ClCG08G004545 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G004545
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase
Location	CG_Chr08: 14329106 .. 14330314 (-)
RNA-Seq Expression	ClCG08G004545
Synteny	ClCG08G004545

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGACGCGAAGTTTTATTATTGGGACGAGCCCCAGCTCTACAAAAGGGGGCCGGATCACATCTTCAGACTCTGCATCCCAGAGACTTCGTATCAACGCATCCTATCTCAATGTCATGACTCCCCCTATGAAGGGCATTTTGGAGGACAACGAACTGCAGCCAAGATATTGCAAAGCGGATACTTCTGGCCAACTCTTTTTAGAGATGCCAGGGACTATGCGATCAGATGCGACAGATGTCAACGCATCGGAAATATCTCAAGTCGGAACGAAATGCCACTTACCTCTATTTTAGAAGTCGAGCTCTTTGACGTTTGGGGTATTGATTTCATGGGCCCATTCCTGCCATCAAACGGCCACAACTACATACTGGTAGCGGTGGACTATGTATCAAAATGGGTTGAAGCAATCTCATGCGCCAGGAATGACGCGGTAACAGTCTCAAACTTTCTTCAGAAGAATATATTTACGAGATTCAGAACGCCGAGAGCCCTTATTAGCGATGAAGGTACGCATTTCATTAATAAAATCATTTCCAATTTGCTAATAAAATACAATGTACATCATAGGATGGCCACTGCATACCACCCATAGACAAATGGGCAGGCAGAAATTTCCAATAGAGAGTTGAAAACTATTTTGGAAAAAGTAGTTAACACCTCTCGAAAGGACTAGGTGTCCAAATTAAATGAGGCGTTATGGGCATACCGTACAACATTCAAAACGCCTATCGGGATGTCACCGTATGCGCTGGTCTTTGGAAAGGCATGCCATCTGCCGCTAGAGCTAGAACATAAAGCATTGTGGGCTGCCAAGAGATTGAACATGGACCTGAAAGCAGCTGGAGAAGCGCGTCAACTTCAATTGAATGAACTGGAGGAATAGAGACTGCAAGCCTATGAGAACGCAAAGATATACAAGGAGCGAACAAAGTGTTGGCACGACCAACGCATCAGTAAGAAATCTTTGTATGTAGGTCAAAAGGTCCTCCTTTTTAACTCAAGACTGCGTTTATTTCCAGGGAAATTAAAAACAAGATGGTCTGGTCCTTTTGTGATCAAGGAAATCTTTCCTCATGGTGCCGTAGAATGGATGAATGAAGATGACACCAACGCATTCAAAGTTAATGGTCAGCGTGTGAAACCATATTTTGGAGAATGCATTGAACACGACAAAGTAGCGGTTGACCTAGCAAAAATCGAATGA

mRNA sequence

ATGCATGACGCGAAGTTTTATTATTGGGACGAGCCCCAGCTCTACAAAAGGGGGCCGGATCACATCTTCAGACTCTGCATCCCAGAGACTTCGTATCAACGCATCCTATCTCAATGTCATGACTCCCCCTATGAAGGGCATTTTGGAGGACAACGAACTGCAGCCAAGATATTGCAAAGCGGATACTTCTGGCCAACTCTTTTTAGAGATGCCAGGGACTATGCGATCAGATGCGACAGATGTCAACGCATCGGAAATATCTCAAGTCGGAACGAAATGCCACTTACCTCTATTTTAGAAGTCGAGCTCTTTGACGTTTGGGGTATTGATTTCATGGGCCCATTCCTGCCATCAAACGGCCACAACTACATACTGGTAGCGGTGGACTATGTATCAAAATGGGTTGAAGCAATCTCATGCGCCAGGAATGACGCGGTAACAGTCTCAAACTTTCTTCAGAAGAATATATTTACGAGATTCAGAACGCCGAGAGCCCTTATTAGCGATGAAGGGAAATTAAAAACAAGATGGTCTGGTCCTTTTGTGATCAAGGAAATCTTTCCTCATGGTGCCGTAGAATGGATGAATGAAGATGACACCAACGCATTCAAAGTTAATGGTCAGCGTGTGAAACCATATTTTGGAGAATGCATTGAACACGACAAAGTAGCGGTTGACCTAGCAAAAATCGAATGA

Coding sequence (CDS)

ATGCATGACGCGAAGTTTTATTATTGGGACGAGCCCCAGCTCTACAAAAGGGGGCCGGATCACATCTTCAGACTCTGCATCCCAGAGACTTCGTATCAACGCATCCTATCTCAATGTCATGACTCCCCCTATGAAGGGCATTTTGGAGGACAACGAACTGCAGCCAAGATATTGCAAAGCGGATACTTCTGGCCAACTCTTTTTAGAGATGCCAGGGACTATGCGATCAGATGCGACAGATGTCAACGCATCGGAAATATCTCAAGTCGGAACGAAATGCCACTTACCTCTATTTTAGAAGTCGAGCTCTTTGACGTTTGGGGTATTGATTTCATGGGCCCATTCCTGCCATCAAACGGCCACAACTACATACTGGTAGCGGTGGACTATGTATCAAAATGGGTTGAAGCAATCTCATGCGCCAGGAATGACGCGGTAACAGTCTCAAACTTTCTTCAGAAGAATATATTTACGAGATTCAGAACGCCGAGAGCCCTTATTAGCGATGAAGGGAAATTAAAAACAAGATGGTCTGGTCCTTTTGTGATCAAGGAAATCTTTCCTCATGGTGCCGTAGAATGGATGAATGAAGATGACACCAACGCATTCAAAGTTAATGGTCAGCGTGTGAAACCATATTTTGGAGAATGCATTGAACACGACAAAGTAGCGGTTGACCTAGCAAAAATCGAATGA

Protein sequence

MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQSGYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNGHNYILVAVDYVSKWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEGKLKTRWSGPFVIKEIFPHGAVEWMNEDDTNAFKVNGQRVKPYFGECIEHDKVAVDLAKIE

Homology

[Close]

BLAST of ClCG08G004545 vs. NCBI nr
Match: WP_217833161.1 (DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 285.4 bits (729), Expect = 4.3e-73
Identity = 127/170 (74.71%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 2   HDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQSG 61
           H++KFY WDEP LY+ G DHI R C+PE     IL  CH++PY GHFGGQRTAAK+LQSG
Sbjct: 58  HESKFYCWDEPYLYRLGLDHILRRCVPEYETHSILKSCHEAPYGGHFGGQRTAAKVLQSG 117

Query: 62  YFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNGH 121
           YFWPTLF+DAR YA+ CDRCQR GNIS+RNEMPL S+LEVELFDVWGIDFMGPF PS G+
Sbjct: 118 YFWPTLFKDARAYAVACDRCQRTGNISNRNEMPLNSMLEVELFDVWGIDFMGPFPPSCGN 177

Query: 122 NYILVAVDYVSKWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG 172
            YILVAVDYVSKWVEA +CA+NDA TVS FL+K IF+RF TPRA+ISDEG
Sbjct: 178 QYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAIISDEG 227

[Close]

BLAST of ClCG08G004545 vs. NCBI nr
Match: PIN21773.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 278.5 bits (711), Expect = 5.3e-71
Identity = 138/266 (51.88%), Postives = 165/266 (62.03%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            + D + Y+WD+P L+K+GPD+I R C+PE     IL QCH SPY GHF G RTAAKILQS
Sbjct: 1026 LFDTRRYFWDDPFLFKQGPDNILRRCVPEIEMNDILEQCHASPYGGHFHGDRTAAKILQS 1085

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G+FWP LF+DA  +   CDRCQR GNIS R+EMPL +ILEVELFDVWGIDFMGPF+PS G
Sbjct: 1086 GFFWPNLFKDAHSFFANCDRCQRTGNISRRHEMPLNTILEVELFDVWGIDFMGPFVPSFG 1145

Query: 121  HNYILVAVDYVSKWVEAISCARNDAVTVS----NFLQKNIFTRFRT---PRALISDE--- 180
            + YILVAVDYVSKWVEA +   ND+  V+      LQ N    FR      A I  E   
Sbjct: 1146 NMYILVAVDYVSKWVEAAAVPNNDSKVVAAGEKRLLQLNELDEFRLHAYENAKIYKEKTK 1205

Query: 181  -----------------------------GKLKTRWSGPFVIKEIFPHGAVEWMNEDDTN 228
                                         GKLK+RWSGPF I E+FPHGAVE  NE+  N
Sbjct: 1206 RWHDKKIVERRFEPGQYVLLFNSRLKLFPGKLKSRWSGPFRITEVFPHGAVELENENSRN 1265

[Close]

BLAST of ClCG08G004545 vs. NCBI nr
Match: PIN21854.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 264.2 bits (674), Expect = 1.0e-66
Identity = 138/342 (40.35%), Postives = 170/342 (49.71%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            + D + Y+WD+P L+K+GPD+I R C+PE     I  QCH SPY GHF   RTAAKILQS
Sbjct: 1274 LFDTRRYFWDDPFLFKQGPDNILRRCVPEIEMNDIFEQCHASPYGGHFHRDRTAAKILQS 1333

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G+FWP LF+D   +   CDRCQR GNIS R+EMPL +ILEVELFDVWGIDFMGPF+PS G
Sbjct: 1334 GFFWPNLFKDVHSFVTNCDRCQRTGNISRRHEMPLKTILEVELFDVWGIDFMGPFVPSFG 1393

Query: 121  HNYILVAVDYVSKWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG--------- 180
            + YILVAVDY+SKWVEA++   ND+  V NF++KNIFTRF TPRA+ISD G         
Sbjct: 1394 NMYILVAVDYMSKWVEAVAVPNNDSKVVVNFIKKNIFTRFGTPRAIISDGGTHFYNRSFE 1453

Query: 181  ------------------------------------------------------------ 228
                                                                        
Sbjct: 1454 ALLSKYGVKHKISTPYHPQTSGQVEVSNREIKRTLEKTVSSTRKDWSKRLDEALWAYRTA 1513

[Close]

BLAST of ClCG08G004545 vs. NCBI nr
Match: XP_042757945.1 (uncharacterized protein LOC111885853 [Lactuca sativa])

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-66
Identity = 118/212 (55.66%), Postives = 153/212 (72.17%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            M DAKFY+WDEP L++   D ++R CIPE   ++IL +CH+S Y GHF G++TA ++L S
Sbjct: 1353 MSDAKFYFWDEPYLFRLNVDKMWRRCIPEMEQKQILEKCHNSEYGGHFQGEKTAIRVLHS 1412

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G++WP+LF+DA ++  RCDRCQR GNI  R EMPL++I+EVELFDVWGIDFMGPF+PS+G
Sbjct: 1413 GFYWPSLFKDAYEFVKRCDRCQRTGNIGRRQEMPLSNIMEVELFDVWGIDFMGPFVPSDG 1472

Query: 121  HNYILVAVDYVSKWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG-KLKTRWSG 180
              YILVAVDYVSKWVEA++C RNDA TV NFL+K IF+RF TPRA+ISDEG     R  G
Sbjct: 1473 KMYILVAVDYVSKWVEAVACVRNDARTVINFLKKQIFSRFGTPRAIISDEGTHFCNRMLG 1532

Query: 181  PFVIKEIFPHGAVEWMNEDDTNAFKVNGQRVK 212
              + K    H      +       + N +++K
Sbjct: 1533 AILAKYQIKHRVATAYHPQTNGLAEANNKQLK 1564

[Close]

BLAST of ClCG08G004545 vs. NCBI nr
Match: XP_042757945.1 (uncharacterized protein LOC111885853 [Lactuca sativa])

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-08
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 171  GKLKTRWSGPFVIKEIFPHGAVEWMNEDDTNAFKVNGQRVKPYFGECIEHDKVAV 226
            GKLK+RWSGPF I  + P GA+E +NE D   F VNGQRVK YFGE  E + VAV
Sbjct: 1694 GKLKSRWSGPFRIARVCPGGALELINEKDGERFLVNGQRVKHYFGE--EKEDVAV 1746

HSP 2 Score: 260.4 bits (664), Expect = 1.5e-65
Identity = 139/303 (45.87%), Postives = 166/303 (54.79%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            + DA+ Y+WD+P L+K+GPD+I R C+PE     IL QCH SPY GHF G RTAAKILQS
Sbjct: 1248 LFDARRYFWDDPFLFKQGPDNILRRCVPEIEMNDILEQCHASPYGGHFHGDRTAAKILQS 1307

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G+FWP LF+DA  +   CDRCQR GNIS R+EMPL +ILEVELFDVW IDFMGPF+PS G
Sbjct: 1308 GFFWPNLFKDAHSFVANCDRCQRTGNISRRHEMPLNTILEVELFDVWSIDFMGPFVPSFG 1367

Query: 121  HNYILVAVDYVSKWVEAISCARNDA----------------------------------- 180
            + YILVAVDY+SKWVEA++   ND+                                   
Sbjct: 1368 NMYILVAVDYMSKWVEAVAVPNNDSKSIISDRGTHFCNRSFETLLSKYGVKHKIFTLYHP 1427

Query: 181  -----VTVSNFLQKNIF--TRFRTP--RALISDE-------------------------- 228
                 V VSN   K I   T   TP   A I  E                          
Sbjct: 1428 QTSGQVEVSNRKIKRILEKTVSSTPYENAKIYKEKTKRWHDKKIVERHFEPGQYVLLFNS 1487

[Close]

BLAST of ClCG08G004545 vs. ExPASy Swiss-Prot
Match: P92516 (Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana OX=3702 GN=AtMg00750 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-15
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 57  ILQSGYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFM 113
           +LQ+G++WPT F+DA  +   CD CQR GN + RNEMP   ILEVE+FDVWGI FM
Sbjct: 35  VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90

[Close]

BLAST of ClCG08G004545 vs. ExPASy Swiss-Prot
Match: P23074 (Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11
Identity = 50/167 (29.94%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 7   YYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQSGYFWPT 66
           Y  +E +L    P+ I R+  P+   ++I+S  H+     H G   T  K+  S Y+WP 
Sbjct: 780 YTLEENKLIVERPNGI-RIVPPKADREKIISTAHNI---AHTGRDATFLKV-SSKYWWPN 839

Query: 67  LFRDARDYAIRCDRCQRIGNISSRNEMP-LTSILEVELFDVWGIDFMGPFLPSNGHNYIL 126
           L +D      +C +C  + N ++    P L  +  ++ FD + ID++GP  PSNG+ ++L
Sbjct: 840 LRKDVVKSIRQCKQC-LVTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLPPSNGYLHVL 899

Query: 127 VAVDYVSKWVEAI-SCARNDAVTVSNFLQKNIFTRFRTPRALISDEG 172
           V VD ++ +V    + A + + TV      N+ T    P+ L SD+G
Sbjct: 900 VVVDSMTGFVWLYPTKAPSTSATVKAL---NMLTSIAIPKVLHSDQG 937

[Close]

BLAST of ClCG08G004545 vs. ExPASy Swiss-Prot
Match: Q87040 (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) OX=298339 GN=pol PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11
Identity = 48/168 (28.57%), Postives = 81/168 (48.21%), Query Frame = 0


Query: 7   YYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQSGYFWPT 66
           YY ++ ++    P+ + ++  P++  Q+I+ Q H+     H G + T  KI    Y+WP 
Sbjct: 781 YYLEDGKVKVSRPEGV-KIIPPQSDRQKIVLQAHNL---AHTGREATLLKIANL-YWWPN 840

Query: 67  LFRDARDYAIRCDRCQRIGNISSRNEMP-LTSILEVELFDVWGIDFMGPFLPSNGHNYIL 126
           + +D      RC +C  I N S++   P L      + FD + ID++GP  PS G+ Y+L
Sbjct: 841 MRKDVVKQLGRCKQC-LITNASNKTSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVL 900

Query: 127 VAVDYVS--KWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG 172
           V VD ++   W+         A   S     N+ T    P+ + SD+G
Sbjct: 901 VIVDGMTGFTWLYPTKAPSTSATVKS----LNVLTSIAIPKVIHSDQG 938

[Close]

BLAST of ClCG08G004545 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-11
Identity = 41/146 (28.08%), Postives = 74/146 (50.68%), Query Frame = 0


Query: 29   ETSYQRILSQCHDSPYE-GHFGGQRTAAKILQSGYFWPTLFRDARDYAIRCDRCQRIGNI 88
            E   + ILS  HD P + GH G  +T AK+ +  Y+W  + +  ++Y  +C +CQ+    
Sbjct: 890  EKEKEAILSTLHDDPIQGGHTGITKTLAKV-KRHYYWKNMSKYIKEYVRKCQKCQKAKTT 949

Query: 89   S-SRNEMPLTSILEVELFDVWGIDFMGPFLPS-NGHNYILVAVDYVSKWVEAISCARNDA 148
              ++  M +T   E   FD   +D +GP   S NG+ Y +  +  ++K++ AI  A   A
Sbjct: 950  KHTKTPMTITETPE-HAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSA 1009

Query: 149  VTVSNFLQKNIFTRFRTPRALISDEG 172
             TV+  + ++   ++   +  I+D G
Sbjct: 1010 KTVAKAIFESFILKYGPMKTFITDMG 1033

[Close]

BLAST of ClCG08G004545 vs. ExPASy Swiss-Prot
Match: P14350 (Pro-Pol polyprotein OS=Human spumaretrovirus OX=11963 GN=pol PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-10
Identity = 47/168 (27.98%), Postives = 81/168 (48.21%), Query Frame = 0


Query: 7   YYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQSGYFWPT 66
           Y+ ++ ++    P+ + ++  P++  Q+I+ Q H+     H G + T  KI    Y+WP 
Sbjct: 781 YFLEDGKVKVSRPEGV-KIIPPQSDRQKIVLQAHNL---AHTGREATLLKIANL-YWWPN 840

Query: 67  LFRDARDYAIRCDRCQRIGNISSRNEMP-LTSILEVELFDVWGIDFMGPFLPSNGHNYIL 126
           + +D      RC +C  I N S++   P L      + FD + ID++GP  PS G+ Y+L
Sbjct: 841 MRKDVVKQLGRCQQC-LITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVL 900

Query: 127 VAVDYVS--KWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG 172
           V VD ++   W+         A   S     N+ T    P+ + SD+G
Sbjct: 901 VVVDGMTGFTWLYPTKAPSTSATVKS----LNVLTSIAIPKVIHSDQG 938

[Close]

BLAST of ClCG08G004545 vs. ExPASy TrEMBL
Match: A0A2G9HWC5 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05521 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.6e-71
Identity = 138/266 (51.88%), Postives = 165/266 (62.03%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            + D + Y+WD+P L+K+GPD+I R C+PE     IL QCH SPY GHF G RTAAKILQS
Sbjct: 1026 LFDTRRYFWDDPFLFKQGPDNILRRCVPEIEMNDILEQCHASPYGGHFHGDRTAAKILQS 1085

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G+FWP LF+DA  +   CDRCQR GNIS R+EMPL +ILEVELFDVWGIDFMGPF+PS G
Sbjct: 1086 GFFWPNLFKDAHSFFANCDRCQRTGNISRRHEMPLNTILEVELFDVWGIDFMGPFVPSFG 1145

Query: 121  HNYILVAVDYVSKWVEAISCARNDAVTVS----NFLQKNIFTRFRT---PRALISDE--- 180
            + YILVAVDYVSKWVEA +   ND+  V+      LQ N    FR      A I  E   
Sbjct: 1146 NMYILVAVDYVSKWVEAAAVPNNDSKVVAAGEKRLLQLNELDEFRLHAYENAKIYKEKTK 1205

Query: 181  -----------------------------GKLKTRWSGPFVIKEIFPHGAVEWMNEDDTN 228
                                         GKLK+RWSGPF I E+FPHGAVE  NE+  N
Sbjct: 1206 RWHDKKIVERRFEPGQYVLLFNSRLKLFPGKLKSRWSGPFRITEVFPHGAVELENENSRN 1265

[Close]

BLAST of ClCG08G004545 vs. ExPASy TrEMBL
Match: A0A2G9HWF8 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05441 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 5.0e-67
Identity = 138/342 (40.35%), Postives = 170/342 (49.71%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            + D + Y+WD+P L+K+GPD+I R C+PE     I  QCH SPY GHF   RTAAKILQS
Sbjct: 1274 LFDTRRYFWDDPFLFKQGPDNILRRCVPEIEMNDIFEQCHASPYGGHFHRDRTAAKILQS 1333

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G+FWP LF+D   +   CDRCQR GNIS R+EMPL +ILEVELFDVWGIDFMGPF+PS G
Sbjct: 1334 GFFWPNLFKDVHSFVTNCDRCQRTGNISRRHEMPLKTILEVELFDVWGIDFMGPFVPSFG 1393

Query: 121  HNYILVAVDYVSKWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG--------- 180
            + YILVAVDY+SKWVEA++   ND+  V NF++KNIFTRF TPRA+ISD G         
Sbjct: 1394 NMYILVAVDYMSKWVEAVAVPNNDSKVVVNFIKKNIFTRFGTPRAIISDGGTHFYNRSFE 1453

Query: 181  ------------------------------------------------------------ 228
                                                                        
Sbjct: 1454 ALLSKYGVKHKISTPYHPQTSGQVEVSNREIKRTLEKTVSSTRKDWSKRLDEALWAYRTA 1513

[Close]

BLAST of ClCG08G004545 vs. ExPASy TrEMBL
Match: A0A2G9HK33 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09465 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 7.2e-66
Identity = 139/303 (45.87%), Postives = 166/303 (54.79%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            + DA+ Y+WD+P L+K+GPD+I R C+PE     IL QCH SPY GHF G RTAAKILQS
Sbjct: 1248 LFDARRYFWDDPFLFKQGPDNILRRCVPEIEMNDILEQCHASPYGGHFHGDRTAAKILQS 1307

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G+FWP LF+DA  +   CDRCQR GNIS R+EMPL +ILEVELFDVW IDFMGPF+PS G
Sbjct: 1308 GFFWPNLFKDAHSFVANCDRCQRTGNISRRHEMPLNTILEVELFDVWSIDFMGPFVPSFG 1367

Query: 121  HNYILVAVDYVSKWVEAISCARNDA----------------------------------- 180
            + YILVAVDY+SKWVEA++   ND+                                   
Sbjct: 1368 NMYILVAVDYMSKWVEAVAVPNNDSKSIISDRGTHFCNRSFETLLSKYGVKHKIFTLYHP 1427

Query: 181  -----VTVSNFLQKNIF--TRFRTP--RALISDE-------------------------- 228
                 V VSN   K I   T   TP   A I  E                          
Sbjct: 1428 QTSGQVEVSNRKIKRILEKTVSSTPYENAKIYKEKTKRWHDKKIVERHFEPGQYVLLFNS 1487

[Close]

BLAST of ClCG08G004545 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.6e-65
Identity = 115/171 (67.25%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 1    MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
            + D + Y+WD+P L+K+GPD+I R C+PE     IL QCH SPY GHF G RTAAKILQS
Sbjct: 1176 LFDTRRYFWDDPFLFKQGPDNILRRCVPEIEMNDILEQCHASPYGGHFHGDRTAAKILQS 1235

Query: 61   GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
            G+FWP LF+DA  +   CDRCQR GNIS R+EMPL +ILEVELFDVWGIDFMGPF+PS G
Sbjct: 1236 GFFWPNLFKDAHSFVANCDRCQRTGNISRRHEMPLNTILEVELFDVWGIDFMGPFIPSFG 1295

Query: 121  HNYILVAVDYVSKWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG 172
            + YILVAVDYVSKWVEA +   ND+  V NF++KNIFTRF TPRA+ISD G
Sbjct: 1296 NMYILVAVDYVSKWVEAAAVPNNDSKVVVNFIKKNIFTRFGTPRAIISDGG 1346

[Close]

BLAST of ClCG08G004545 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.6e-11
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 171  GKLKTRWSGPFVIKEIFPHGAVEWMNEDDTNAFKVNGQRVKPYFGECIEHDKVAVDL 228
            GKLK+RWSGPF I E+FPHGAVE  N++  N FKVN QR+K Y+GE ++    ++ L
Sbjct: 1517 GKLKSRWSGPFRITEVFPHGAVELENKNSRNRFKVNAQRIKHYWGEIVDRQHASITL 1573

HSP 2 Score: 258.1 bits (658), Expect = 3.6e-65
Identity = 117/171 (68.42%), Postives = 131/171 (76.61%), Query Frame = 0


Query: 1   MHDAKFYYWDEPQLYKRGPDHIFRLCIPETSYQRILSQCHDSPYEGHFGGQRTAAKILQS 60
           +HD KFY WDEP LYKRG D + R C+PE   +++L  CHDS Y GHF G RTAAK+LQS
Sbjct: 98  LHDCKFYVWDEPFLYKRGVDGLLRRCVPEDEQEKVLWHCHDSSYGGHFSGDRTAAKVLQS 157

Query: 61  GYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFMGPFLPSNG 120
           G FWPTLF+DA  Y  RCDRCQR GNIS RNEMP   +LEVE+FDVWGIDFMGPF  S  
Sbjct: 158 GLFWPTLFKDAFTYVKRCDRCQRTGNISKRNEMPQNPVLEVEIFDVWGIDFMGPFPSSYS 217

Query: 121 HNYILVAVDYVSKWVEAISCARNDAVTVSNFLQKNIFTRFRTPRALISDEG 172
             YILVAVDYVSKWVEAI+   NDA  V +FL+KNIF+RF  PRALISDEG
Sbjct: 218 KTYILVAVDYVSKWVEAIATQTNDAQVVVSFLKKNIFSRFGVPRALISDEG 268

[Close]

BLAST of ClCG08G004545 vs. TAIR 10
Match: ATMG00750.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-16
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 57  ILQSGYFWPTLFRDARDYAIRCDRCQRIGNISSRNEMPLTSILEVELFDVWGIDFM 113
           +LQ+G++WPT F+DA  +   CD CQR GN + RNEMP   ILEVE+FDVWGI FM
Sbjct: 35  VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90

The following BLAST results are available for this feature:

BLAST of ClCG08G004545 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833161.1	4.3e-73	74.71	DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]	[more]
PIN21773.1	5.3e-71	51.88	DNA-directed DNA polymerase [Handroanthus impetiginosus]	[more]
PIN21854.1	1.0e-66	40.35	DNA-directed DNA polymerase [Handroanthus impetiginosus]	[more]
XP_042757945.1	2.3e-66	55.66	uncharacterized protein LOC111885853 [Lactuca sativa]	[more]
XP_042757945.1	8.3e-08	61.82	uncharacterized protein LOC111885853 [Lactuca sativa]	[more]

BLAST of ClCG08G004545 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92516	4.3e-15	60.71	Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana OX=3702 ...	[more]
P23074	2.9e-11	29.94	Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3	[more]
Q87040	3.7e-11	28.57	Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) OX=298339 GN=pol ...	[more]
P10394	4.9e-11	28.08	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P14350	1.1e-10	27.98	Pro-Pol polyprotein OS=Human spumaretrovirus OX=11963 GN=pol PE=1 SV=2	[more]

BLAST of ClCG08G004545 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9HWC5	2.6e-71	51.88	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_055...	[more]
A0A2G9HWF8	5.0e-67	40.35	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05441 PE=...	[more]
A0A2G9HK33	7.2e-66	45.87	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09465 PE=...	[more]
A0A2G9FWY3	1.6e-65	67.25	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=...	[more]
A0A2G9FWY3	6.6e-11	56.14	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=...	[more]

Pages

BLAST of ClCG08G004545 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00750.1	3.0e-16	60.71	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 1..84 e-value: 1.5E-18 score: 68.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..171
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 2..171
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 100..195 e-value: 1.3E-19 score: 72.3
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 27..83 e-value: 2.5E-12 score: 46.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 90..231 score: 11.136284
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 103..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G004545.1	ClCG08G004545.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding