ClCG08G002950 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G002950
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionproline-rich protein 36-like
LocationCG_Chr08: 7125364 .. 7125744 (+)
RNA-Seq ExpressionClCG08G002950
SyntenyClCG08G002950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGGCGGTCAGGGAACGCTAGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGGTCAGACAAACTAAGATCAAAGTTGGGGACTTCTAATTTTCCTTTAGGTTTTGGATTATTTCTTATTTATTTTTCTTTTTTCAGACAAACTAAGATGGGCACTGTCGAGCCCATCACTCTTTTGCAAAGAGAGGGCAAGTAGTGAGAACAAGGTTAATGTCAGAGTGATTGATGAATTCCAGATAATTTTGATTTGA

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGGCGGTCAGGGAACGCTAGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGACAAACTAAGATGGGCACTGTCGAGCCCATCACTCTTTTGCAAAGAGAGGGCAAGTAGTGAGAACAAGGTTAATGTCAGAGTGATTGATGAATTCCAGATAATTTTGATTTGA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAGCAACAACGAGAATGTCAAAGCTCGCCGCCCACGGCGGTCAGGGAACGCTAGCGCTGGCGGTCAGATTAACCGTCTTTCTCGATCAGCTCGAAGGACCGGCGGCAGTAAAACCAACCGTGGTCCTCCGCCGAAGATGAGCACTGGCGGCGGCGACAAACTAAGATGGGCACTGTCGAGCCCATCACTCTTTTGCAAAGAGAGGGCAAGTAGTGAGAACAAGGTTAATGTCAGAGTGATTGATGAATTCCAGATAATTTTGATTTGA

Protein sequence

MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRLSRSARRTGGSKTNRGPPPKMSTGGGDKLRWALSSPSLFCKERASSENKVNVRVIDEFQIILI
Homology
BLAST of ClCG08G002950 vs. NCBI nr
Match: XP_022930152.1 (proline-rich protein 36-like [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-07
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRLSRSARRTGGSKTNRGPPPKMSTGG 60
          ME SSS+LQ SNN+N KA   RR  N   G QINRLS  +RR  G+ TNRGPPPK STGG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of ClCG08G002950 vs. NCBI nr
Match: KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-06
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NA  G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

BLAST of ClCG08G002950 vs. NCBI nr
Match: KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 42/64 (65.62%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 1  MESSSSSLQKSNN--ENVKARRPRRSGNASAGGQIN-RLSRSARRTGGSKTNRGPPPKMS 60
          MESSSSSLQK NN   N KA R R + NA  G  IN R SR  RRT GSK NR PPPK S
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGG 62
          TGGG
Sbjct: 61 TGGG 64

BLAST of ClCG08G002950 vs. ExPASy TrEMBL
Match: A0A6J1EPK7 (proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-07
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRLSRSARRTGGSKTNRGPPPKMSTGG 60
          ME SSS+LQ SNN+N KA   RR  N   G QINRLS  +RR  G+ TNRGPPPK STGG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of ClCG08G002950 vs. ExPASy TrEMBL
Match: A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MESSSSSLQKSNNENVKARRPRRSGNASAGGQINRL-SRSARRTGGSKTNRGPPPKMSTG 60
          MESSSSSL+K+NN+N KA R R S NA  G QINR  SR  +R   SKTNR PPPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

BLAST of ClCG08G002950 vs. ExPASy TrEMBL
Match: A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.7e-05
Identity = 42/64 (65.62%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 1  MESSSSSLQKSNN--ENVKARRPRRSGNASAGGQIN-RLSRSARRTGGSKTNRGPPPKMS 60
          MESSSSSLQK NN   N KA R R + NA  G  IN R SR  RRT GSK NR PPPK S
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGG 62
          TGGG
Sbjct: 61 TGGG 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022930152.16.6e-0763.93proline-rich protein 36-like [Cucurbita moschata][more]
KAE8646590.15.6e-0666.13hypothetical protein Csa_005634, partial [Cucumis sativus][more]
KAA0048493.11.4e-0465.63hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EPK73.2e-0763.93proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 ... [more]
A0A0A0KAN32.7e-0666.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1[more]
A0A5D3DY746.7e-0565.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G002950.2ClCG08G002950.2mRNA