ClCG08G003110 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G003110
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDUF4283 domain-containing protein
LocationCG_Chr08: 7572443 .. 7572850 (-)
RNA-Seq ExpressionClCG08G003110
SyntenyClCG08G003110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATTTTCAAGATTTGCACAATGGAACTACTTCTTGCATAGAACCAAAAGTTCCATCATATGGAGGTTGGATAAAGGTGAAAAATCTCTCAATCGATATGTGGAACATTGAAACCTTCGAATACATTGGAAATCTTTGTGGAGGCCTTTGTTATATTGCAAAAAAATCCCTCTCCTTTATGGATATGATGGAGGTTTGCCTGAAAGTGAATCAAAACCCATTCGGGTTCTTGTCGGCAAAAATTCAGCTTCCAACATCTTCCACCAAGCTGATCATTGAAATAGACCCTTTCTTTCAACTAGACAATCTGGTTGACTTCATCATTGGCAACCATGGTCGACAAAAGAAATCCACGTGCCAATCGATTCAAGCTGATGAATCCTCTCCTCCTAAACGTGTGTAG

mRNA sequence

ATGGAAGATTTTCAAGATTTGCACAATGGAACTACTTCTTGCATAGAACCAAAAGTTCCATCATATGGAGGTTGGATAAAGGTGAAAAATCTCTCAATCGATATGTGGAACATTGAAACCTTCGAATACATTGGAAATCTTTGTGGAGGCCTTTGTTATATTGCAAAAAAATCCCTCTCCTTTATGGATATGATGGAGGTTTGCCTGAAAGTGAATCAAAACCCATTCGGGTTCTTGTCGGCAAAAATTCAGCTTCCAACATCTTCCACCAAGCTGATCATTGAAATAGACCCTTTCTTTCAACTAGACAATCTGGTTGACTTCATCATTGGCAACCATGGTCGACAAAAGAAATCCACGTGCCAATCGATTCAAGCTGATGAATCCTCTCCTCCTAAACGTGTGTAG

Coding sequence (CDS)

ATGGAAGATTTTCAAGATTTGCACAATGGAACTACTTCTTGCATAGAACCAAAAGTTCCATCATATGGAGGTTGGATAAAGGTGAAAAATCTCTCAATCGATATGTGGAACATTGAAACCTTCGAATACATTGGAAATCTTTGTGGAGGCCTTTGTTATATTGCAAAAAAATCCCTCTCCTTTATGGATATGATGGAGGTTTGCCTGAAAGTGAATCAAAACCCATTCGGGTTCTTGTCGGCAAAAATTCAGCTTCCAACATCTTCCACCAAGCTGATCATTGAAATAGACCCTTTCTTTCAACTAGACAATCTGGTTGACTTCATCATTGGCAACCATGGTCGACAAAAGAAATCCACGTGCCAATCGATTCAAGCTGATGAATCCTCTCCTCCTAAACGTGTGTAG

Protein sequence

MEDFQDLHNGTTSCIEPKVPSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNPFGFLSAKIQLPTSSTKLIIEIDPFFQLDNLVDFIIGNHGRQKKSTCQSIQADESSPPKRV
Homology
[Close]
BLAST of ClCG08G003110 vs. NCBI nr
Match: QWT43305.1 (kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 104.4 bits (259), Expect = 8.0e-19
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 0 

Query: 16  EPKVPSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 75
           + +VPSYG WIK++NL ID W+ +TF+ IG LCGG    +KK+L+ MDMME  LKV  N 
Sbjct: 237 DAQVPSYGSWIKIRNLLIDQWSYDTFKLIGELCGGYIETSKKTLARMDMMEASLKVKMNK 296

Query: 76  FGFLSAKIQ-LPTSSTKLIIEIDPFFQLDNLVDFI 110
            GFL A IQ L TS+  + +++DPFF LD  + +I
Sbjct: 297 NGFLPAIIQLLSTSAFSMAVQMDPFFDLDLHIGYI 331

[Close]
BLAST of ClCG08G003110 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D+ E  +K+  N 
Sbjct: 263 PKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNY 322

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 323 SGFIPAYIKL 332

[Close]
BLAST of ClCG08G003110 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D+ E  +K+  N 
Sbjct: 279 PKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNY 338

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 339 TGFIPAYIKL 348

[Close]
BLAST of ClCG08G003110 vs. NCBI nr
Match: TYK24535.1 (hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D+ E  +K+  N 
Sbjct: 263 PKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNY 322

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 323 SGFIPAYIKL 332

[Close]
BLAST of ClCG08G003110 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D++E  +++  N 
Sbjct: 317 PKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNY 376

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 377 SGFIPAFIKL 386

[Close]
BLAST of ClCG08G003110 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-10
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D+ E  +K+  N 
Sbjct: 279 PKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNY 338

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 339 TGFIPAYIKL 348

[Close]
BLAST of ClCG08G003110 vs. ExPASy TrEMBL
Match: A0A5D3DLP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00770 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-10
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D+ E  +K+  N 
Sbjct: 263 PKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNY 322

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 323 SGFIPAYIKL 332

[Close]
BLAST of ClCG08G003110 vs. ExPASy TrEMBL
Match: A0A5A7TEK8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002490 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-10
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D+ E  +K+  N 
Sbjct: 263 PKVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNY 322

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 323 SGFIPAYIKL 332

[Close]
BLAST of ClCG08G003110 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.5e-10
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D++E  +++  N 
Sbjct: 317 PKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNY 376

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 377 SGFIPAFIKL 386

[Close]
BLAST of ClCG08G003110 vs. ExPASy TrEMBL
Match: A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.5e-10
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 17  PKV-PSYGGWIKVKNLSIDMWNIETFEYIGNLCGGLCYIAKKSLSFMDMMEVCLKVNQNP 76
           PKV PSYGGWIKV+ + +  WN+E+F  IG+ CGG   +AK++    D++E  +++  N 
Sbjct: 369 PKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNY 428

Query: 77  FGFLSAKIQL 86
            GF+ A I+L
Sbjct: 429 SGFIPAFIKL 438

The following BLAST results are available for this feature:
BLAST of ClCG08G003110 vs. NCBI nr
Match NameE-valueIdentityDescription
QWT43305.18.0e-1951.58kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris][more]
KAA0039967.11.5e-0945.71hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa][more]
KAA0040039.11.5e-0945.71hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa][more]
TYK24535.11.5e-0945.71hypothetical protein E5676_scaffold266G00770 [Cucumis melo var. makuwa][more]
KAA0050054.12.0e-0944.29hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa][more]
BLAST of ClCG08G003110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G003110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TFK77.3e-1045.71DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DLP07.3e-1045.71DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TEK87.3e-1045.71DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7U4959.5e-1044.29DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CFS89.5e-1044.29DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of ClCG08G003110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G003110.1ClCG08G003110.1mRNA