ClCG08G002740 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G002740
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	ribosome maturation protein SBDS
Location	CG_Chr08: 6118715 .. 6122222 (+)
RNA-Seq Expression	ClCG08G002740
Synteny	ClCG08G002740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAACCCGTTAGGCTTTATATAAATAAACAAAGTGGAGAGACAAAACTTCTTCGTCTAAAATCAGTATTCTTTTTAAATCCAATCGCCAAATTTAACGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGTAAGCTCCCTTAAACCCTATCGTTTCTCTCTTCAATTCTCGGATTTTCTCTTGTTGTTTGATGGGTTCTATGCTTTCAAGACGGTATAGCTTTGATGTTAGGACGGAAATTACATCCAATTTAAGATTCATTAGTTGAATGGAGGATCCTCTTGGCCAACGGATTAGGAAAAGCCTCTTCTAATTGCTAGTGACTACTTTAGTTGGAGTGGTAAGTTATTAAAGTATATAGAGATTTTTATACAGATGACCTATTCTCAGCTCTAAATGATTGATGATCCATCCCAGAAATAAATGAAATATAATCTTTTGCTTAATTTGCGATTGGGATAGTCATGTCTATAATAGCCTCAACTCAATGACCATGTCTATTGCGATCTTCATTTTTTCCCATTTTGTCGTACTTTGTCATGAATATTGTAGTAGAGTGGAGAAAAATGAAGATTGCGACAGACATAGTCGTCGTGTGATCCCTAACGCGATACGGTAGTGTACTTTGACGTAAGCAGAAGATTAGATTTCATTTATATTTGGAGATGGGTCATTAATCATTTAGAGGCTGAGAATGGGGACTATCTGCACGAAAATCTCTAGATATGCATATAAAAAATCAGATGAACTTTGAACTTCAGGGCTCGAGTTGCAATTGCATCAAAGTACGAAGTTGTATTTTGCAGTTTTCCTTTCGTTATTCATTTTCCATCCCGATGCATACTATTTGACCTACTTTGGTACTGATTTATATTTTATTATTTGTCTTGTATGCTGTGTTGACTATGAACTTGATAATGTATGTTGTGACAGGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGGTTTGTGGAATTCCTGAATAAATGTTTTTTGTATTGTTTTTATATTGCATCTAGTACTTTATGGATAATTCTTTTTATCAGTGTATGCTTTTGTTGTCATTTCTTATGAACTGATGAGATTATCAACTTGCTGGTACTAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGTAGGTTGATACTTTTTGCTGAATGTGAGATTAACATTCTTCTGCTTTCAATTTGTATAACTCTAAATTCAAGGCCGCAATTTTCAGCTGATATTTTTTATGATATGTAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTGTGAGTCTGAGTTTTTTCATTGCAATTTTTGTTTTGCATATCTTCTCCAATTTGCTAATGATATCATCGTTTCACTCCTCCTAGAACAAGTTGAATTCTTGCTTTGATTGTTGGTTCCTGCATGGGTGTCAATGTGCCATTAGTTGCCCATTTTGGACTATGCCATGTTTGTCTGTACTATATTGCATGATAAATCCTAGGAACGAAGATTTCAGGAAGCAAACCATTTCTACCTAGCCACGAACATAGACAATTCACTTTTGTTTTTGATGTGATAAGAATTTCAAGCAAGGTCTAGGAATTTAGTTGTGCTTAAAACCAGCTAGTGTTAAGAGACATTGAAATGTGAATGTTATTTACTTATATTATTGTGTCATCGTTTCATTTTGCTGGAGTGGGGTTGAGAGAAGGAAATTATTTGAAACACTATAGTTAGGACACTAAGGTATATATATATACACATATATACATATATATGTGTATATATATAATTGCCATCATCACGGTAATCAAAGAGGTGTATGAGTACAGAGCTAGGTAATGGTAAAAGCCCTTCTATATTATACTTATCATCTGTTTGTTATGGTAAACATCTTTCTATTCATCATATTGAATGCTGTAGTTTTAAGCAGTAATCTTGGTAATGATGAATTACTTGAAGTACGCACGAGCCGTTCAGAACTATTGGTGTTCATTTATTATTAGCTAATGCTTGTTTTGCTGCCTTAGTAGTTGTTTTTATGTAGCCAAGTTTCATGATCTCTCCGGAGTAATTTCCTGTTTTTCTACATCTCTTTGTTGGGTCAAATGCGCAGTGATCAAGTTTAGACTATTAAATTGGTTATTGATTAGTAACTTCATATGTGCCCTTCTCATTAAGTACTGACAATGCTTTGCAGTAGGCTGCCTTCCATAATACAGGCACTGGGAACTGAGTTTTTGTGTTTGGTTGTTGCAACAGATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGAACTACTGGTGTGTTATGCTTTGTTGAATTGGTATGAGCTTTTTGTACTTCAGTTTTGGTGCTAAATAGTAAGAAACAATACTGCAATTGGCTAGTTATAGCTTACACATATTGGACGGTCTCATGGCATGTCACATGCTGCCACAATCGCTAAGTTTTCATAGTTTTCTTCGTTTTAATGTTGAAGTGATGTTTAATATTGAATCAAGATCATGTGTATACATTTTGCCTTTAAGATATATATACAGGAAGTAACCTTTTTGACTTTGTACTCGAATAACCTGTAATGCAACTATGCACGGAATGCAAATCAG

mRNA sequence

GTAAAACCCGTTAGGCTTTATATAAATAAACAAAGTGGAGAGACAAAACTTCTTCGTCTAAAATCAGTATTCTTTTTAAATCCAATCGCCAAATTTAACGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGAACTACTGGTGTGTTATGCTTTGTTGAATTGGTATGAGCTTTTTGTACTTCAGTTTTGGTGCTAAATAGTAAGAAACAATACTGCAATTGGCTAGTTATAGCTTACACATATTGGACGGTCTCATGGCATGTCACATGCTGCCACAATCGCTAAGTTTTCATAGTTTTCTTCGTTTTAATGTTGAAGTGATGTTTAATATTGAATCAAGATCATGTGTATACATTTTGCCTTTAAGATATATATACAGGAAGTAACCTTTTTGACTTTGTACTCGAATAACCTGTAATGCAACTATGCACGGAATGCAAATCAG

Coding sequence (CDS)

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA

Protein sequence

MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF

Homology

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BLAST of ClCG08G002740 vs. NCBI nr
Match: XP_038886377.1 (ribosome maturation protein SBDS [Benincasa hispida])

HSP 1 Score: 690.6 bits (1781), Expect = 6.9e-195
Identity = 345/359 (96.10%), Postives = 352/359 (98.05%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AF TDDQ EICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY+V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF
Sbjct: 181 PEQNFPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQYDDDYEN+ELPPRQVKE ESAIPQL+EALQKQTISVN ENA KEGKRC
Sbjct: 241 CLHEEGDTNVDQYDDDYENVELPPRQVKESESAIPQLNEALQKQTISVNSENAMKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+VVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMG++ESDLKEYSF
Sbjct: 301 STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDTESDLKEYSF 359

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BLAST of ClCG08G002740 vs. NCBI nr
Match: XP_008466694.1 (PREDICTED: ribosome maturation protein SBDS [Cucumis melo] >KAA0059838.1 ribosome maturation protein SBDS [Cucumis melo var. makuwa] >TYK24793.1 ribosome maturation protein SBDS [Cucumis melo var. makuwa])

HSP 1 Score: 682.6 bits (1760), Expect = 1.9e-192
Identity = 337/359 (93.87%), Postives = 351/359 (97.77%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+SNDQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+EL PRQ+KE ES+IPQLSEALQKQTISVN +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

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BLAST of ClCG08G002740 vs. NCBI nr
Match: XP_004146781.1 (ribosome maturation protein SBDS [Cucumis sativus] >KGN47741.1 hypothetical protein Csa_004177 [Cucumis sativus])

HSP 1 Score: 673.7 bits (1737), Expect = 8.8e-190
Identity = 330/359 (91.92%), Postives = 349/359 (97.21%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+LK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+R+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+S+DQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+ELPPRQ+KE +S IPQLSEALQKQTIS+N +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGD T+FREH+KSEWHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

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BLAST of ClCG08G002740 vs. NCBI nr
Match: XP_022936066.1 (ribosome maturation protein SBDS [Cucurbita moschata] >KAG7025021.1 Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 668.7 bits (1724), Expect = 2.8e-188
Identity = 335/360 (93.06%), Postives = 346/360 (96.11%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AF TDDQ EICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLN+WSASIISNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQY-DDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKR 300
           CLHEEGDTNVDQY DDD+EN+ELPPR VKE ESAIPQLSEALQKQ ISV+G N  KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKR 300

Query: 301 CSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           CSTCN+VVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMG+SESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360

[Close]

BLAST of ClCG08G002740 vs. NCBI nr
Match: XP_023535044.1 (ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo])

HSP 1 Score: 667.9 bits (1722), Expect = 4.8e-188
Identity = 336/360 (93.33%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AF TDDQ EICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASIISND SGNQQRSIICELDPSFYRDCNPLMSELQG+FEVLSF
Sbjct: 181 PEQNFPSLLDKLNAWSASIISNDPSGNQQRSIICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQY-DDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKR 300
           CLHEEGDTNVDQY DDD+EN+ELPPR VKE ESAIPQLSEALQKQ ISV+G N  KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKR 300

Query: 301 CSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           CSTCN+VVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMG+SESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360

[Close]

BLAST of ClCG08G002740 vs. ExPASy Swiss-Prot
Match: P70122 (Ribosome maturation protein SBDS OS=Mus musculus OX=10090 GN=Sbds PE=1 SV=4)

HSP 1 Score: 253.8 bits (647), Expect = 2.8e-66
Identity = 135/247 (54.66%), Postives = 176/247 (71.26%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM-SELQGR--FEVLSF 243
               L +KL      + S D S  QQ  I+C +DP  +R+ + L+  E +GR   EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. ExPASy Swiss-Prot
Match: Q5RK30 (Ribosome maturation protein SBDS OS=Rattus norvegicus OX=10116 GN=Sbds PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 6.3e-66
Identity = 133/247 (53.85%), Postives = 176/247 (71.26%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      + S D S  QQ  I+C +DP  +R+ + L+   ++ +G  EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. ExPASy Swiss-Prot
Match: Q3SWZ6 (Ribosome maturation protein SBDS OS=Bos taurus OX=9913 GN=SBDS PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.1e-65
Identity = 133/247 (53.85%), Postives = 175/247 (70.85%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      I S D    QQ  I+C +DP  +R+ + L+   ++ +G  EVLS 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. ExPASy Swiss-Prot
Match: Q9Y3A5 (Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4)

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-64
Identity = 131/247 (53.04%), Postives = 174/247 (70.45%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      I S D    QQ  I+C +DP  +R+ + L+   ++ +G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. ExPASy Swiss-Prot
Match: Q5RAZ2 (Ribosome maturation protein SBDS OS=Pongo abelii OX=9601 GN=SBDS PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-64
Identity = 131/247 (53.04%), Postives = 174/247 (70.45%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK +DL  AFGTDDQ EIC +IL +GE+Q++ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQ 183
           PETKRPYT+ +IER +++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSF 243
               L +KL      I S D    QQ  I+C +DP  +R+ + L+   ++ +G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of ClCG08G002740 vs. ExPASy TrEMBL
Match: A0A5A7UXA4 (Ribosome maturation protein SBDS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00400 PE=3 SV=1)

HSP 1 Score: 682.6 bits (1760), Expect = 9.1e-193
Identity = 337/359 (93.87%), Postives = 351/359 (97.77%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+SNDQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+EL PRQ+KE ES+IPQLSEALQKQTISVN +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of ClCG08G002740 vs. ExPASy TrEMBL
Match: A0A1S3CRW0 (ribosome maturation protein SBDS OS=Cucumis melo OX=3656 GN=LOC103504043 PE=3 SV=1)

HSP 1 Score: 682.6 bits (1760), Expect = 9.1e-193
Identity = 337/359 (93.87%), Postives = 351/359 (97.77%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+SNDQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+EL PRQ+KE ES+IPQLSEALQKQTISVN +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of ClCG08G002740 vs. ExPASy TrEMBL
Match: A0A0A0KIY6 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G397690 PE=3 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.2e-190
Identity = 330/359 (91.92%), Postives = 349/359 (97.21%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+LK AFGTDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+R+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY+V
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLNAWSASI+S+DQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRC 300
           CLHEEGDTNVDQY+DDYEN+ELPPRQ+KE +S IPQLSEALQKQTIS+N +NAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300

Query: 301 STCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           STCN+ VGD T+FREH+KSEWHKHNVKRKTKNLPPLTEEECTVELAMG+SESDLKEYSF
Sbjct: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of ClCG08G002740 vs. ExPASy TrEMBL
Match: A0A6J1F6G6 (ribosome maturation protein SBDS OS=Cucurbita moschata OX=3662 GN=LOC111442780 PE=3 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.4e-188
Identity = 335/360 (93.06%), Postives = 346/360 (96.11%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AF TDDQ EICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLN+WSASIISNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQY-DDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKR 300
           CLHEEGDTNVDQY DDD+EN+ELPPR VKE ESAIPQLSEALQKQ ISV+G N  KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKR 300

Query: 301 CSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           CSTCN+VVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMG+SESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360

[Close]

BLAST of ClCG08G002740 vs. ExPASy TrEMBL
Match: A0A6J1IK36 (ribosome maturation protein SBDS OS=Cucurbita maxima OX=3661 GN=LOC111474460 PE=3 SV=1)

HSP 1 Score: 667.2 bits (1720), Expect = 4.0e-188
Identity = 333/360 (92.50%), Postives = 346/360 (96.11%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKDLK AF TDDQ EICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           TFNPETKRPYTISMIERL+REIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           PEQN PSLLDKLN+WSASIISNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSF
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSF 240

Query: 241 CLHEEGDTNVDQY-DDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKR 300
           CLHEEGDTNVDQY DDD+EN+ELPPR VKE ESAIPQLSEALQKQ ISV+G N  KEGKR
Sbjct: 241 CLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTQKEGKR 300

Query: 301 CSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 360
           CSTCN+VVGDA QFREHHKSEWHKHN+KRKTKNLPPLTEEEC VE+A+G+SESDLKEYSF
Sbjct: 301 CSTCNVVVGDAIQFREHHKSEWHKHNIKRKTKNLPPLTEEECMVEIAIGDSESDLKEYSF 360

[Close]

BLAST of ClCG08G002740 vs. TAIR 10
Match: AT1G43860.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 455.3 bits (1170), Expect = 4.6e-128
Identity = 227/372 (61.02%), Postives = 288/372 (77.42%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60
           MS++LVQP+GQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAK+KDL  +FG+DD  +IC+ IL++GELQ+AGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVV 180
           T NPET+RPYTISM+ERL+ EIHFAVDP+ +SKKQAL+VI ELQK FPIKRSPMR+R  V
Sbjct: 121 TINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKRSPMRLRLTV 180

Query: 181 PEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSF 240
           P QN PSLL+KL  W  S++S D+SG Q  S +CE++P  +R+C+  +  +QGR E+L+ 
Sbjct: 181 PVQNFPSLLEKLKEWDGSVVSKDESGTQM-STVCEMEPGLFRECDSHVRSIQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYDDDYENMELPPR--------QVKEPESAIPQLSEALQKQTISVNGE- 300
            +H EGDT++D Y D++++M L           + K+    + +LS+ LQKQ IS     
Sbjct: 241 SVHAEGDTSMDHY-DEHDDMALQTHKPLLPAETETKDLTDPVVELSKKLQKQEISTTDNI 300

Query: 301 ----NAPKEGKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAM 360
                  K+G +CSTCN  VG+A Q+REH KS+WHKHN+KRKT+ LPP++ +EC  E+ M
Sbjct: 301 KQEGGEEKKGTKCSTCNTFVGEAKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEIDM 360

[Close]

BLAST of ClCG08G002740 vs. TAIR 10
Match: AT2G24500.1 (Zinc finger protein 622 )

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 18/42 (42.86%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 297 GKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE 339
           G  C++CN    D  + + H+KSEWH++N+KRK   +P +TE
Sbjct: 3   GLACNSCNKDFEDDAEQKFHYKSEWHRYNLKRKIAGVPGVTE 44

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BLAST of ClCG08G002740 vs. TAIR 10
Match: AT4G31420.1 (Zinc finger protein 622 )

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 297 GKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE 339
           G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Sbjct: 3   GLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTE 44

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BLAST of ClCG08G002740 vs. TAIR 10
Match: AT4G31420.2 (Zinc finger protein 622 )

HSP 1 Score: 43.9 bits (102), Expect = 3.2e-04
Identity = 17/42 (40.48%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 297 GKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE 339
           G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Sbjct: 3   GLTCNACNMEFKDEEERNLHYKSDWHRYNLKRKVAGVPGVTE 44

The following BLAST results are available for this feature:

BLAST of ClCG08G002740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886377.1	6.9e-195	96.10	ribosome maturation protein SBDS [Benincasa hispida]	[more]
XP_008466694.1	1.9e-192	93.87	PREDICTED: ribosome maturation protein SBDS [Cucumis melo] >KAA0059838.1 ribosom...	[more]
XP_004146781.1	8.8e-190	91.92	ribosome maturation protein SBDS [Cucumis sativus] >KGN47741.1 hypothetical prot...	[more]
XP_022936066.1	2.8e-188	93.06	ribosome maturation protein SBDS [Cucurbita moschata] >KAG7025021.1 Ribosome mat...	[more]
XP_023535044.1	4.8e-188	93.33	ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG08G002740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P70122	2.8e-66	54.66	Ribosome maturation protein SBDS OS=Mus musculus OX=10090 GN=Sbds PE=1 SV=4	[more]
Q5RK30	6.3e-66	53.85	Ribosome maturation protein SBDS OS=Rattus norvegicus OX=10116 GN=Sbds PE=2 SV=1	[more]
Q3SWZ6	1.1e-65	53.85	Ribosome maturation protein SBDS OS=Bos taurus OX=9913 GN=SBDS PE=2 SV=1	[more]
Q9Y3A5	2.0e-64	53.04	Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4	[more]
Q5RAZ2	2.0e-64	53.04	Ribosome maturation protein SBDS OS=Pongo abelii OX=9601 GN=SBDS PE=2 SV=1	[more]

BLAST of ClCG08G002740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXA4	9.1e-193	93.87	Ribosome maturation protein SBDS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CRW0	9.1e-193	93.87	ribosome maturation protein SBDS OS=Cucumis melo OX=3656 GN=LOC103504043 PE=3 SV...	[more]
A0A0A0KIY6	4.2e-190	91.92	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G397690 P...	[more]
A0A6J1F6G6	1.4e-188	93.06	ribosome maturation protein SBDS OS=Cucurbita moschata OX=3662 GN=LOC111442780 P...	[more]
A0A6J1IK36	4.0e-188	92.50	ribosome maturation protein SBDS OS=Cucurbita maxima OX=3661 GN=LOC111474460 PE=...	[more]

BLAST of ClCG08G002740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43860.1	4.6e-128	61.02	sequence-specific DNA binding transcription factors	[more]
AT2G24500.1	3.2e-04	42.86	Zinc finger protein 622	[more]
AT4G31420.1	3.2e-04	40.48	Zinc finger protein 622	[more]
AT4G31420.2	3.2e-04	40.48	Zinc finger protein 622	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 295..329 e-value: 0.0056 score: 25.9
IPR019783	Ribosome maturation protein Sdo1/SBDS, N-terminal	PFAM	PF01172	SBDS	coord: 16..102 e-value: 2.8E-28 score: 97.8
None	No IPR available	GENE3D	3.30.70.240		coord: 174..251 e-value: 8.6E-12 score: 46.9
None	No IPR available	PANTHER	PTHR10927:SF3	BNAANNG06530D PROTEIN	coord: 1..359
IPR036786	Ribosome maturation protein SBDS, N-terminal domain superfamily	GENE3D	3.30.1250.10		coord: 1..96 e-value: 7.3E-39 score: 133.7
IPR036786	Ribosome maturation protein SBDS, N-terminal domain superfamily	SUPERFAMILY	89895	FYSH domain	coord: 13..96
IPR037188	Ribosome maturation protein Sdo1/SBDS, central domain superfamily	GENE3D	1.10.10.900		coord: 100..172 e-value: 1.6E-29 score: 103.7
IPR037188	Ribosome maturation protein Sdo1/SBDS, central domain superfamily	SUPERFAMILY	109728	Hypothetical protein AF0491, middle domain	coord: 98..171
IPR018978	Ribosome maturation protein Sdo1/SBDS, C-terminal	PFAM	PF09377	SBDS_C	coord: 110..225 e-value: 4.3E-27 score: 94.4
IPR002140	Ribosome maturation protein Sdo1/SBDS	TIGRFAM	TIGR00291	TIGR00291	coord: 13..231 e-value: 3.8E-51 score: 171.7
IPR039100	Ribosome maturation protein Sdo1/SBDS-like	PANTHER	PTHR10927	RIBOSOME MATURATION PROTEIN SBDS	coord: 1..359
IPR018023	Ribosome maturation protein SBDS, conserved site	PROSITE	PS01267	UPF0023	coord: 46..65
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 300..322
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 288..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002740.1	ClCG08G002740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042256	mature ribosome assembly
biological_process	GO:0042254	ribosome biogenesis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding