ClCG08G003450 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G003450
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionFlocculation protein FLO11-like
LocationCG_Chr08: 9150495 .. 9150922 (-)
RNA-Seq ExpressionClCG08G003450
SyntenyClCG08G003450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTCTTCTTCAATCTGGGTTGGGCAAAATAGTTCTCAAGATTGGGCCCTATTACGTGAATTCATTGTCAACCTCTCAGCTGATTTTGATGACTCCATTAGTTTTGATTTTCAAAAAATGTATATTCGTTGGCATCAATTTATCATTTCTCCAGTTATGATTAATCAATTTCTTTAGAGGACCACAGCAGAGAATGTTACTAAACAGAGACTCTCCCTTTGGGAGTTGGTGTTTGAGCTCTCCGGTGGGACACACTCTACGTGGCCCAAGAAAGGTCAATTACCCACGGCTGTGCTGAGTGTTAAGTATGCTTTGCTCCATCGGATTGGCATCACCAATTGCTGCCTTTCATCTCACCATTTAGGCCTCTCAAACTTCGATGGTGAAATTAATTGTAGAACTAAGAAAGTAGTAAAAAGTTGA

mRNA sequence

ATGGATCTTCTTCTTCAATCTGGGTTGGGCAAAATAGTTCTCAAGATTGGGCCCTATTACGTGAATTCATTGTCAACCTCTCAGCTGATTTTGATGACTCCATTAGTTTTGATTTTCAAAAAATGTATATTCGTTGGCATCAATTTATCATTTCTCCAGACCACAGCAGAGAATGTTACTAAACAGAGACTCTCCCTTTGGGAGTTGGTGTTTGAGCTCTCCGGTGGGACACACTCTACGTGGCCCAAGAAAGGTCAATTACCCACGGCTGTGCTGAGTGTTAAGTATGCTTTGCTCCATCGGATTGGCATCACCAATTGCTGCCTTTCATCTCACCATTTAGGCCTCTCAAACTTCGATGGTGAAATTAATTGTAGAACTAAGAAAGTAGTAAAAAGTTGA

Coding sequence (CDS)

ATGGATCTTCTTCTTCAATCTGGGTTGGGCAAAATAGTTCTCAAGATTGGGCCCTATTACGTGAATTCATTGTCAACCTCTCAGCTGATTTTGATGACTCCATTAGTTTTGATTTTCAAAAAATGTATATTCGTTGGCATCAATTTATCATTTCTCCAGACCACAGCAGAGAATGTTACTAAACAGAGACTCTCCCTTTGGGAGTTGGTGTTTGAGCTCTCCGGTGGGACACACTCTACGTGGCCCAAGAAAGGTCAATTACCCACGGCTGTGCTGAGTGTTAAGTATGCTTTGCTCCATCGGATTGGCATCACCAATTGCTGCCTTTCATCTCACCATTTAGGCCTCTCAAACTTCGATGGTGAAATTAATTGTAGAACTAAGAAAGTAGTAAAAAGTTGA

Protein sequence

MDLLLQSGLGKIVLKIGPYYVNSLSTSQLILMTPLVLIFKKCIFVGINLSFLQTTAENVTKQRLSLWELVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNCCLSSHHLGLSNFDGEINCRTKKVVKS
Homology
[Close]
BLAST of ClCG08G003450 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-14
Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSLSTSQLILMTPLVLIFKKCIFV----GINLSFLQTTA 60
           M+L+  + L + VL +GPYY             PL +  ++  FV     IN    +   
Sbjct: 48  MELIQTASLERTVLNLGPYY------------PPLRVHIRRHSFVFSATVINQFLCRNVP 107

Query: 61  ENVTKQRLSLWELVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNCCLSSHHLGL 118
           ENV KQ  SL +LVFEL G   STWP++GQLPTA L+VKY LLHRIGI + C SSH   L
Sbjct: 108 ENVRKQHPSLRDLVFELIGEARSTWPRRGQLPTAGLNVKYTLLHRIGIYSWCPSSHKSSL 156

[Close]
BLAST of ClCG08G003450 vs. NCBI nr
Match: XP_038889203.1 (uncharacterized protein LOC120079088 [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-11
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 47  INLSFLQTTAENVTKQRLSLWELVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITN 106
           IN    +   ENV +Q  SL +LVFEL+GG  STWP KGQL T  LSVKY LLHRIG  N
Sbjct: 126 INQFLCRNVPENVREQHPSLRDLVFELTGGARSTWPHKGQLSTTALSVKYVLLHRIGSYN 185

Query: 107 CCLSSHHLGLS 118
            C S H   LS
Sbjct: 186 WCPSLHKSSLS 196

[Close]
BLAST of ClCG08G003450 vs. NCBI nr
Match: XP_038887050.1 (uncharacterized protein LOC120077220 [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 49/130 (37.69%), Postives = 63/130 (48.46%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSLSTSQLILMTPL----------VLIFKKCIFVG---I 60
           M+L ++  +   VL  GPYY   +    + L              V + + C       I
Sbjct: 64  MNLFVKPSIVCSVLNFGPYYPQLVCEFYVNLSHQFDNEGSLDYRKVHVNEHCFVFSAYLI 123

Query: 61  NLSFLQTTAENVTKQRLSLWELVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNC 118
           N        ENVT+QR  + +LVFEL+      WPKK QLP + LSVKY LLH+IGI N 
Sbjct: 124 NRFLNCQVPENVTEQRSFMSDLVFELTRRVKRAWPKKDQLPCSDLSVKYVLLHKIGIENW 183

[Close]
BLAST of ClCG08G003450 vs. NCBI nr
Match: KAA0056211.1 (uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 47/130 (36.15%), Postives = 63/130 (48.46%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSL------------STSQLILMTPLVLIFKKCIFVGIN 60
           MDL+ ++GL K +  +GP+Y   +            + S     T  +  FK  I + + 
Sbjct: 280 MDLIHKAGLEKTISDVGPFYPQLIREFIVNLPNEFNNPSSADYQTVHITGFKFVISLAVI 339

Query: 61  LSFLQTTAENVTKQRLSLWE-LVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNC 118
             FL  T         S  E L   LSGGT STWP  G +P A L+VKYA+LH+IGI N 
Sbjct: 340 DGFLGNTIYIDCSPSCSTTEVLATVLSGGTLSTWPMNG-IPAAALNVKYAILHKIGIVNW 399

[Close]
BLAST of ClCG08G003450 vs. NCBI nr
Match: XP_008465030.1 (PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 47/130 (36.15%), Postives = 63/130 (48.46%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSL------------STSQLILMTPLVLIFKKCIFVGIN 60
           MDL+ ++GL K +  +GP+Y   +            + S     T  +  FK  I + + 
Sbjct: 280 MDLIHKAGLEKTISDVGPFYPQLIREFIVNLPNEFNNPSSADYQTVHITGFKFVISLAVI 339

Query: 61  LSFLQTTAENVTKQRLSLWE-LVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNC 118
             FL  T         S  E L   LSGGT STWP  G +P A L+VKYA+LH+IGI N 
Sbjct: 340 DGFLGNTIYIDCSPSCSTTEVLATVLSGGTLSTWPMNG-IPAAALNVKYAILHKIGIVNW 399

[Close]
BLAST of ClCG08G003450 vs. ExPASy TrEMBL
Match: A0A5A7URQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 47/130 (36.15%), Postives = 63/130 (48.46%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSL------------STSQLILMTPLVLIFKKCIFVGIN 60
           MDL+ ++GL K +  +GP+Y   +            + S     T  +  FK  I + + 
Sbjct: 280 MDLIHKAGLEKTISDVGPFYPQLIREFIVNLPNEFNNPSSADYQTVHITGFKFVISLAVI 339

Query: 61  LSFLQTTAENVTKQRLSLWE-LVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNC 118
             FL  T         S  E L   LSGGT STWP  G +P A L+VKYA+LH+IGI N 
Sbjct: 340 DGFLGNTIYIDCSPSCSTTEVLATVLSGGTLSTWPMNG-IPAAALNVKYAILHKIGIVNW 399

[Close]
BLAST of ClCG08G003450 vs. ExPASy TrEMBL
Match: A0A1S3CMY0 (uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 47/130 (36.15%), Postives = 63/130 (48.46%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSL------------STSQLILMTPLVLIFKKCIFVGIN 60
           MDL+ ++GL K +  +GP+Y   +            + S     T  +  FK  I + + 
Sbjct: 280 MDLIHKAGLEKTISDVGPFYPQLIREFIVNLPNEFNNPSSADYQTVHITGFKFVISLAVI 339

Query: 61  LSFLQTTAENVTKQRLSLWE-LVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNC 118
             FL  T         S  E L   LSGGT STWP  G +P A L+VKYA+LH+IGI N 
Sbjct: 340 DGFLGNTIYIDCSPSCSTTEVLATVLSGGTLSTWPMNG-IPAAALNVKYAILHKIGIVNW 399

[Close]
BLAST of ClCG08G003450 vs. ExPASy TrEMBL
Match: A0A5A7VE32 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold301G00200 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 43/121 (35.54%), Postives = 59/121 (48.76%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSLSTSQLILMTPLVLIFKKCIFVGINLSFLQTTAENVT 60
           +DL+L  GL + + ++GP+Y          LM  L+        V +   F   + E   
Sbjct: 544 LDLILNVGLLRTISEVGPFYPQ--------LMHELI--------VNLPSDFNDPSVEEYQ 603

Query: 61  KQRLSLWELVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNCCLSSHHLGLSNFD 120
           K          EL+GGT   WP  GQL  A L+VKYA+LHRIGI+N   S+H   +S F 
Sbjct: 604 K----------ELTGGTVPVWPVDGQLLVASLTVKYAILHRIGISNWIPSTHASTISTFL 638

Query: 121 G 122
           G
Sbjct: 664 G 638

[Close]
BLAST of ClCG08G003450 vs. ExPASy TrEMBL
Match: A0A5A7TK74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001380 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 46/130 (35.38%), Postives = 62/130 (47.69%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSL------------STSQLILMTPLVLIFKKCIFVGIN 60
           MDL+ ++GL K +  +GP+Y   +              S     T  +  FK  I   + 
Sbjct: 89  MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNDPSSADYQTVHIRGFKFVISPTVI 148

Query: 61  LSFLQTTAENVTKQRLSLWE-LVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNC 118
             FL+ T +        + E L   LSGGT STWP  G +P A LSVKYA+LH+I I N 
Sbjct: 149 NGFLENTVDFDCSPSCPITEVLATVLSGGTLSTWPVNG-IPAAALSVKYAILHKIDIANW 208

[Close]
BLAST of ClCG08G003450 vs. ExPASy TrEMBL
Match: A0A5D3DTI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00660 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 46/130 (35.38%), Postives = 62/130 (47.69%), Query Frame = 0 

Query: 1   MDLLLQSGLGKIVLKIGPYYVNSL------------STSQLILMTPLVLIFKKCIFVGIN 60
           MDL+ ++GL K +  +GP+Y   +              S     T  +  FK  I   + 
Sbjct: 89  MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNDPSSADYQTVHIRGFKFVISPTVI 148

Query: 61  LSFLQTTAENVTKQRLSLWE-LVFELSGGTHSTWPKKGQLPTAVLSVKYALLHRIGITNC 118
             FL+ T +        + E L   LSGGT STWP  G +P A LSVKYA+LH+I I N 
Sbjct: 149 NGFLENTVDFDCSPSCPITEVLATVLSGGTLSTWPVNG-IPAAALSVKYAILHKIDIANW 208

The following BLAST results are available for this feature:
BLAST of ClCG08G003450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904458.12.6e-1445.45uncharacterized protein LOC120090822 [Benincasa hispida][more]
XP_038889203.12.7e-1157.75uncharacterized protein LOC120079088 [Benincasa hispida][more]
XP_038887050.11.3e-0837.69uncharacterized protein LOC120077220 [Benincasa hispida][more]
KAA0056211.13.4e-0636.15uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa][more]
XP_008465030.13.4e-0636.15PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo][more]
BLAST of ClCG08G003450 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G003450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7URQ61.7e-0636.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CMY01.7e-0636.15uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=... [more]
A0A5A7VE322.8e-0635.54Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7TK743.7e-0635.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTI53.7e-0635.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of ClCG08G003450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G003450.1ClCG08G003450.1mRNA