ClCG08G003415 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G003415
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CCHC-type domain-containing protein
Location	CG_Chr08: 8873436 .. 8874965 (+)
RNA-Seq Expression	ClCG08G003415
Synteny	ClCG08G003415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGAGAAAAAAGAGAAAGGATTGGTGAAATTTGAGAAATTTAATTTTCCATAAAATCTCACTTTCTTTATTTTAGTTTATTTTAAGTTTACTTTATTTAATTTGGTTATTTTAATTCCTTTGATATTATTTTATTATTTATTATTTTAATATTTTAATATCTCTGTTTTTGTGCTCCTGTCTTTCTGTCATTTTGCTCCTCAATTTTACAATACGTTATTAGCATGAGCTCTTGTCGTTTCTCTGTTGAAGATAGGTTCTGAAGGTATGTCATTTTTTCTTTGTTATAATTAGTAAATTAAACGTTGTTTTGCATGTTTAGTATATATTAAATTGCTAATATAAATATAATTATTTGTGATAGTGTTATCATGGCAAATCTTACAAAAATAGAATTTGCCACCCTTGACATCAATGGAAATAATTATTGTCATGGGTGCTTGATGCTGAAATACATCTAGATGCCATGAACCTGAGAGAAACAATTAAACAGGGAAATGCAACATCCATTCAGGAAAAAGCAAAAACTATGATTTTCCTTCGTCGTCATCTCCACGAGGGATTGAAGATGGAATATTTAACAATAAAAGATCTCTATATCTTGTGGAAGAATTTAAAACAGAGATATAATCATCAGAAAACAGTCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGTTTCCAAGATTTCAAATCAGTAAGTGACTACAACTCCGCATTATTTAAAATCAGTTCAAAATTGTTGTTGTGCGGAGAGAAAATTACCGATGCGGATATGTTGGAGAAGACATTTTCTACATTTCATACCTTGAATATGCTCCTGCAGCAGCAATATCCAGAGAAATGTTTTAAACAATATTCTAAATTAATTTCATGTCTTCTCGTAGCTGAACAAAATAATGAGCTATTGATGAAGAACCATGAATCTCGACCAACTGGAACAACACAATTCCCTGAAGTGAATGCTGTAAATTTTAATAATCGTGGTCGAGGTTGTGGTCGTGGTTGTGACCATGGCAAAGGAAGAAATAATTATTTTTTTCGTGGTGGTCATTCTAATCATCTAAATTTCAAAAGAACCACCTTAAATGATGATCATAAAGGAAAAGCTCCATAAGATAAAAATACAAAAGATGATGAACATAAATGCTACCGATGCAGGATGACTGAGCACTGATCTCGTGTTTGTCGTACATCAAAATACCTAGTTGATATCTATCAAGTTTCCTTGAAGGAAAAAGAGAAAAATGTGGAAACAAATTTTGCATACCAGAATAATGATATATTTGACCCATCCAATATGACAAATTTAGATGTGGCGGACTTATTTGAATCTTCTGAAGAGATAATCAGCACAGATGATAGCATAGCAAGTGTTTCTTTTAATTTTGAGAATATTTAGAATTAATGTTGTTTTTTTTGTCCATCTATCTTTCATATTTTTTTTAAACTTTTGTATTTCAAGTTTTGTTTGTCTTATTGTAATTCTTTTGTTTAAATGAATAATCATAGACAATTTTCAT

mRNA sequence

TGGAGAGAAAAAAGAGAAAGGATTGGTGAAATTTGAGAAATTTAATTTTCCATAAAATCTCACTTTCTTTATTTTAGTTTATTTTAAGTTTACTTTATTTAATTTGGTTATTTTAATTCCTTTGATATTATTTTATTATTTATTATTTTAATATTTTAATATCTCTGTTTTTGTGCTCCTGTCTTTCTGTCATTTTGCTCCTCAATTTTACAATACGTTATTAGCATGAGCTCTTGTCGTTTCTCTGTTGAAGATAGGTTCTGAAGTGTTATCATGGCAAATCTTACAAAAATAGAATTTGCCACCCTTGACATCAATGGAAATAATTATTGTCATGGGTGCTTGATGCTGAAATACATCTAGATGCCATGAACCTGAGAGAAACAATTAAACAGGGAAATGCAACATCCATTCAGGAAAAAGCAAAAACTATGATTTTCCTTCGTCGTCATCTCCACGAGGGATTGAAGATGGAATATTTAACAATAAAAGATCTCTATATCTTGTGGAAGAATTTAAAACAGAGATATAATCATCAGAAAACAGTCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGTTTCCAAGATTTCAAATCAGTAAGTGACTACAACTCCGCATTATTTAAAATCAGTTCAAAATTGTTGTTGTGCGGAGAGAAAATTACCGATGCGGATATGTTGGAGAAGACATTTTCTACATTTCATACCTTGAATATGCTCCTGCAGCAGCAATATCCAGAGAAATGTTTTAAACAATATTCTAAATTAATTTCATGTCTTCTCGTAGCTGAACAAAATAATGAGCTATTGATGAAGAACCATGAATCTCGACCAACTGGAACAACACAATTCCCTGAAGTGAATGCTGTAAATTTTAATAATCGTGGTCGAGGTTGTGGTCGTGGTTGTGACCATGGCAAAGGAAGAAATAATTATTTTTTTCGTGGTGGTCATTCTAATCATCTAAATTTCAAAAGAACCACCTTAAATGATGATCATAAAGGAAAAGCTCCATAAGATAAAAATACAAAAGATGATGAACATAAATGCTACCGATGCAGGATGACTGAGCACTGATCTCGTGTTTGTCGTACATCAAAATACCTAGTTGATATCTATCAAGTTTCCTTGAAGGAAAAAGAGAAAAATGTGGAAACAAATTTTGCATACCAGAATAATGATATATTTGACCCATCCAATATGACAAATTTAGATGTGGCGGACTTATTTGAATCTTCTGAAGAGATAATCAGCACAGATGATAGCATAGCAAGTGTTTCTTTTAATTTTGAGAATATTTAGAATTAATGTTGTTTTTTTTGTCCATCTATCTTTCATATTTTTTTTAAACTTTTGTATTTCAAGTTTTGTTTGTCTTATTGTAATTCTTTTGTTTAAATGAATAATCATAGACAATTTTCAT

Coding sequence (CDS)

ATGAACCTGAGAGAAACAATTAAACAGGGAAATGCAACATCCATTCAGGAAAAAGCAAAAACTATGATTTTCCTTCGTCGTCATCTCCACGAGGGATTGAAGATGGAATATTTAACAATAAAAGATCTCTATATCTTGTGGAAGAATTTAAAACAGAGATATAATCATCAGAAAACAGTCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGTTTCCAAGATTTCAAATCAGTAAGTGACTACAACTCCGCATTATTTAAAATCAGTTCAAAATTGTTGTTGTGCGGAGAGAAAATTACCGATGCGGATATGTTGGAGAAGACATTTTCTACATTTCATACCTTGAATATGCTCCTGCAGCAGCAATATCCAGAGAAATGTTTTAAACAATATTCTAAATTAATTTCATGTCTTCTCGTAGCTGAACAAAATAATGAGCTATTGATGAAGAACCATGAATCTCGACCAACTGGAACAACACAATTCCCTGAAGTGAATGCTGTAAATTTTAATAATCGTGGTCGAGGTTGTGGTCGTGGTTGTGACCATGGCAAAGGAAGAAATAATTATTTTTTTCGTGGTGGTCATTCTAATCATCTAAATTTCAAAAGAACCACCTTAAATGATGATCATAAAGGAAAAGCTCCATAA

Protein sequence

MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTVILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNMLLQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNNRGRGCGRGCDHGKGRNNYFFRGGHSNHLNFKRTTLNDDHKGKAP

Homology

[Close]

BLAST of ClCG08G003415 vs. NCBI nr
Match: WP_217833168.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 355.1 bits (910), Expect = 4.2e-94
Identity = 182/210 (86.67%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL ETIK+GNATSIQEKAK MIFLR HLHE LKMEYLTIKDL ILWKNLKQRY+HQKTV
Sbjct: 33  MNLGETIKEGNATSIQEKAKAMIFLRHHLHERLKMEYLTIKDLSILWKNLKQRYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARYEWMHL  QDFKSVSDYNSALFKISSKLLLCGEKITDA MLE TFSTFH  NML
Sbjct: 93  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDAYMLENTFSTFHASNML 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNN--RGRG 180
           +QQQY EK FKQYS+LISCLLVAEQNNELLMKNHESRPTGTT FPEVNAVNFNN  RGRG
Sbjct: 153 MQQQYREKGFKQYSELISCLLVAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRGRG 212

Query: 181 CGRGCDHGKGRNNYFFRGGHSNHLNFKRTT 209
            GRG D G+GRN+Y+FRG HSNH NFKRTT
Sbjct: 213 RGRGRDRGRGRNSYYFRGSHSNHPNFKRTT 242

[Close]

BLAST of ClCG08G003415 vs. NCBI nr
Match: XP_022144017.1 (uncharacterized protein LOC111013806 [Momordica charantia])

HSP 1 Score: 329.7 bits (844), Expect = 1.9e-86
Identity = 168/210 (80.00%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL ETIK+ N T+ QE AK MIFLR HLHEGLKMEYLTIKDL  LW+NLK+RY+HQKTV
Sbjct: 33  MNLGETIKEENTTTSQENAKAMIFLRHHLHEGLKMEYLTIKDLLALWQNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARYEWMHL  QDFKSVSDYNSALFKISSKL LCGEKITD+DMLEKT+STFH  N+L
Sbjct: 93  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLKLCGEKITDSDMLEKTYSTFHVSNIL 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNN--RGRG 180
           LQQQY EK FK+YS+LISCLLVA+QNNELLMKNHESRPTG T FPE NAVNFNN  RGRG
Sbjct: 153 LQQQYREKGFKKYSELISCLLVAKQNNELLMKNHESRPTGATPFPEANAVNFNNRGRGRG 212

Query: 181 CGRGCDHGKGRNNYFFRGGHSNHLNFKRTT 209
            GRG D G+GRNN+ FRGG  N  NFKRTT
Sbjct: 213 RGRGRDRGRGRNNFSFRGGRYNRPNFKRTT 242

[Close]

BLAST of ClCG08G003415 vs. NCBI nr
Match: RVW94544.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 284.6 bits (727), Expect = 7.0e-73
Identity = 142/210 (67.62%), Postives = 172/210 (81.90%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL  TIKQGN  S+Q++AK +IFLR HLHEGLK EYLT+KD + LW NLK+RY+HQKTV
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARY+WMHL  QDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFH  N+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNNRGRGCG 180
           LQQQY E+ F +YS+LISCLLVAEQNNELLM+NH+SRPTG+  FPEVNA++   RGRG G
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRG 212

Query: 181 RGCDHGKGRNNYFFRGGHSNHLNFKRTTLN 211
           RG   G+GRN   + G +SN+    + +L+
Sbjct: 213 RGRGRGRGRNPR-YHGSYSNNSQKMKASLH 241

[Close]

BLAST of ClCG08G003415 vs. NCBI nr
Match: XP_028787995.1 (uncharacterized protein LOC114743980 [Prosopis alba])

HSP 1 Score: 283.5 bits (724), Expect = 1.5e-72
Identity = 148/215 (68.84%), Postives = 171/215 (79.53%), Query Frame = 0


Query: 3   LRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTVIL 62
           L +TIK+GN  S Q+KAK MIFLR HLHEGLK+EYLTIKD  +LW NLK+RY+HQKTVIL
Sbjct: 35  LGDTIKEGNQASNQDKAKAMIFLRHHLHEGLKIEYLTIKDPLVLWNNLKERYDHQKTVIL 94

Query: 63  PKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNMLLQ 122
           PKARY+WMHL  QDFKSV +YNSA+F+ISS+L LCGEKITD DMLEKTFSTFH  N+LLQ
Sbjct: 95  PKARYDWMHLRLQDFKSVIEYNSAMFRISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQ 154

Query: 123 QQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAV-NFNNRGRGCGR 182
           QQY EK FK+YS+LISCLLVAEQNNELLM+NHESRPTG+T FPEVN V   + RG G GR
Sbjct: 155 QQYREKGFKKYSELISCLLVAEQNNELLMRNHESRPTGSTPFPEVNVVATESTRGHGRGR 214

Query: 183 GCDHGKGRNNYFFRGGHSNHLNFKRTTLNDDHKGK 217
           G   G+GR     RGG  +H   ++   ND+H  K
Sbjct: 215 GRGRGRGRGRGRGRGGDRSH---QKWANNDEHHQK 246

[Close]

BLAST of ClCG08G003415 vs. NCBI nr
Match: XP_028800338.1 (uncharacterized protein LOC114755637 [Prosopis alba])

HSP 1 Score: 283.5 bits (724), Expect = 1.5e-72
Identity = 148/215 (68.84%), Postives = 171/215 (79.53%), Query Frame = 0


Query: 3   LRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTVIL 62
           L +TIK+GN  S Q+KAK MIFLR HLHEGLK+EYLTIKD  +LW NLK+RY+HQKTVIL
Sbjct: 35  LGDTIKEGNQASNQDKAKAMIFLRHHLHEGLKIEYLTIKDPLVLWNNLKERYDHQKTVIL 94

Query: 63  PKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNMLLQ 122
           PKARY+WMHL  QDFKSV +YNSA+F+ISS+L LCGEKITD DMLEKTFSTFH  N+LLQ
Sbjct: 95  PKARYDWMHLCLQDFKSVIEYNSAMFRISSQLKLCGEKITDEDMLEKTFSTFHASNVLLQ 154

Query: 123 QQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAV-NFNNRGRGCGR 182
           QQY EK FK+YS+LISCLLVAEQNNELLM+NHESRPTG+T FPEVN V   + RG G GR
Sbjct: 155 QQYREKGFKKYSELISCLLVAEQNNELLMRNHESRPTGSTPFPEVNVVATESTRGHGRGR 214

Query: 183 GCDHGKGRNNYFFRGGHSNHLNFKRTTLNDDHKGK 217
           G   G+GR     RGG  +H   ++   ND+H  K
Sbjct: 215 GRGRGRGRGRGRGRGGDRSH---QKWANNDEHHQK 246

[Close]

BLAST of ClCG08G003415 vs. ExPASy TrEMBL
Match: A0A6J1CSH6 (uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013806 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 9.1e-87
Identity = 168/210 (80.00%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL ETIK+ N T+ QE AK MIFLR HLHEGLKMEYLTIKDL  LW+NLK+RY+HQKTV
Sbjct: 33  MNLGETIKEENTTTSQENAKAMIFLRHHLHEGLKMEYLTIKDLLALWQNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARYEWMHL  QDFKSVSDYNSALFKISSKL LCGEKITD+DMLEKT+STFH  N+L
Sbjct: 93  ILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLKLCGEKITDSDMLEKTYSTFHVSNIL 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNN--RGRG 180
           LQQQY EK FK+YS+LISCLLVA+QNNELLMKNHESRPTG T FPE NAVNFNN  RGRG
Sbjct: 153 LQQQYREKGFKKYSELISCLLVAKQNNELLMKNHESRPTGATPFPEANAVNFNNRGRGRG 212

Query: 181 CGRGCDHGKGRNNYFFRGGHSNHLNFKRTT 209
            GRG D G+GRNN+ FRGG  N  NFKRTT
Sbjct: 213 RGRGRDRGRGRNNFSFRGGRYNRPNFKRTT 242

[Close]

BLAST of ClCG08G003415 vs. ExPASy TrEMBL
Match: A0A438ID00 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1841 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.4e-73
Identity = 142/210 (67.62%), Postives = 172/210 (81.90%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL  TIKQGN  S+Q++AK +IFLR HLHEGLK EYLT+KD + LW NLK+RY+HQKTV
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARY+WMHL  QDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFH  N+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNNRGRGCG 180
           LQQQY E+ F +YS+LISCLLVAEQNNELLM+NH+SRPTG+  FPEVNA++   RGRG G
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRG 212

Query: 181 RGCDHGKGRNNYFFRGGHSNHLNFKRTTLN 211
           RG   G+GRN   + G +SN+    + +L+
Sbjct: 213 RGRGRGRGRNPR-YHGSYSNNSQKMKASLH 241

[Close]

BLAST of ClCG08G003415 vs. ExPASy TrEMBL
Match: A5AJ43 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 9.8e-73
Identity = 141/210 (67.14%), Postives = 171/210 (81.43%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL  TIKQGN  S+Q++AK +IFLR HLHEGLK EY T+KD + LW NLK+RY+HQKTV
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYFTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARY+WMHL  QDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFH  N+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNNRGRGCG 180
           LQQQY E+ F +YS+LISCLLVAEQNNELLM+NH+SRPTG+  FPEVNA++   RGRG G
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRG 212

Query: 181 RGCDHGKGRNNYFFRGGHSNHLNFKRTTLN 211
           RG   G+GRN   + G +SN+    + +L+
Sbjct: 213 RGRGRGRGRNPR-YHGSYSNNSQKMKASLH 241

[Close]

BLAST of ClCG08G003415 vs. ExPASy TrEMBL
Match: A5B4M9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015758 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.2e-72
Identity = 141/210 (67.14%), Postives = 171/210 (81.43%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL  TIKQGN  S+Q++AK +IFLR HLHEGLK EYLT+KD + LW NLK+RY+HQKTV
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARY+WMHL  QDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFH  N+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNNRGRGCG 180
           LQQQY E+ F +YS+LISCLLVAEQNNELLM+NH+SRPTG+  FPEVNA++   RGRG G
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRG 212

Query: 181 RGCDHGKGRNNYFFRGGHSNHLNFKRTTLN 211
           RG   G+G N   + G +SN+    + +L+
Sbjct: 213 RGRGXGRGXNPR-YHGSYSNNSQKMKASLH 241

[Close]

BLAST of ClCG08G003415 vs. ExPASy TrEMBL
Match: A0A286QJ35 (Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.9e-72
Identity = 141/211 (66.82%), Postives = 171/211 (81.04%), Query Frame = 0


Query: 1   MNLRETIKQGNATSIQEKAKTMIFLRRHLHEGLKMEYLTIKDLYILWKNLKQRYNHQKTV 60
           MNL  TIKQGN  S+Q++AK +IFLR HLHEGLK EYLT+KD + LW NLK+RY+HQKTV
Sbjct: 33  MNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLWSNLKERYDHQKTV 92

Query: 61  ILPKARYEWMHLSFQDFKSVSDYNSALFKISSKLLLCGEKITDADMLEKTFSTFHTLNML 120
           ILPKARY+WMHL  QDFK+VS+YNSALFKISS+L LCGEKIT+ DMLEKTF+TFH  N+L
Sbjct: 93  ILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDMLEKTFTTFHASNVL 152

Query: 121 LQQQYPEKCFKQYSKLISCLLVAEQNNELLMKNHESRPTGTTQFPEVNAVNFNNRGRGCG 180
           LQQQY E+ F +YS+LISCLLVAEQNNELLM+NH+SRPTG+  FPEVNA++   RGRG  
Sbjct: 153 LQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEVNAISSQTRGRGRE 212

Query: 181 RGCDHGKGR-NNYFFRGGHSNHLNFKRTTLN 211
           RG   G+GR  N  + G +SN+    + +L+
Sbjct: 213 RGRGRGRGRGRNPRYHGSYSNNSQKMKASLH 243

The following BLAST results are available for this feature:

BLAST of ClCG08G003415 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833168.1	4.2e-94	86.67	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
XP_022144017.1	1.9e-86	80.00	uncharacterized protein LOC111013806 [Momordica charantia]	[more]
RVW94544.1	7.0e-73	67.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
XP_028787995.1	1.5e-72	68.84	uncharacterized protein LOC114743980 [Prosopis alba]	[more]
XP_028800338.1	1.5e-72	68.84	uncharacterized protein LOC114755637 [Prosopis alba]	[more]

BLAST of ClCG08G003415 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G003415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSH6	9.1e-87	80.00	uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A438ID00	3.4e-73	67.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5AJ43	9.8e-73	67.14	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1	[more]
A5B4M9	2.2e-72	67.14	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015758 PE=4 SV=1	[more]
A0A286QJ35	4.9e-72	66.82	Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1	[more]

BLAST of ClCG08G003415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33325	ZINC FINGER, CCHC-TYPE-RELATED	coord: 2..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G003415.1	ClCG08G003415.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding