ClCG08G002260 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G002260
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr08: 4748742 .. 4748942 (+)
RNA-Seq ExpressionClCG08G002260
SyntenyClCG08G002260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCGAAGCTGCACCAGCATTTTGGAGATGGAGCGAAGCTGCATTAACATATTTGGAGATAGAGTGAAGCTACATCAATATTTTGGAGGTGGAGTGAAGTTGCATCAACATTTCGAAGATGAAGCGAATATGCACCAACGTTTTGGAAATGTCGCGAAGCTGCACCACCATTTTGGAGATGGAGCGAAGCTGCACTAG

mRNA sequence

ATGCCGCGAAGCTGCACCAGCATTTTGGAGATGGAGCGAAGCTGCATTAACATATTTGGAGATAGAGTGAAGCTACATCAATATTTTGGAGGTGGAGTGAAGTTGCATCAACATTTCGAAGATGAAGCGAATATGCACCAACGTTTTGGAAATGTCGCGAAGCTGCACCACCATTTTGGAGATGGAGCGAAGCTGCACTAG

Coding sequence (CDS)

ATGCCGCGAAGCTGCACCAGCATTTTGGAGATGGAGCGAAGCTGCATTAACATATTTGGAGATAGAGTGAAGCTACATCAATATTTTGGAGGTGGAGTGAAGTTGCATCAACATTTCGAAGATGAAGCGAATATGCACCAACGTTTTGGAAATGTCGCGAAGCTGCACCACCATTTTGGAGATGGAGCGAAGCTGCACTAG

Protein sequence

MPRSCTSILEMERSCINIFGDRVKLHQYFGGGVKLHQHFEDEANMHQRFGNVAKLHHHFGDGAKLH
Homology
[Close]
BLAST of ClCG08G002260 vs. NCBI nr
Match: XP_038887242.1 (LWamide neuropeptides-like [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 20 GDRVKLHQYFGGGVKLHQHFEDEANMHQRFGNVAKLHHHFGDGAKLH 67
          G++ K HQYFG   KLHQ+ ED+A  HQ  G+  KLH + GD  K H
Sbjct: 52 GEKAKPHQYFGDEAKLHQYLEDKAKPHQYLGDEVKLHQYLGDETKSH 98

The following BLAST results are available for this feature:
BLAST of ClCG08G002260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887242.17.9e-0451.06LWamide neuropeptides-like [Benincasa hispida][more]
BLAST of ClCG08G002260 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G002260 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G002260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G002260.1ClCG08G002260.1mRNA