ClCG08G002638 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G002638
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	pentatricopeptide repeat-containing protein At1g19720-like
Location	CG_Chr08: 5833510 .. 5834270 (-)
RNA-Seq Expression	ClCG08G002638
Synteny	ClCG08G002638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGAAAATGCAATTCAAGAAGCTAATTAGACATCATACCAGTAGTAATTTGCTTCAGAAGGGCAGATCTTAGGGTTTTTCCCTTTGTTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGAGAAACGCTTGATTGTTAACCAGAATGTTCCGGTTCTTCTTCCTGTTATCGATTGTACTCTCTGCCGAACGCTAGAATTTGAAGGTAATCCTTTTTAAACTGATAATGGAGTATTTGGCTCTACTTTATTTTCATTCTCCCACCTTCATTATTTGCCTGTCTCTTTTATAGACTTTCCCAGTTCCACTACTCTCTTTATCGTGTTTTCTCTCTTTCCTCCTGCCATTTTTATCCTTAATTGCGATTCTTAAATATGGATTTGACCATCTAAACAGTTGAAACTTTGAAAGCAAAATCATCAGACGAACACAACCCAACTAATGAAAAATATCAAACTCAACCCGTAGTCGAATTCAATGTCTATGAACTTCATGACAAGTAATGCAGCACAAAGTAGCAGTTGAACTCTTCTGTCAAATGCTAGAAGAAGGCATAAAACCAAGTTCAGCTACCTTTTCGATACTTCTCCCTGTCTTAGCTGAAAGGGAAGATTTGAAAACAAGAAGACAGCTACATTCCTATATCATCAAGAGTCAGCACCTTGAATCATGCAACGACCTTGCAAATGTCTTAAGTTCAGACAATTTTGATGGAGGAGTTTTGCTTCATGGAATATAA

mRNA sequence

ATGGATCTTAGGGTTTTTCCCTTTGTTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGAGAAACGCTTGATTGTTAACCAGAATGTTCCGGTTCTTCTTCCTGTTATCGATTGTACTCTCTGCCGAACGCTAGAATTTGAAGTAATGCAGCACAAAGTAGCAGTTGAACTCTTCTGTCAAATGCTAGAAGAAGGCATAAAACCAAGTTCAGCTACCTTTTCGATACTTCTCCCTGTCTTAGCTGAAAGGGAAGATTTGAAAACAAGAAGACAGCTACATTCCTATATCATCAAGAGTCAGCACCTTGAATCATGCAACGACCTTGCAAATGTCTTAAGTTCAGACAATTTTGATGGAGGAGTTTTGCTTCATGGAATATAA

Coding sequence (CDS)

ATGGATCTTAGGGTTTTTCCCTTTGTTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGAGAAACGCTTGATTGTTAACCAGAATGTTCCGGTTCTTCTTCCTGTTATCGATTGTACTCTCTGCCGAACGCTAGAATTTGAAGTAATGCAGCACAAAGTAGCAGTTGAACTCTTCTGTCAAATGCTAGAAGAAGGCATAAAACCAAGTTCAGCTACCTTTTCGATACTTCTCCCTGTCTTAGCTGAAAGGGAAGATTTGAAAACAAGAAGACAGCTACATTCCTATATCATCAAGAGTCAGCACCTTGAATCATGCAACGACCTTGCAAATGTCTTAAGTTCAGACAATTTTGATGGAGGAGTTTTGCTTCATGGAATATAA

Protein sequence

MDLRVFPFVRIFINNRNASCYLLLDEKRLIVNQNVPVLLPVIDCTLCRTLEFEVMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

Homology

[Close]

BLAST of ClCG08G002638 vs. NCBI nr
Match: KAA0064811.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 54  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCND 113
           +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES ND
Sbjct: 597 IMQHEVAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRND 656

Query: 114 LANVLSSDNFDGGVLLHGI 133
           LANVLSSDNFD GVLLHGI
Sbjct: 657 LANVLSSDNFDVGVLLHGI 675

[Close]

BLAST of ClCG08G002638 vs. NCBI nr
Match: XP_008445371.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 54  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCND 113
           +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES ND
Sbjct: 597 IMQHEVAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRND 656

Query: 114 LANVLSSDNFDGGVLLHGI 133
           LANVLSSDNFD GVLLHGI
Sbjct: 657 LANVLSSDNFDVGVLLHGI 675

[Close]

BLAST of ClCG08G002638 vs. NCBI nr
Match: XP_038884429.1 (pentatricopeptide repeat-containing protein At1g19720-like [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 54  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCND 113
           +MQ K+AVELFCQML EG+KPSS TFSILLP LAE+ DLK RRQLHSYIIKS++LESCND
Sbjct: 602 IMQPKMAVELFCQMLVEGLKPSSVTFSILLPALAEKADLKARRQLHSYIIKSRYLESCND 661

Query: 114 LANVLSSDNFDGGVLLHGI 133
           LANVLSSDNFDGGVLLHGI
Sbjct: 662 LANVLSSDNFDGGVLLHGI 680

[Close]

BLAST of ClCG08G002638 vs. NCBI nr
Match: XP_004146805.1 (pentatricopeptide repeat-containing protein At1g19720 [Cucumis sativus] >KGN47749.1 hypothetical protein Csa_003552 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-28
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 55  MQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDL 114
           MQHK+AVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDL
Sbjct: 600 MQHKMAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRNDL 659

Query: 115 ANVLSSDNFDGGVLLHGI 133
           ANVLSSDN D GVLLHGI
Sbjct: 660 ANVLSSDNVDVGVLLHGI 677

[Close]

BLAST of ClCG08G002638 vs. NCBI nr
Match: XP_023546745.1 (pentatricopeptide repeat-containing protein At1g19720-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 54  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCND 113
           +MQ K+AVELFCQML EGIKPSS TFSIL P LA R DL TRRQLHSYIIKSQ + SCND
Sbjct: 561 IMQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-RTDLITRRQLHSYIIKSQLVISCND 620

Query: 114 LANVLSSDNFDGGVLLHG 132
           LANVLSS+ FDGGVLLHG
Sbjct: 621 LANVLSSNEFDGGVLLHG 637

[Close]

BLAST of ClCG08G002638 vs. ExPASy TrEMBL
Match: A0A5A7VGH4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001190 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 54  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCND 113
           +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES ND
Sbjct: 597 IMQHEVAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRND 656

Query: 114 LANVLSSDNFDGGVLLHGI 133
           LANVLSSDNFD GVLLHGI
Sbjct: 657 LANVLSSDNFDVGVLLHGI 675

[Close]

BLAST of ClCG08G002638 vs. ExPASy TrEMBL
Match: A0A1S3BDB0 (pentatricopeptide repeat-containing protein At1g19720-like OS=Cucumis melo OX=3656 GN=LOC103488425 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 54  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCND 113
           +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES ND
Sbjct: 597 IMQHEVAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRND 656

Query: 114 LANVLSSDNFDGGVLLHGI 133
           LANVLSSDNFD GVLLHGI
Sbjct: 657 LANVLSSDNFDVGVLLHGI 675

[Close]

BLAST of ClCG08G002638 vs. ExPASy TrEMBL
Match: A0A0A0KFW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399730 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 55  MQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDL 114
           MQHK+AVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDL
Sbjct: 600 MQHKMAVELFCQMLVEGIKPSSATFSILLPALSERADLKVRRQLHSYIIKSQHLESRNDL 659

Query: 115 ANVLSSDNFDGGVLLHGI 133
           ANVLSSDN D GVLLHGI
Sbjct: 660 ANVLSSDNVDVGVLLHGI 677

[Close]

BLAST of ClCG08G002638 vs. ExPASy TrEMBL
Match: A0A6J1K3Z4 (pentatricopeptide repeat-containing protein At1g19720-like OS=Cucurbita maxima OX=3661 GN=LOC111492109 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 54  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCND 113
           VMQ K+AVELFCQML EGIKPSS +FSILLP LA R DL  RRQLHSYIIKSQ +ESC+D
Sbjct: 562 VMQPKMAVELFCQMLVEGIKPSSDSFSILLPALA-RTDLIMRRQLHSYIIKSQLVESCDD 621

Query: 114 LANVLSSDNFDGGVLLHG 132
           L+ VLSS+ FDGGV+LHG
Sbjct: 622 LSYVLSSNEFDGGVMLHG 638

[Close]

BLAST of ClCG08G002638 vs. ExPASy TrEMBL
Match: A0A6J1BQ73 (pentatricopeptide repeat-containing protein At1g19720-like OS=Momordica charantia OX=3673 GN=LOC111004749 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 48/68 (70.59%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 56  QHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLA 115
           Q KVA+ELFC+ML EGIKPSS T SIL P L    DLK RRQLHSYI KSQ LE CNDLA
Sbjct: 612 QPKVAIELFCEMLVEGIKPSSVTLSILPPALDLGVDLKVRRQLHSYITKSQLLEWCNDLA 671

Query: 116 NVLSSDNF 124
           NV S   F
Sbjct: 672 NVSSFGKF 679

[Close]

BLAST of ClCG08G002638 vs. TAIR 10
Match: AT5G08490.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 7.6e-04
Identity = 21/62 (33.87%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 60  AVELFCQMLEEG-IKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVL 119
           A +LF  ++ +G + P S T   +LPV A+  DL + +++HSYI++  +L     + N L
Sbjct: 313 AFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNAL 372

Query: 120 SS 121
            S
Sbjct: 373 IS 374

The following BLAST results are available for this feature:

BLAST of ClCG08G002638 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064811.1	4.9e-29	88.61	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008445371.1	4.9e-29	88.61	PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis m...	[more]
XP_038884429.1	1.4e-28	84.81	pentatricopeptide repeat-containing protein At1g19720-like [Benincasa hispida]	[more]
XP_004146805.1	4.1e-28	88.46	pentatricopeptide repeat-containing protein At1g19720 [Cucumis sativus] >KGN4774...	[more]
XP_023546745.1	5.2e-23	80.77	pentatricopeptide repeat-containing protein At1g19720-like [Cucurbita pepo subsp...	[more]

BLAST of ClCG08G002638 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G002638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGH4	2.4e-29	88.61	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BDB0	2.4e-29	88.61	pentatricopeptide repeat-containing protein At1g19720-like OS=Cucumis melo OX=36...	[more]
A0A0A0KFW8	2.0e-28	88.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399730 PE=4 SV=1	[more]
A0A6J1K3Z4	1.4e-21	76.92	pentatricopeptide repeat-containing protein At1g19720-like OS=Cucurbita maxima O...	[more]
A0A6J1BQ73	1.6e-14	70.59	pentatricopeptide repeat-containing protein At1g19720-like OS=Momordica charanti...	[more]

BLAST of ClCG08G002638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08490.1	7.6e-04	33.87	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 32..125 e-value: 4.0E-6 score: 28.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002638.1	ClCG08G002638.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding