCGAAAATGAATACTTTCCTTAGTTGAGGCGGAGCAAAACTCAACGCACCCAACGTCGAAAACGAATATTTACCTTAGTCAAGGCGGAGCAAAACTCAACGCACCCAACGTCGAAAACGAATATTTACCTTAGTCGAGGCGAAGCAAAACTCAACGCACCCAACGTCAAAAACGAATATTTACCTTAGTTGAGGCGGAGCAAAACTCAACGCACCCGATGTCAAAAACCTCTATGTGCACATACGAATATCTTGGGATGCTCAAGTACCTTCTCCGAGTCCATCAGTACTGGGTCCCTAGTCACAGGGTTGTCCACATGCCTTCTCAAATGTCCCTCAGCATTGGGTCCCTTAGAAAACATTTTAGAAGTAGGTATGTTTCGCATAAACAATTCATTGTAAACACCTTTCATGGAAAATAAAGCGATTTTCGATAAATAGCATCTTATAAACATGTTTTTCAACAACTCTTAGAAAACAGATAAAACATGCCTTCATGTCATAAAATCAAGTATACGCAGCCATCATGCTTTTCGAAATATCATAAAATCACATTTAATAAGAAAGTCTGCCTTACAATCAATACAATCATTTATCATGCTTTTCAAATCATCATAAGAAAACCGAACTACACATTCTCAATAAAATCATTTTTAAAGAAAGAAAAGTGTCACTCACTACTTGTCCTGGGCCCTGAGCAGATTATACGCCATTCCTAGCTTTTCTTGGCCTGTAAATTCACATTTCTCGTGTTAGGCTTTCCTAAACTTCCTTTCCATATTCATTAAATTGGCATAATTAAACTCCAAGCATGCTTCATCACCGAGACTCACTTCTCCCAAAATAATTCATAATGAGCGAGATTACTAGCGAGATTGGCCTAAAAATGTTCAACACTAGTGCGACCATAATGAGCGAGACTGGCAAGATTCACCTTGAGTAACGATACCTAGCGACACTCGTCTCGCTACTCACTCTTCAACTTCTCAGCAACACTGCAATACCAGCGACACCCGACAGCCACAGTTTCTTCCTTTCCTTTTGTTCTCACTTCTACCAGATAAAAATCACATTTCCAGCCAAATTCAGAACTTCTTTCCTTCTACAAACTTGTAAAGGAGTAGGTTCTCTAACTTGCCTCGAAATTTCAGAGCATAATTCTTCTCCGTTTGAGAGATATTTTCAAATAACACTGAGTTGCTCTGGAAAGTGTTTAAAATGATTAAATATTTAGCCCACTCATATATATATGCTGCCGACTTAACCTCCACTTCCATTCCTTTTTAAAATAGGTTGGCCGACGTAGACTTTTTCACCAACACACCAACGCATAGCCACCCTCAACGCAACCTACCTCCAACGCCCATAGCAGCCATCCACACACACAACTGCCTTCAACGCATGGCAACAACCTTCAATGCATAGCTGCAGTCCATCGCATACAGCTACTCTCCAATGCATAGTAAGCTTATCAACGCATGGTAGGTCAAGTACAACTTCTCCCGCCCAAGTTCCAACTTCACTTCCAACTCGTGTGACACCTTCAGCGCATGGTGACACCTTTAGTGCATGGTGACACCTCATGGTGACACCTTCAACGCATAGTAACCTTATCAAAATATAACAACTCTTCAGCCTTACCAACGCATAGTCGTGGCCAACACTTAACAATTTTTGCTCCTTCACTCTCAGCCACCACTCCTTTTTTCAACGCATAACACATGACTTCTTCTTAGCTTGCCTTCTCCCAAGGCTAAGCATGTCTTACAAGTTAGGGCTTACAGTTGATCTTCCTTACATAAACGATTTTAATGATTCTCAAACAAAGACAAGGCCTATTTAAATGAATTCTGATTTACTAACATATTGTAAAAAAGAAACATAGGAACTGCTTGATGAAAAGTTAATTAGACCTTCAAAAAGTCCTTGGAGTTGCACAGCTTTTTACGTGAAAAACGCAGCTGAACAACAGCGTGGTGCGCCAAAGTTAGTAATCAATTATAAACCTTTGAACAAAAAGTTTTGGAATAGATTAAATACCCAATTCCAAATAAACTAGATTTATTAAAACGGATTTCAAATGCAAAATTATTTTCAAAATTTGACATGAAGTCGGGTTTCTGGTAAATTCAAATTTTTGAAAAAGATAAGTACAAAACTGCTTTTAATGAGTTTGGACAACACGAATAGAATGTTATGCCCCTTTAGAATCTCAAAAACCATGAATGACATTTTCAATAATTTTCAAGATTTTACAATTGCTTATATAGATGACATTTTGGTGTTTTCCTCAAATTTAGACCAACACTTTAAACATCTTAACATTTTCATTGATATTTTCAAACAGAATGGTTTGGTAATATCCTTTCCAAAAGTAAAACTATTTCAAACCAAAATAAGATTTTTAGGCTTTGAGATTTATATGGGCCTCATAAAACCCATCTAGAGATTCATAGAGTTTGCATCAAACTTCCCCGACCAAATTCAAGATGAAACCTAATTATAAAGGTTCTTGGGCTATCTAAATTATGTGTCCAACTTTATACAAAATTTCAGACCCATTTGTAAACCACTTTTTCAAAGGCTAAAAAAGAATCCACAACCACAGTCCAATGAACATACCCAAGCTATTCAAAAAATTAAGGCTTTAGTCAAATCAATACCATGTCTAAGTCTAGTCAATCCAAAAGCAAATCTCATTATAGAGACAGATGCCTCTGACATAGGATATGGAGGAATCCTTAAATAGTGTCTAGATAAGATTGAGTCAATTGTCAAACTTCACTCAGGAATCTGGAACAATACTCAAAAGAATTACTCCACTGTAAAAAAAAAAAAAAATGCTTGCAATAGTTTTGTGTGTTCAAAAATTCCAAGAAGAATTAATTAACCAAAAATTTAATGTCAAAACTGATTCTATTGCTTCTGACGTCAAATTCTTATCTAAAAACAAATCTTTGCCAATTGGCAAGCGATTTTGCTTTGCTTCGACTTTGAGGTTTTGCCTATAAAAGGAGAATAAAACTCCTTAGCAAATGACCTCTCAAGGGAGTTCTTAACTCTTAAACTTCTCTCTCTCTCAAATCTCTTGTCTCCTTCTAAAAGCAAGAAAGAGGAGTGAAAGAAATAGGAAGGTCATATCTTCCTCTTCCTTTTTAAAGGGCAAACGCCCATCCTTTTCTTCCTCTACACCCGCTCTAATGAGCGTAGACCAATATGCGATGGATTTAGGGTTTACCACGATAACCCAGTCCAAAGCCCTCTCCTCTGGCATACAGGTTGGATCGTCAATGGAGTCATCTACTCTGCCACCAAGGCCTTTGGCCAAAGCTTCCACTAGTGATGTTAACCTTACCAATGAATCTTTGCAAATAGCAAAGATTAAGCACCAACTCCAGAACTGGGGACTACCCATGTTAAATACTAAAGAAATCTATACACATAACAACTTTAGCTTCAAAGAAAATTTATGTGTCAAGATTGATGAGTGAAAAATCCTAGTCCATGGGAGTATAGACTCAATCCAATTATTCCTAAAAGATGATATACTGAAATACAAGAAAGAGTTTGAGTTTCTTCACATAAGAGCAGTGCAGATAGCACTAAGACCTATGTTTAGATCAGGACTAGATAATCTTGTTCTTGCAATCCTCAAGGATAAGAGGCATAAAAACTTTGCAAATTCCCTCTTAAGAATTATCGAATCAAATCAGATAGGACAGAACCCTTGA

mRNA sequence

ATGTTGTCTATGAAGCACAAATACGGCAAACGCCCATCCTTTTCTTCCTCTACACCCGCTCTAATGAGCGTAGACCAATATGCGATGGATTTAGGGTTTACCACGATAACCCAGTCCAAAGCCCTCTCCTCTGGCATACAGGTTGGATCGTCAATGGAGTCATCTACTCTGCCACCAAGGCCTTTGGCCAAAGCTTCCACTAGTGATGTTAACCTTACCAATGAATCTTTGCAAATAGCAAAGATTAAGCACCAACTCCAGAACTGGGGACTACCCATAGCAGTGCAGATAGCACTAAGACCTATGTTTAGATCAGGACTAGATAATCTTGTTCTTGCAATCCTCAAGGATAAGAGGCATAAAAACTTTGCAAATTCCCTCTTAAGAATTATCGAATCAAATCAGATAGGACAGAACCCTTGA

Coding sequence (CDS)

ATGTTGTCTATGAAGCACAAATACGGCAAACGCCCATCCTTTTCTTCCTCTACACCCGCTCTAATGAGCGTAGACCAATATGCGATGGATTTAGGGTTTACCACGATAACCCAGTCCAAAGCCCTCTCCTCTGGCATACAGGTTGGATCGTCAATGGAGTCATCTACTCTGCCACCAAGGCCTTTGGCCAAAGCTTCCACTAGTGATGTTAACCTTACCAATGAATCTTTGCAAATAGCAAAGATTAAGCACCAACTCCAGAACTGGGGACTACCCATAGCAGTGCAGATAGCACTAAGACCTATGTTTAGATCAGGACTAGATAATCTTGTTCTTGCAATCCTCAAGGATAAGAGGCATAAAAACTTTGCAAATTCCCTCTTAAGAATTATCGAATCAAATCAGATAGGACAGAACCCTTGA

Protein sequence

MLSMKHKYGKRPSFSSSTPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLAKASTSDVNLTNESLQIAKIKHQLQNWGLPIAVQIALRPMFRSGLDNLVLAILKDKRHKNFANSLLRIIESNQIGQNP
Homology
[Close]
BLAST of ClCG08G004590 vs. NCBI nr
Match: KAA0053156.1 (hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 9  GKRPSFSSS-TPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLA 64
          G RPS SS+  P+ MSVDQYAM LGFTT+TQSK+ SSGI++GS  ES T PPRPLA
Sbjct: 19 GNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIGSPTESLT-PPRPLA 73

[Close]
BLAST of ClCG08G004590 vs. NCBI nr
Match: KAA0026180.1 (hypothetical protein E6C27_scaffold19G001410 [Cucumis melo var. makuwa] >TYK30779.1 hypothetical protein E5676_scaffold343G001290 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 9  GKRPSFSS-STPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLAKAS 67
          G  PS SS STP+ MS +QYAMDLGFTT+TQS++ SS IQ+GS  ESST PPRP A  S
Sbjct: 19 GNLPSSSSNSTPSPMSANQYAMDLGFTTVTQSRSRSSDIQIGSQTESST-PPRPWANLS 76

[Close]
BLAST of ClCG08G004590 vs. NCBI nr
Match: KAA0047770.1 (hypothetical protein E6C27_scaffold1059G00330 [Cucumis melo var. makuwa] >TYK02406.1 hypothetical protein E5676_scaffold155G001130 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 9  GKRPSFSS-STPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLA 64
          G  PSFSS S P+ MS DQYAMDLGFT +TQS++ SSGI +GS  ESST PPRP A
Sbjct: 19 GNLPSFSSNSAPSPMSADQYAMDLGFTMVTQSRSRSSGIWIGSPTESST-PPRPSA 73

[Close]
BLAST of ClCG08G004590 vs. NCBI nr
Match: KAA0049709.1 (hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-07
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 9  GKRPSFSS-STPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRP 62
          G RPS SS STP+ MS DQYAMDLGFTT+T+S++ SS I++GS  ESST PP+P
Sbjct: 19 GNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESST-PPKP 71

[Close]
BLAST of ClCG08G004590 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-06
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 0 

Query: 9  GKRPSFSS-STPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLAKAST 68
          G RPS SS S P+ MS DQYAMDLGFTT+T+S+A SS IQ+GS  +SST PPR     S 
Sbjct: 9  GNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSST-PPR----TSA 68

Query: 69 SDVNLTNESLQIAKIKHQLQN 89
          + +  ++E +Q+  +   L N
Sbjct: 69 NLIRPSSEVVQMRPLASPLSN 84

[Close]
BLAST of ClCG08G004590 vs. ExPASy TrEMBL
Match: A0A5A7UFZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 9  GKRPSFSSS-TPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLA 64
          G RPS SS+  P+ MSVDQYAM LGFTT+TQSK+ SSGI++GS  ES T PPRPLA
Sbjct: 19 GNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIGSPTESLT-PPRPLA 73

[Close]
BLAST of ClCG08G004590 vs. ExPASy TrEMBL
Match: A0A5D3E4M7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G001290 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 9  GKRPSFSS-STPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLAKAS 67
          G  PS SS STP+ MS +QYAMDLGFTT+TQS++ SS IQ+GS  ESST PPRP A  S
Sbjct: 19 GNLPSSSSNSTPSPMSANQYAMDLGFTTVTQSRSRSSDIQIGSQTESST-PPRPWANLS 76

[Close]
BLAST of ClCG08G004590 vs. ExPASy TrEMBL
Match: A0A5D3BW12 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001130 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 9  GKRPSFSS-STPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLA 64
          G  PSFSS S P+ MS DQYAMDLGFT +TQS++ SSGI +GS  ESST PPRP A
Sbjct: 19 GNLPSFSSNSAPSPMSADQYAMDLGFTMVTQSRSRSSGIWIGSPTESST-PPRPSA 73

[Close]
BLAST of ClCG08G004590 vs. ExPASy TrEMBL
Match: A0A5A7U8A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00530 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-07
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 9  GKRPSFSS-STPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRP 62
          G RPS SS STP+ MS DQYAMDLGFTT+T+S++ SS I++GS  ESST PP+P
Sbjct: 19 GNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESST-PPKP 71

[Close]
BLAST of ClCG08G004590 vs. ExPASy TrEMBL
Match: A0A5A7URX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00510 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.8e-07
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 9  GKRPSFSSS-TPALMSVDQYAMDLGFTTITQSKALSSGIQVGSSMESSTLPPRPLA 64
          G RPS SS+  P+ MS DQYAMDL FTTIT+S++ SSGI++GS  ESST PPRP A
Sbjct: 19 GNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIGSPTESST-PPRPSA 73

The following BLAST results are available for this feature:
BLAST of ClCG08G004590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053156.11.1e-0769.64hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa][more]
KAA0026180.11.9e-0766.10hypothetical protein E6C27_scaffold19G001410 [Cucumis melo var. makuwa] >TYK3077... [more]
KAA0047770.13.3e-0767.86hypothetical protein E6C27_scaffold1059G00330 [Cucumis melo var. makuwa] >TYK024... [more]
KAA0049709.14.3e-0766.67hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa][more]
KAE8646253.11.6e-0650.62hypothetical protein Csa_023844, partial [Cucumis sativus][more]
BLAST of ClCG08G004590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G004590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UFZ95.4e-0869.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E4M79.3e-0866.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BW121.6e-0767.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U8A02.1e-0766.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7URX07.8e-0766.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of ClCG08G004590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G004590.1ClCG08G004590.1mRNA