ClCG08G002520 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G002520
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	E3 ubiquitin-protein ligase RNF170
Location	CG_Chr08: 5337726 .. 5338254 (+)
RNA-Seq Expression	ClCG08G002520
Synteny	ClCG08G002520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAGAAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGTCTGGATGGTCGAACCAGCGAAAGGACGGCGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATGGAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGTTTATATATAGTTTGCTATAACATGGTTATAGCTTTATGTTACTTACTGATCAGGCCACATCAAAGAAAGTCATTACAAGGGAAGAAGCTGGAAAGAAGAAAGTCATTTCAAGCAACAAAGTTTAG

mRNA sequence

ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAGAAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGTCTGGATGGTCGAACCAGCGAAAGGACGGCGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATGGAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGCCACATCAAAGAAAGTCATTACAAGGGAAGAAGCTGGAAAGAAGAAAGTCATTTCAAGCAACAAAGTTTAG

Coding sequence (CDS)

ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAGAAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGTCTGGATGGTCGAACCAGCGAAAGGACGGCGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATGGAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGCCACATCAAAGAAAGTCATTACAAGGGAAGAAGCTGGAAAGAAGAAAGTCATTTCAAGCAACAAAGTTTAG

Protein sequence

MDNMEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSGYRTPDRTQTRRDQSDRNSGLSATKSGWSNQRKDGVAACTAQATAAATWVEDRRLLQGERKMEGTSGQPSREDNLEDWLKIVWARKATSKKVITREEAGKKKVISSNKV

Homology

[Close]

BLAST of ClCG08G002520 vs. NCBI nr
Match: XP_038681488.1 (E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii] >XP_038681489.1 E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii] >XP_038681490.1 E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii] >XP_038681491.1 E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii] >XP_038681492.1 E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii] >XP_038681493.1 E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii] >KAF5732793.1 E3 ubiquitin-protein ligase [Tripterygium wilfordii])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 31/46 (67.39%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          ME  LV DI SICHG FNTP QANCSH WFCGN    C  LV H G
Sbjct: 1  MEEPLVNDICSICHGSFNTPCQANCSH-WFCGN----CILLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. NCBI nr
Match: XP_007020133.1 (PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X1 [Theobroma cacao] >EOY17358.1 RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 [Theobroma cacao])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 29/46 (63.04%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MEGPPVNDCCSICHGSFNVPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. NCBI nr
Match: XP_007020134.1 (PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X3 [Theobroma cacao] >EOY17359.1 RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 2 [Theobroma cacao])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 29/46 (63.04%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MEGPPVNDCCSICHGSFNVPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. NCBI nr
Match: XP_021288892.1 (E3 ubiquitin-protein ligase RNF170-like [Herrania umbratica] >XP_021288893.1 E3 ubiquitin-protein ligase RNF170-like [Herrania umbratica] >XP_021288894.1 E3 ubiquitin-protein ligase RNF170-like [Herrania umbratica])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 29/46 (63.04%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MEGPPVNDCCSICHGSFNVPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. NCBI nr
Match: XP_017981892.1 (PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X2 [Theobroma cacao])

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-04
Identity = 29/46 (63.04%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MEGPPVNDCCSICHGSFNVPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. ExPASy TrEMBL
Match: A0A7J7CF81 (E3 ubiquitin-protein ligase RNF170 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW17G00325 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.7e-06
Identity = 31/46 (67.39%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          ME  LV DI SICHG FNTP QANCSH WFCGN    C  LV H G
Sbjct: 1  MEEPLVNDICSICHGSFNTPCQANCSH-WFCGN----CILLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. ExPASy TrEMBL
Match: A0A6J1AQX1 (E3 ubiquitin-protein ligase RNF170 OS=Herrania umbratica OX=108875 GN=LOC110420057 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 29/46 (63.04%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MEGPPVNDCCSICHGSFNVPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. ExPASy TrEMBL
Match: A0A061FS55 (E3 ubiquitin-protein ligase RNF170 OS=Theobroma cacao OX=3641 GN=TCM_036509 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 29/46 (63.04%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MEGPPVNDCCSICHGSFNVPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. ExPASy TrEMBL
Match: A0A061FKC6 (E3 ubiquitin-protein ligase RNF170 OS=Theobroma cacao OX=3641 GN=TCM_036509 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 29/46 (63.04%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MEGPPVNDCCSICHGSFNVPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. ExPASy TrEMBL
Match: A0A6A1UWG3 (RING-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR8G027404 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 27/46 (58.70%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 4  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          M+G L  D  S+CHG FN P QANCSH WFCGN    C  LV H G
Sbjct: 1  MDGPLANDCCSVCHGSFNIPCQANCSH-WFCGN----CIMLVWHHG 41

[Close]

BLAST of ClCG08G002520 vs. TAIR 10
Match: AT1G22510.1 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-05
Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 11 DIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          ++ SICHG FN P Q+NCSH WFCGN    C  LV   G
Sbjct: 8  ELCSICHGHFNAPCQSNCSH-WFCGN----CIMLVWRHG 41

[Close]

BLAST of ClCG08G002520 vs. TAIR 10
Match: AT1G72175.1 (RING/U-box protein with domain of unknown function (DUF 1232) )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 22/39 (56.41%), Postives = 23/39 (58.97%), Query Frame = 0


Query: 11 DIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG 50
          D+ SICH  F  P QANCSH WFCGN    C  LV   G
Sbjct: 8  DLCSICHSHFTAPCQANCSH-WFCGN----CIMLVWRHG 41

The following BLAST results are available for this feature:

BLAST of ClCG08G002520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038681488.1	1.2e-05	67.39	E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii] >XP_038681489.1...	[more]
XP_007020133.1	1.0e-04	63.04	PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X1 [Theobroma cacao] >EOY1...	[more]
XP_007020134.1	1.0e-04	63.04	PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X3 [Theobroma cacao] >EOY1...	[more]
XP_021288892.1	1.0e-04	63.04	E3 ubiquitin-protein ligase RNF170-like [Herrania umbratica] >XP_021288893.1 E3 ...	[more]
XP_017981892.1	1.0e-04	63.04	PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X2 [Theobroma cacao]	[more]

BLAST of ClCG08G002520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G002520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7CF81	5.7e-06	67.39	E3 ubiquitin-protein ligase RNF170 OS=Tripterygium wilfordii OX=458696 GN=HS088_...	[more]
A0A6J1AQX1	4.8e-05	63.04	E3 ubiquitin-protein ligase RNF170 OS=Herrania umbratica OX=108875 GN=LOC1104200...	[more]
A0A061FS55	4.8e-05	63.04	E3 ubiquitin-protein ligase RNF170 OS=Theobroma cacao OX=3641 GN=TCM_036509 PE=4...	[more]
A0A061FKC6	4.8e-05	63.04	E3 ubiquitin-protein ligase RNF170 OS=Theobroma cacao OX=3641 GN=TCM_036509 PE=4...	[more]
A0A6A1UWG3	8.2e-05	58.70	RING-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR8G0274...	[more]

BLAST of ClCG08G002520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22510.1	2.8e-05	56.41	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT1G72175.1	1.1e-04	56.41	RING/U-box protein with domain of unknown function (DUF 1232)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002520.1	ClCG08G002520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity