ClCG08G003460 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G003460
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr08: 9151154 .. 9152161 (-)
RNA-Seq ExpressionClCG08G003460
SyntenyClCG08G003460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCCTTTGTGCTCTCACTTGTTCGTCTTCACAGTTCCTTGCTCCCTTATGGTCGTTACTCGACAAGGAAGTGTGTCTTCTTCAAGCAAAATGGTGAGGTACAAAGAAAAAGCTAAGAGGAAGTTGTATGTAGAAAAGGAAGAGCCTCTGACTACTACAAACAAGTACGGGGTTCAGGTTCGTGGCCTGCCTGTATCAAGTTCTGAGATAGGAGTTTCTTCTTTGTCTGCTAAGCGTTGTCGCTCCAGTGGAGGGCTTTCTAATGACGAGAAAGACAAGGAAAAGGTAAGTGCCTCTGCCTTAACGTTGACTGACTTGGTAGGTGTAAGGGTTGAAATATGACCTAGTAAAGTTAACTCCTCTTTTAGTGACTCGTCCCAACACATGCATGATTTTATCACTGTTGTTAGAAATCAAAGGGAAACTGCTACTTCAGGGTCTGAGGTAGAAAATGTAGAGGCAGGTTCGGTTAATAAACCTAGTGTTTCCATGATCGATTGTGTTGATAAGAATATCTTTGAATCTGGTGGTGATGGGAAGACAAAAGATCATGATGTTGTCATTTCTGATAAACATTCCTTGGTTTGGTCAGAAGAAGAGATTTCGAATGATTTTGTGAATCAAGTTTTGTTTGAAACCATTGTGTCTGTGATTGATGAGCTTAAGAAGAATGCTGCGAGTGGTGTGGTTAGTCCTACGAAAACTTAGGAGAAAATAGATAAGGGTTCTCCACTAAAAAGTGTTATGAGTGGAAAAATTTCCAAGTGTGGAGTCTTTAGGGTTGATGCTCCTAGTGTGTGCCCTGCGACTCATATGGAACTATCTACTCCTGATAATGTTGACAATGAGGCTCATCTAGGAGCCAATGCTGGTAATGAAGATGATGTTTTGAGTCAGGAGGATGTTGAGGAAGGTGAATGGGCCTTTTCTGTCACACCCAGTCTGGCTATCGACATGTCAAGATATGATGCTCAGGATACTTCTTCTGAGGATGACTCTTACTAG

mRNA sequence

ATGCGCCCTTTGTGCTCTCACTTGTTCGTCTTCACAGTTCCTTGCTCCCTTATGGTCGTTACTCGACAAGGAAGTGTGTCTTCTTCAAGCAAAATGGTGAGGTACAAAGAAAAAGCTAAGAGGAAGTTGTATGTAGAAAAGGAAGAGCCTCTGACTACTACAAACAAGTACGGGGTTCAGGTTCGTGGCCTGCCTGTATCAAGTTCTGAGATAGGAGTTTCTTCTTTGTCTGCTAAGCGTTGTCGCTCCAGTGGAGGGCTTTCTAATGACGAGAAAGACAAGGAAAAGGTAAGTGCCTCTGCCTTAACGTTGACTGACTTGGTAGGGTCTGAGGTAGAAAATGTAGAGGCAGGTTCGGTTAATAAACCTAGTGTTTCCATGATCGATTGTGTTGATAAGAATATCTTTGAATCTGGTGGTGATGGGAAGACAAAAGATCATGATGTTGTCATTTCTGATAAACATTCCTTGGTTTGGTCAGAAGAAGAGATTTCGAATGATTTTGTGAATCAAGTTTTGTTTGAAACCATTGTGTCTGTGATTGATGAGCTTAAGAAGAATGCTGCGAGTGGTGTGTGTGGAGTCTTTAGGGTTGATGCTCCTAGTGTGTGCCCTGCGACTCATATGGAACTATCTACTCCTGATAATGTTGACAATGAGGCTCATCTAGGAGCCAATGCTGGTAATGAAGATGATGTTTTGAGTCAGGAGGATGTTGAGGAAGGTGAATGGGCCTTTTCTGTCACACCCAGTCTGGCTATCGACATGTCAAGATATGATGCTCAGGATACTTCTTCTGAGGATGACTCTTACTAG

Coding sequence (CDS)

ATGCGCCCTTTGTGCTCTCACTTGTTCGTCTTCACAGTTCCTTGCTCCCTTATGGTCGTTACTCGACAAGGAAGTGTGTCTTCTTCAAGCAAAATGGTGAGGTACAAAGAAAAAGCTAAGAGGAAGTTGTATGTAGAAAAGGAAGAGCCTCTGACTACTACAAACAAGTACGGGGTTCAGGTTCGTGGCCTGCCTGTATCAAGTTCTGAGATAGGAGTTTCTTCTTTGTCTGCTAAGCGTTGTCGCTCCAGTGGAGGGCTTTCTAATGACGAGAAAGACAAGGAAAAGGTAAGTGCCTCTGCCTTAACGTTGACTGACTTGGTAGGGTCTGAGGTAGAAAATGTAGAGGCAGGTTCGGTTAATAAACCTAGTGTTTCCATGATCGATTGTGTTGATAAGAATATCTTTGAATCTGGTGGTGATGGGAAGACAAAAGATCATGATGTTGTCATTTCTGATAAACATTCCTTGGTTTGGTCAGAAGAAGAGATTTCGAATGATTTTGTGAATCAAGTTTTGTTTGAAACCATTGTGTCTGTGATTGATGAGCTTAAGAAGAATGCTGCGAGTGGTGTGTGTGGAGTCTTTAGGGTTGATGCTCCTAGTGTGTGCCCTGCGACTCATATGGAACTATCTACTCCTGATAATGTTGACAATGAGGCTCATCTAGGAGCCAATGCTGGTAATGAAGATGATGTTTTGAGTCAGGAGGATGTTGAGGAAGGTGAATGGGCCTTTTCTGTCACACCCAGTCTGGCTATCGACATGTCAAGATATGATGCTCAGGATACTTCTTCTGAGGATGACTCTTACTAG

Protein sequence

MRPLCSHLFVFTVPCSLMVVTRQGSVSSSSKMVRYKEKAKRKLYVEKEEPLTTTNKYGVQVRGLPVSSSEIGVSSLSAKRCRSSGGLSNDEKDKEKVSASALTLTDLVGSEVENVEAGSVNKPSVSMIDCVDKNIFESGGDGKTKDHDVVISDKHSLVWSEEEISNDFVNQVLFETIVSVIDELKKNAASGVCGVFRVDAPSVCPATHMELSTPDNVDNEAHLGANAGNEDDVLSQEDVEEGEWAFSVTPSLAIDMSRYDAQDTSSEDDSY
Homology
[Close]
BLAST of ClCG08G003460 vs. NCBI nr
Match: XP_038887148.1 (uncharacterized protein LOC120077338 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 0 

Query: 19  VVTRQGSVSSSSKMVRYKEKAKRKLYVEKEEPLTTTNKYGVQVRGLPVSSSEIGVSSLSA 78
           + TRQG+ +S+SKMVR KEKAK+K+ VE++  LTT NKYG+ + GL V   E+G+     
Sbjct: 147 ISTRQGTHTSNSKMVRNKEKAKQKVCVEEDVSLTTLNKYGIHMHGLLVEKKEVGIPPPLE 206

Query: 79  KRCRSSGG---LSNDEKDKEKVSASALTLTDLVGSEVENVEAGSVNKPSVSMIDCVDKNI 138
           KR         ++N   D+E ++  ++    L     E ++    +     M D   +N+
Sbjct: 207 KRSEEDVNTPLVTNPMTDQENLNDDSV-YDPLFAENGEKLKDAVTSNVDPQMSDQNPENL 266

Query: 139 FESGGDGKTKDH--DVVIS 153
             S G     D   DV +S
Sbjct: 267 EHSLGSVHVSDEGSDVNVS 284

The following BLAST results are available for this feature:
BLAST of ClCG08G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887148.11.3e-0433.09uncharacterized protein LOC120077338 [Benincasa hispida][more]
BLAST of ClCG08G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G003460.1ClCG08G003460.1mRNA