ClCG08G003520 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G003520
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CG_Chr08: 9424152 .. 9426850 (+)
RNA-Seq Expression	ClCG08G003520
Synteny	ClCG08G003520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGCCAATTCCTCCGCTAACAATGGTGCCCGAAATTTCAGTACCCCTCCACTCAATCAACTCCTAAATTAAATCACAACAATTAAGCTTGATCGAGGAAATTTTCTTATGTGGAAAAATTTGGCCCTACCAATCCTTCGGAGCTACTGATTGGAAGGCTACCTCTTTGGGCAAATTGAGTGCCCTCCTATGTTCGTGAATCCACCCGCCAGTGAAATCGGAGCCAAAGTTATGTCTGGAGCATCAAGCTCACAAGTTACTAGCAGCGAGCAACAGTCAGGGTTAAGTCAGACTATAAATCCCAAATATGAGGCTTGGCACTTGTCGTTGATCAACTACTACTTGGGTGGCTTTACAACTCCATGACACTAGAAATAGCCACTCAGGTAATGGGATATGAGAAACCGGAGGACCTTTTGGAAGCAATCCAGAAGTTGTTCGATGTTCAATCGAGAGCCGAAGAGGATTTTCTCAGGCAAACGTTCCAACATACCAGAAAAGGTAATCTTCTATGTTTGAATACCTACGGTTGATGAAAATGAATTTCGATAATCTAGGTCAAATGGGAAGTCATGTTCCCACAAGAGCACTTGTGTCTTAAGTCCTTTTAGGGCTTGTTGAAGATTATAATCCAGTAGTTGCTATACTACAAGGAAAACCTGAAATAACGTGGCTTGAGATGCAAACGAAGCTGTTGACCTATAAAAGACGACTGGACTACCAGAATGTTGTTTGTTCCAGCGGAGCCAGCAAAAATCCTACGGTGAACATGGGCAGTGGGAGAGGCACTAGTGGACAGCGATCCCAAAACATGAACTAAAACAATGGAGGGTGTACTTAGTTCAATGGGTAGCGTGGTGGATTCAATCCAAATGCAAGTAAAGGGGACGAGGAAATGGAAGAGAACATGGTGGAAATTGTCTAATTTGCCAAGTCTGTGGTAAGATGGGTCACATAGCCTTTGTTTGCTATCATAGATATGAAAAGGAATTTGTCCCCAACAACAATAGTAACAGAGGAACGAATGGGGGGAGCAACTCTACCACAACTAATAATGGCAAGAATGCTCCAACAACTATGATGGCTACACAAAATAGTAATCCTTTCATGACTAATACTGATGGTGTGCTCGACTCAAGCTGGTATGTAGATAGTGCTTCCAACCATGTTACAACCGAATACAATAACCTAAGCAATCTGATGGAGTATGGAGGTAATTAAATGGTAACTGTAGGTAATAGAGAACAATTACAAATAGACTCTGTTGGTAGCACTCTTTTGTCAAGTGGGAATTCTTTTCTTAAGCTTAAAAATATATTATATGTGCCTGATACTGCTCAAAATTAATTAGCGTGTCAAAGCTTGCTAAAGATAATCACGTTTACATTGAATTTCATGATAATTGTTGCCTTGTAAAGGACAAGGGTACAAGTCGAGTAATTTCGAAGGGAATTCTTAAGGATGGGTTGTACCAACTGGAAGATATTGCTGCTATCAAGAGTCTTGAAGTTGCTAAAGAGTCAAAGACGGTCATGAACATAAATAATAATAGTTTATTAGCATTGATTTTGTTTAACATTAGAGTTAACAATGCTGTTTCAAAAAATATCTAGCACTGTCGACTAGGTCATCCATCATCTAGAGTTTTTGAATTCATAGTCAAGAATCATGGTTTGCCAGTTAAAGATAATAAAATATCCAAAATTTGCTTATCCTGTCAATTGGGTAAATCTCACTCCCTCCCCTTCCCGAATTCTACTTCTCGAGCATCGAAACCGTTTGAATTGATCCATTCGGATGTTTGCGGCCCAACACCTTTGCTATCAACAGAAGGCTTTCATTATTACCTCTTATTTGTGGATGATTTCAGTAGATTTGTATGGCTCTATCCACTGTGATAGAAAAGTGATGCCCTCATAGCTTTCTAACATTTTTTGAATTTGATACAGAATCAGTTTAATTCTGGAATTAAAACTATACAAACAGACAATGGTGGAGAGTACATTAAAATTCATCAACTATGCTCTCAATTGGGTATTCAAACCCATATGTCATGCCCTCACACATCAGAACAAAATGGCCAAGCTAAGCGGAAACACAGACGTGTTGTTGAAATAGGCCTTACTCTACCATTGCAATTCTACTGGGATGCTTTTACCACAGCAACACAGTTGCTCAATTGGCGGCCAACTCTAGTCCTTGCAGGTAAGTTTCTAATGGAGGTTCTTTTAAATAAAAAATTAGATGTTCTATAAATAAGGGTCTGGTAGAAGAGGTTGGTGTGTGCAAATCACTTGGGCGAATTGTGATTTTCTTCAACCAAATTATCCTAAATTGAGTATAGTTTCACCGAGAGGGCTGCCGAAAGGAAACTCCATGACGAAGAACTCGAATTTCATCAAAAACTCGAGCTTGCTCCGGCTATCGGGTAAATTGAAGCAGATCGGGAAGATCTGAAGATATCTGGCAATCAAAAAATAATTAGAAGCTGGAATTTTGAGGTAAGCTATCCAAGACATTTATCTACAACTTTGTAAGAGAAAAGCAACTTTAATTGTTGCTAAAAATATTACTTTTGACAGCTAGAAGTAAGGGTAGTGTGATTAAGGCTGTCGGGTGAGTTTTGGAGTGGTTGTGTGTGCGGTGTGGCTTGGGCCGTGGCCGGAAGGAAGAACCATTTGAGGTTATTTTGA

mRNA sequence

ATGGCCAACGCCAATTCCTCCGCTAACAATGGTGCCCGAAATTTCAGCTACCTCTTTGGGCAAATTGAGTGCCCTCCTATGTTCGTGAATCCACCCGCCAGTGAAATCGGAGCCAAAGTTATGTCTGGAGCATCAAGCTCACAAGTTACTAGCAGCGAGCAACAGTCAGGGTTAAGCTTGGCACTTGTCGTTGATCAACTACTACTTGGGTGGCTTTACAACTCCATGACACTAGAAATAGCCACTCAGGTAATGGGATATGAGAAACCGGAGGACCTTTTGGAAGCAATCCAGAAGTTGTTCGATGTTCAATCGAGAGCCGAAGAGGATTTTCTCAGGCAAACGTTCCAACATACCAGAAAAGTCCTTTTAGGGCTTGTTGAAGATTATAATCCAGTAGTTGCTATACTACAAGGAAAACCTGAAATAACGTGGCTTGAGATGCAAACGAAGCTGTTGACCTATAAAAGACGACTGGACTACCAGAATGTTGTTTGTTCCAGCGGAGCCAGCAAAAATCCTACGCGTGGTGGATTCAATCCAAATGCAAGTAAAGGGGACGAGGAAATGGAAGAGAACATGATGGGTCACATAGCCTTTGTTTGCTATCATAGATATGAAAAGGAATTTGTCCCCAACAACAATAGTAACAGAGGAACGAATGGGGGGAGCAACTCTACCACAACTAATAATGGCAAGAATGCTCCAACAACTATGATGGCTACACAAAATAGTAATCCTTTCATGACTAATACTGATGGTGTGCTCGACTCAAGCTGGTATGTAGATAGTGCTTCCAACCATGTTACAACCGAATACAATAACCTAAGCAATCTGATGGAGTATGGAGATAATCACGTTTACATTGAATTTCATGATAATTGTTGCCTTGTAAAGGACAAGGGTACAAGTCGAGTAATTTCGAAGGGAATTCTTAAGGATGGGTTGTACCAACTGGAAGATATTGCTGCTATCAAGAGTCTTGAAGTTGCTAAAGAGTCAAAGACGAATCAGTTTAATTCTGGAATTAAAACTATACAAACAGACAATGGTGGAGAGTACATTAAAATTCATCAACTATGCTCTCAATTGGGTATTCAAACCCATATGTCATGCCCTCACACATCAGAACAAAATGGCCAAGCTAAGCGGAAACACAGACGTGTTGTTGAAATAGGCCTTACTCTACCATTGCAATTCTACTGGGATGCTTTTACCACAGCAACACAGTTGCTCAATTGGCGGCCAACTCTAGTCCTTGCAGGTAAGTTTCTAATGGAGAGGGCTGCCGAAAGGAAACTCCATGACGAAGAACTCGAATTTCATCAAAAACTCGAGCTTGCTCCGGCTATCGGGCTGTCGGGTGAGTTTTGGAGTGGTTGTGTGTGCGGTGTGGCTTGGGCCGTGGCCGGAAGGAAGAACCATTTGAGGTTATTTTGA

Coding sequence (CDS)

ATGGCCAACGCCAATTCCTCCGCTAACAATGGTGCCCGAAATTTCAGCTACCTCTTTGGGCAAATTGAGTGCCCTCCTATGTTCGTGAATCCACCCGCCAGTGAAATCGGAGCCAAAGTTATGTCTGGAGCATCAAGCTCACAAGTTACTAGCAGCGAGCAACAGTCAGGGTTAAGCTTGGCACTTGTCGTTGATCAACTACTACTTGGGTGGCTTTACAACTCCATGACACTAGAAATAGCCACTCAGGTAATGGGATATGAGAAACCGGAGGACCTTTTGGAAGCAATCCAGAAGTTGTTCGATGTTCAATCGAGAGCCGAAGAGGATTTTCTCAGGCAAACGTTCCAACATACCAGAAAAGTCCTTTTAGGGCTTGTTGAAGATTATAATCCAGTAGTTGCTATACTACAAGGAAAACCTGAAATAACGTGGCTTGAGATGCAAACGAAGCTGTTGACCTATAAAAGACGACTGGACTACCAGAATGTTGTTTGTTCCAGCGGAGCCAGCAAAAATCCTACGCGTGGTGGATTCAATCCAAATGCAAGTAAAGGGGACGAGGAAATGGAAGAGAACATGATGGGTCACATAGCCTTTGTTTGCTATCATAGATATGAAAAGGAATTTGTCCCCAACAACAATAGTAACAGAGGAACGAATGGGGGGAGCAACTCTACCACAACTAATAATGGCAAGAATGCTCCAACAACTATGATGGCTACACAAAATAGTAATCCTTTCATGACTAATACTGATGGTGTGCTCGACTCAAGCTGGTATGTAGATAGTGCTTCCAACCATGTTACAACCGAATACAATAACCTAAGCAATCTGATGGAGTATGGAGATAATCACGTTTACATTGAATTTCATGATAATTGTTGCCTTGTAAAGGACAAGGGTACAAGTCGAGTAATTTCGAAGGGAATTCTTAAGGATGGGTTGTACCAACTGGAAGATATTGCTGCTATCAAGAGTCTTGAAGTTGCTAAAGAGTCAAAGACGAATCAGTTTAATTCTGGAATTAAAACTATACAAACAGACAATGGTGGAGAGTACATTAAAATTCATCAACTATGCTCTCAATTGGGTATTCAAACCCATATGTCATGCCCTCACACATCAGAACAAAATGGCCAAGCTAAGCGGAAACACAGACGTGTTGTTGAAATAGGCCTTACTCTACCATTGCAATTCTACTGGGATGCTTTTACCACAGCAACACAGTTGCTCAATTGGCGGCCAACTCTAGTCCTTGCAGGTAAGTTTCTAATGGAGAGGGCTGCCGAAAGGAAACTCCATGACGAAGAACTCGAATTTCATCAAAAACTCGAGCTTGCTCCGGCTATCGGGCTGTCGGGTGAGTTTTGGAGTGGTTGTGTGTGCGGTGTGGCTTGGGCCGTGGCCGGAAGGAAGAACCATTTGAGGTTATTTTGA

Protein sequence

MANANSSANNGARNFSYLFGQIECPPMFVNPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLGWLYNSMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRKVLLGLVEDYNPVVAILQGKPEITWLEMQTKLLTYKRRLDYQNVVCSSGASKNPTRGGFNPNASKGDEEMEENMMGHIAFVCYHRYEKEFVPNNNSNRGTNGGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDSASNHVTTEYNNLSNLMEYGDNHVYIEFHDNCCLVKDKGTSRVISKGILKDGLYQLEDIAAIKSLEVAKESKTNQFNSGIKTIQTDNGGEYIKIHQLCSQLGIQTHMSCPHTSEQNGQAKRKHRRVVEIGLTLPLQFYWDAFTTATQLLNWRPTLVLAGKFLMERAAERKLHDEELEFHQKLELAPAIGLSGEFWSGCVCGVAWAVAGRKNHLRLF

Homology

[Close]

BLAST of ClCG08G003520 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 7.4e-51
Identity = 168/539 (31.17%), Postives = 246/539 (45.64%), Query Frame = 0


Query: 15  FSYLFGQIECPPMFVNPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLGWLYN 74
           F YL G   CPP  + P  +      + G++SSQ +S          +VVD+LLLGWLYN
Sbjct: 61  FDYLTGDKPCPPTHLVPTDTPTN---IEGSTSSQ-SSPTLNPTYEAWIVVDKLLLGWLYN 120

Query: 75  SMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRK------------- 134
           SM  ++A QVMG+    +L  A+Q+LF VQSRAE D+L+Q FQ T K             
Sbjct: 121 SMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMK 180

Query: 135 ---------------------VLLGLVEDYNPVVAILQGKPEITWLEMQTKLLTYKRRLD 194
                                VL GL E+YNP+V  +QGK  ++W EM  +LLTY++RL+
Sbjct: 181 SHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLE 240

Query: 195 YQNVVCSS---GASKNPTRGGFNPNASKGDEEMEENMMGHIAFVCYHR---YEKEFVPNN 254
           YQN + S      ++ P+    +  + + ++        H +    HR   Y++      
Sbjct: 241 YQNSLKSGIPINQTQTPSVNYVDGRSFQTNQRTNNGNNSHGSNT--HRGGGYQRGSFGQR 300

Query: 255 NSNRG--TNGGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDS-ASNHVTT 314
           N  RG       N T +N+G N    + A  +++  +T  + V+D SWY DS A++HVT 
Sbjct: 301 NRGRGPQPTQHKNFTPSNSGPN----VFAAHHTSTTVTTPETVIDPSWYADSGATSHVTA 360

Query: 315 EYNNLSNLMEYGDNHVYIEFHDNCCLVK-----------------------------DKG 374
             NN+   ++Y      I  + N   +                              DK 
Sbjct: 361 NPNNVEQKVDYSGTENVIVANGNKLSISHIGSTNIHASGGSLKLKDVLRVPDIAKNLDKA 420

Query: 375 TSRVISKGILKDGLYQLE-------------------DIAAIKSLEVAKESKTNQF---- 434
           + R + KG LKD LY+L+                    + ++ +  ++ E  T  F    
Sbjct: 421 SGRTLLKGTLKDNLYRLDRSHRSPPATPTLTAPLFAHTVVSLSNNTLSSEKPTPSFPFAE 480

[Close]

BLAST of ClCG08G003520 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-40
Identity = 134/378 (35.45%), Postives = 175/378 (46.30%), Query Frame = 0


Query: 17  YLFGQIECPPMFV------NPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLG 76
           +L  +  CP  FV      N   +E GA    GASSS +T           +  D LLLG
Sbjct: 59  HLTAETPCPSHFVLSASSSNTTVTEEGADATIGASSS-ITPRIVNPLFEQWVTTDLLLLG 118

Query: 77  WLYNSMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRKVLLGLVEDY 136
           WLYNSMT ++A Q+MG+   EDL +A Q  F VQSRAEEDFLRQ  Q TRK   GL E Y
Sbjct: 119 WLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---GLDEVY 178

Query: 137 NPVVAILQGKPEITWLEMQTKLLTYKRRLDYQNV-------VCSSGA------------- 196
           N V+ ++QGKP+I+WL+MQ+KLL +++RL +QN        +  S A             
Sbjct: 179 NLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQR 238

Query: 197 -SKNPTRGGFNPNASKGDEEMEEN--------MMGHIAFVCYHRYEKEFVPNNNSNRGTN 256
              N    G+N     G      N          GH A VCY+R+ KEF      NR  +
Sbjct: 239 NQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNRNEH 298

Query: 257 GGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDS-ASNHVTTEYNNLSNLM 306
             + S + N     P   ++TQN+ PF T  D V+D +WY+DS A+NHVT E +N++N  
Sbjct: 299 SSNGSVSPN-----PAVFVSTQNATPFAT-PDTVVDPNWYIDSGATNHVTRECSNMTNPT 358

[Close]

BLAST of ClCG08G003520 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-39
Identity = 130/342 (38.01%), Postives = 173/342 (50.58%), Query Frame = 0


Query: 17  YLFGQIECPPMFV------NPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLG 76
           +L  +  CP  FV      N   +E GA    GASSS +T           +  D LLLG
Sbjct: 59  HLTAETPCPSHFVLSASSSNTTVTEEGADATIGASSS-ITPRIVNPLFEQWVTTDLLLLG 118

Query: 77  WLYNSMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRKVLLGLVEDY 136
           WLYNSMT ++A Q+MG+   EDL +A Q  F VQSRAEEDFLRQ  Q TRK   GL E Y
Sbjct: 119 WLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---GLDEVY 178

Query: 137 NPVVAILQGKPEITWLEMQTKLLTYKRRLDYQNV-------VCSSGA------------- 196
           N V+ ++QGKP+I+WL+MQ+KLL +++RL +QN        +  S A             
Sbjct: 179 NLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQR 238

Query: 197 -SKNPTRGGFNPNASKGDEEMEEN--------MMGHIAFVCYHRYEKEFVPNNNSNRGTN 256
              N    G+N     G      N          GH A VCY+R+ KEF      NR  +
Sbjct: 239 NQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNRNEH 298

Query: 257 GGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDS-ASNHVTTEYNNLSNLM 316
             + S + N     P   ++TQN+ PF T  D V+D +WY+DS A+NHVT E +N++N  
Sbjct: 299 SSNGSVSPN-----PAVFVSTQNATPFAT-PDTVVDPNWYIDSGATNHVTRECSNMTNPT 358

Query: 317 EYGDNHVYIEFHDNCCLVKDKGTSRVISKGILKDGLYQLEDI 323
           EY    +Y E                + +G L+DG YQLE +
Sbjct: 359 EY-SGQIYGE---------------TLLRGTLRDGFYQLERV 374

[Close]

BLAST of ClCG08G003520 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 5.5e-38
Identity = 120/331 (36.25%), Postives = 168/331 (50.76%), Query Frame = 0


Query: 42  SGASSSQVTSSEQQSGLSLALVVDQLLLGWLYNSMTLEIATQVMGYEKPEDLLEAIQKLF 101
           SGASSS +T+ E        + VDQLLLGWLYNSMT E+A QVMG E  +DL  +I +LF
Sbjct: 31  SGASSS-LTALEVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIPQLF 90

Query: 102 DVQSRAEEDFLRQTFQHTRK----------------------------------VLLGLV 161
            VQSR EED+LR  FQ TRK                                  VLLGL 
Sbjct: 91  GVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQVLLGLD 150

Query: 162 EDYNPVVAILQGKPEITWLEMQTKLLTYKRRLDYQ---------NVVCSSGASKNPTR-- 221
           E+YN +VA++QG+ +++WL+MQ++LL Y+RRL++Q         N + ++  +   TR  
Sbjct: 151 EEYNAIVAMIQGRVDMSWLDMQSELLLYERRLEHQSNQKTTVGFNQISNASVNMTNTRHV 210

Query: 222 --------------------GGFNPNASKGDEEMEE-----NMMGHIAFVCYHRYEKEFV 281
                               GG      +G    +        +GHIAF C++RY ++FV
Sbjct: 211 NQNNKTNSSNQSIGGGQRGGGGHGRGRGRGRNNKKPVCQVCGKVGHIAFYCFNRYSRDFV 270

Query: 282 PNNNSNRGTNGGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDSASNHVTT 301
           PN+  N+     +N   T N +  PT +     SNPF+T  + + D++WY   ASNHVT+
Sbjct: 271 PNSPQNKVEPFPNNQ--TKNTQPHPTALAIAYGSNPFLTRQENMTDANWYDSGASNHVTS 330

[Close]

BLAST of ClCG08G003520 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-37
Identity = 115/311 (36.98%), Postives = 162/311 (52.09%), Query Frame = 0


Query: 42  SGASSSQVTSSEQQSGLSLALVVDQLLLGWLYNSMTLEIATQVMGYEKPEDLLEAIQKLF 101
           SGASSS +T+ E        + VDQLLLGWLYNSMT E+A QVMG E  +DL  +I +LF
Sbjct: 31  SGASSS-LTALEVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIPQLF 90

Query: 102 DVQSRAEEDFLRQTFQHTRK----------------------------------VLLGLV 161
            VQSR EED+LR  FQ TRK                                  VLLGL 
Sbjct: 91  GVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQVLLGLD 150

Query: 162 EDYNPVVAILQGKPEITWLEMQTKLLTYKRRLDYQ---------NVVCSSGASKNPTR-- 221
           E+YN +VA++QG+ +++WL+MQ++LL Y+RRL++Q         N + ++  +   TR  
Sbjct: 151 EEYNAIVAMIQGRVDMSWLDMQSELLLYERRLEHQSNQKTTVGFNQISNASVNMTNTRHV 210

Query: 222 --------------------GGFNPNASKGDEEMEE-----NMMGHIAFVCYHRYEKEFV 281
                               GG      +G    +        +GHIAF C++RY ++FV
Sbjct: 211 NQNNKTNSSNQSIGGGQRGGGGHGRGRGRGRNNKKPVCQVCGKVGHIAFYCFNRYSRDFV 270

Query: 282 PNNNSNRGTNGGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDSASNHVTT 283
           PN+  N+     +N   T N +  PT +     SNPF+T  + + D++WY   ASNHVT+
Sbjct: 271 PNSPQNKVEPFPNNQ--TKNTQPHPTALAIAYGSNPFLTRQENMTDANWYDSGASNHVTS 330

[Close]

BLAST of ClCG08G003520 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-12
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 316 LYQLEDIAAIK-SLEVAKESKTNQFNSGIKTIQTDNGGEYIKIHQLCSQLGIQTHMSCPH 375
           LY L+  + +K +  + K    N+F + I T+ +DNGGE++ +    SQ GI    S PH
Sbjct: 537 LYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPH 596

Query: 376 TSEQNGQAKRKHRRVVEIGLTL------PLQFYWDAFTTATQLLNWRPTLVL 421
           T E NG ++RKHR +VE+GLTL      P  ++  AF+ A  L+N  PT +L
Sbjct: 597 TPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLL 648

[Close]

BLAST of ClCG08G003520 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-12
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 316 LYQLEDIAAIKSLEVA-KESKTNQFNSGIKTIQTDNGGEYIKIHQLCSQLGIQTHMSCPH 375
           LY L+  + +K   +  K    N+F + I T  +DNGGE++ + +  SQ GI    S PH
Sbjct: 558 LYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPH 617

Query: 376 TSEQNGQAKRKHRRVVEIGLTL------PLQFYWDAFTTATQLLNWRPTLVL 421
           T E NG ++RKHR +VE GLTL      P  ++  AF  A  L+N  PT +L
Sbjct: 618 TPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLL 669

[Close]

BLAST of ClCG08G003520 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.6e-51
Identity = 168/539 (31.17%), Postives = 246/539 (45.64%), Query Frame = 0


Query: 15  FSYLFGQIECPPMFVNPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLGWLYN 74
           F YL G   CPP  + P  +      + G++SSQ +S          +VVD+LLLGWLYN
Sbjct: 61  FDYLTGDKPCPPTHLVPTDTPTN---IEGSTSSQ-SSPTLNPTYEAWIVVDKLLLGWLYN 120

Query: 75  SMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRK------------- 134
           SM  ++A QVMG+    +L  A+Q+LF VQSRAE D+L+Q FQ T K             
Sbjct: 121 SMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMK 180

Query: 135 ---------------------VLLGLVEDYNPVVAILQGKPEITWLEMQTKLLTYKRRLD 194
                                VL GL E+YNP+V  +QGK  ++W EM  +LLTY++RL+
Sbjct: 181 SHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLE 240

Query: 195 YQNVVCSS---GASKNPTRGGFNPNASKGDEEMEENMMGHIAFVCYHR---YEKEFVPNN 254
           YQN + S      ++ P+    +  + + ++        H +    HR   Y++      
Sbjct: 241 YQNSLKSGIPINQTQTPSVNYVDGRSFQTNQRTNNGNNSHGSNT--HRGGGYQRGSFGQR 300

Query: 255 NSNRG--TNGGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDS-ASNHVTT 314
           N  RG       N T +N+G N    + A  +++  +T  + V+D SWY DS A++HVT 
Sbjct: 301 NRGRGPQPTQHKNFTPSNSGPN----VFAAHHTSTTVTTPETVIDPSWYADSGATSHVTA 360

Query: 315 EYNNLSNLMEYGDNHVYIEFHDNCCLVK-----------------------------DKG 374
             NN+   ++Y      I  + N   +                              DK 
Sbjct: 361 NPNNVEQKVDYSGTENVIVANGNKLSISHIGSTNIHASGGSLKLKDVLRVPDIAKNLDKA 420

Query: 375 TSRVISKGILKDGLYQLE-------------------DIAAIKSLEVAKESKTNQF---- 434
           + R + KG LKD LY+L+                    + ++ +  ++ E  T  F    
Sbjct: 421 SGRTLLKGTLKDNLYRLDRSHRSPPATPTLTAPLFAHTVVSLSNNTLSSEKPTPSFPFAE 480

[Close]

BLAST of ClCG08G003520 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.5e-41
Identity = 134/378 (35.45%), Postives = 175/378 (46.30%), Query Frame = 0


Query: 17  YLFGQIECPPMFV------NPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLG 76
           +L  +  CP  FV      N   +E GA    GASSS +T           +  D LLLG
Sbjct: 59  HLTAETPCPSHFVLSASSSNTTVTEEGADATIGASSS-ITPRIVNPLFEQWVTTDLLLLG 118

Query: 77  WLYNSMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRKVLLGLVEDY 136
           WLYNSMT ++A Q+MG+   EDL +A Q  F VQSRAEEDFLRQ  Q TRK   GL E Y
Sbjct: 119 WLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---GLDEVY 178

Query: 137 NPVVAILQGKPEITWLEMQTKLLTYKRRLDYQNV-------VCSSGA------------- 196
           N V+ ++QGKP+I+WL+MQ+KLL +++RL +QN        +  S A             
Sbjct: 179 NLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQR 238

Query: 197 -SKNPTRGGFNPNASKGDEEMEEN--------MMGHIAFVCYHRYEKEFVPNNNSNRGTN 256
              N    G+N     G      N          GH A VCY+R+ KEF      NR  +
Sbjct: 239 NQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNRNEH 298

Query: 257 GGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDS-ASNHVTTEYNNLSNLM 306
             + S + N     P   ++TQN+ PF T  D V+D +WY+DS A+NHVT E +N++N  
Sbjct: 299 SSNGSVSPN-----PAVFVSTQNATPFAT-PDTVVDPNWYIDSGATNHVTRECSNMTNPT 358

[Close]

BLAST of ClCG08G003520 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-39
Identity = 130/342 (38.01%), Postives = 173/342 (50.58%), Query Frame = 0


Query: 17  YLFGQIECPPMFV------NPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLG 76
           +L  +  CP  FV      N   +E GA    GASSS +T           +  D LLLG
Sbjct: 59  HLTAETPCPSHFVLSASSSNTTVTEEGADATIGASSS-ITPRIVNPLFEQWVTTDLLLLG 118

Query: 77  WLYNSMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRKVLLGLVEDY 136
           WLYNSMT ++A Q+MG+   EDL +A Q  F VQSRAEEDFLRQ  Q TRK   GL E Y
Sbjct: 119 WLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRK---GLDEVY 178

Query: 137 NPVVAILQGKPEITWLEMQTKLLTYKRRLDYQNV-------VCSSGA------------- 196
           N V+ ++QGKP+I+WL+MQ+KLL +++RL +QN        +  S A             
Sbjct: 179 NLVIVVIQGKPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQR 238

Query: 197 -SKNPTRGGFNPNASKGDEEMEEN--------MMGHIAFVCYHRYEKEFVPNNNSNRGTN 256
              N    G+N     G      N          GH A VCY+R+ KEF      NR  +
Sbjct: 239 NQSNKKFYGYNRQHFSGQRGNLNNGPTCQLCGKYGHSALVCYNRFNKEFSSPLVQNRNEH 298

Query: 257 GGSNSTTTNNGKNAPTTMMATQNSNPFMTNTDGVLDSSWYVDS-ASNHVTTEYNNLSNLM 316
             + S + N     P   ++TQN+ PF T  D V+D +WY+DS A+NHVT E +N++N  
Sbjct: 299 SSNGSVSPN-----PAVFVSTQNATPFAT-PDTVVDPNWYIDSGATNHVTRECSNMTNPT 358

Query: 317 EYGDNHVYIEFHDNCCLVKDKGTSRVISKGILKDGLYQLEDI 323
           EY    +Y E                + +G L+DG YQLE +
Sbjct: 359 EY-SGQIYGE---------------TLLRGTLRDGFYQLERV 374

[Close]

BLAST of ClCG08G003520 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-37
Identity = 132/378 (34.92%), Postives = 176/378 (46.56%), Query Frame = 0


Query: 17  YLFGQIECPPMFV------NPPASEIGAKVMSGASSSQVTSSEQQSGLSLALVVDQLLLG 76
           +L G+  CP  FV      N   +E GA    GASSS +T     S     +  D LLLG
Sbjct: 59  HLTGETPCPSHFVLSASSSNTTVTEEGADATIGASSS-ITPRIVNSLFEQWVTTDLLLLG 118

Query: 77  WLYNSMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRK--------- 136
           WLYNSMT ++A Q+MG+   EDL +A Q  F VQSRAEEDFLRQ  Q TRK         
Sbjct: 119 WLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYL 178

Query: 137 -------------------------VLLGLVEDYNPVVAILQGKPEITWLEMQTKLLTYK 196
                                    VLLGL E YN V+ ++QGKP+I+WL+MQ+KLL ++
Sbjct: 179 LVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFE 238

Query: 197 RRLDYQNVVCSSGASKNPTRG-----------------------GFNPNASKGDEEMEEN 256
           + L +QN         N T+                        G+N     G      N
Sbjct: 239 KILKHQNTQKKKKKKGNITQSPALNMAQRFALNGQRNHSNKKFYGYNRQHFSGQRGNLNN 298

Query: 257 --------MMGHIAFVCYHRYEKEFVPNNNSNRGTNGGSNSTTTNNGKNAPTTMMATQNS 316
                     GH A VCY+R+ KEF      +R  +  + S + N     P   ++TQN+
Sbjct: 299 GPTCQLCGKYGHSALVCYNRFNKEFSSPLVQDRNEHSSNGSVSPN-----PAVFVSTQNA 358

Query: 317 NPFMTNTDGVLDSSWYVDS-ASNHVTTEYNNLSNLMEYGDNHVYIEFHDNCCLVKDKGTS 323
            PF T  D V+D +WY+DS A+NHVT E +N++N  EY    +Y E              
Sbjct: 359 TPFAT-PDTVVDPNWYIDSGATNHVTRECSNMTNPTEY-SGQIYGE-------------- 413

[Close]

BLAST of ClCG08G003520 vs. ExPASy TrEMBL
Match: A0A5D3CPY2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00160 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.8e-37
Identity = 112/288 (38.89%), Postives = 155/288 (53.82%), Query Frame = 0


Query: 65  DQLLLGWLYNSMTLEIATQVMGYEKPEDLLEAIQKLFDVQSRAEEDFLRQTFQHTRKVLL 124
           D LLLGW+YNSMT E+A Q+MG+   +DL EAIQ LF VQSR EEDFLR  FQ TRK   
Sbjct: 13  DLLLLGWIYNSMTAEVAFQLMGFNIAKDLWEAIQDLFGVQSRVEEDFLRHGFQTTRKG-N 72

Query: 125 GLVEDY-----NPVVAILQGKPEITWLEMQTKLLTYKRRLDYQNVVCSSGASKNPTRGGF 184
             +EDY       V  + Q KP+I+WL+MQ++LL +++RL++Q                 
Sbjct: 73  SKMEDYLRIMKTNVENLGQEKPDISWLDMQSELLIFEKRLEHQ----------------- 132

Query: 185 NPNASKGDEEMEENMMGHIAFVCYHRYEKEFVPNNNSNRGTNGGSNSTTTNNGKNAPTTM 244
                                              NSN+ + G  ++ T +N     T  
Sbjct: 133 -----------------------------------NSNKKSKG--HTFTPSNSNQNLTAF 192

Query: 245 MATQNSNPFMTNTDGVLDSSWYVDS-ASNHVTTEYNNLSNLMEYG-----------DNHV 304
           + T NSN F+T  + V+DS+WYVD+ A+NHVT +Y+NLSN ++Y            DN+V
Sbjct: 193 VTTYNSNSFVT-PETVIDSNWYVDNGATNHVTADYSNLSNPLKYSGIEHVIVGNAQDNNV 244

Query: 305 YIEFHDNCCLVKDKGTSRVISKGILKDGLYQLEDIAAIKSLEVAKESK 336
           Y+EFH + C V +K T R I +G+LKDGLY LE +A +  L+ +   K
Sbjct: 253 YLEFHGDYCFVNNKDTGRTIMRGVLKDGLYHLESVAVLADLKKSGSRK 244

The following BLAST results are available for this feature:

BLAST of ClCG08G003520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	7.4e-51	31.17	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_016902197.1	1.5e-40	35.45	PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]	[more]
XP_016902203.1	2.9e-39	38.01	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
XP_038905161.1	5.5e-38	36.25	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]
XP_038905164.1	1.2e-37	36.98	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]

BLAST of ClCG08G003520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.1e-12	39.29	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.0e-12	39.29	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of ClCG08G003520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	3.6e-51	31.17	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S4E1U6	7.5e-41	35.45	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1V2	1.4e-39	38.01	uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SIT7	2.2e-37	34.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CPY2	3.8e-37	38.89	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]

BLAST of ClCG08G003520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 315..437 e-value: 4.2E-14 score: 54.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..235
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 243..391 score: 9.40323
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 335..429

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G003520.1	ClCG08G003520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding