Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTAATAAGATTCAAAATTCAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAGTCAAAGCAGTTCTTGGTCAACAAAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAAGAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA
mRNA sequence
ATGTCATTAATAAGATTCAAAATTCAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAGTCAAAGCAGTTCTTGGTCAACAAAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAAGAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA
Coding sequence (CDS)
ATGTCATTAATAAGATTCAAAATTCAAAATTTTGATGGAAAGGGTGATTTTGGTCTTTGGAAGGCCAAAGTCAAAGCAGTTCTTGGTCAACAAAAGGCTCACAAGGCTCTTTTAGATTCATCTACTCTACCAAACATAGCCAAAGCTCAAGAAAAATTGGAAAGTCTTCTTGCAACCAAAGATCTTCCAAATAAAATGTTTTTGGGAGAAACTTTTTTCACATTTAAAATGGATGCCTCCAAGACTTACATAGAAAACTTGGATGAATACAAAAAGATAGTTTCAGAATTTAAAAGTCTTGGAGACAAATTGGGTGACAAAAATGAAGCCTATGTTCTATTAAACTCACTATTGGATACCTACAAGGATGTGAAGAATGCTTTGAAAATATGGCAAAGATTCGATTACAACTGA
Protein sequence
MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPNIAKAQEKLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNALKIWQRFDYN
Homology
BLAST of ClCG08G001967 vs. NCBI nr
Match:
XP_038896323.1 (uncharacterized protein LOC120084587 [Benincasa hispida])
HSP 1 Score: 174.5 bits (441), Expect = 6.4e-40
Identity = 90/148 (60.81%), Postives = 109/148 (73.65%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPNIAKAQE--------- 60
MS+ RF+++ FDGKGDFGLWKAK+KA+L QQKAH+ALL+ STL AQE
Sbjct: 1 MSIARFEVEKFDGKGDFGLWKAKIKAILDQQKAHRALLNPSTLSATMTAQEKEDWELATY 60
Query: 61 ----------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLG 120
KLE L ATKDLP+KM+L E FFTFKMD+SKT N DE+KKIV+EFK+LG
Sbjct: 61 DQETAYRIWTKLEELYATKDLPSKMYLSEKFFTFKMDSSKTLTNNFDEFKKIVAEFKTLG 120
Query: 121 DKLGDKNEAYVLLNSLLDTYKDVKNALK 130
+KL DKNEAYVL NSL ++YK++KNALK
Sbjct: 121 EKLSDKNEAYVLPNSLPESYKEIKNALK 148
BLAST of ClCG08G001967 vs. NCBI nr
Match:
XP_038882247.1 (uncharacterized protein LOC120073473 [Benincasa hispida])
HSP 1 Score: 128.6 bits (322), Expect = 4.0e-26
Identity = 66/146 (45.21%), Postives = 94/146 (64.38%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPNIAKAQE--------- 60
M+ R++I+ FDGK DF LWK K+K VLGQQKA A+ + + P A E
Sbjct: 1 MATTRYEIEKFDGKTDFELWKVKIKEVLGQQKALLAITNPAKYPETLTAAEKKTIEIVDQ 60
Query: 61 --------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDK 120
KL + KDL NK FL E FFT KMD +K+ +NL+E+K++ +F+S+GD
Sbjct: 61 PTAYDLWKKLNEIYLNKDLYNKAFLRERFFTHKMDVAKSLTDNLNEFKRLSLKFRSIGDN 120
Query: 121 LGDKNEAYVLLNSLLDTYKDVKNALK 130
+G++NEA++LLNSLL+++KDVK A+K
Sbjct: 121 IGEENEAFILLNSLLESFKDVKTAMK 146
BLAST of ClCG08G001967 vs. NCBI nr
Match:
XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])
HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPNIA-KAQE-------- 60
M+ R++I+ F+ K DF LWKAK+K VL +QKA A+ D + P I KA++
Sbjct: 1 MTTTRYEIEKFEAKTDFELWKAKIKVVLRKQKALLAITDPAKYPKILFKAEKETIESNAY 60
Query: 61 --------------------------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
KL + KDLPNK FL E FFT+KMD +K+ +
Sbjct: 61 GTIVLNVIDSVLRQIVDRPTAYALWNKLNDIYLNKDLPNKAFLRERFFTYKMDPAKSLTD 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNALK 130
NL+E+K + S+F+S+GD +G++NEA++LLNSL +T+KDVK ALK
Sbjct: 121 NLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVKTALK 164
BLAST of ClCG08G001967 vs. NCBI nr
Match:
XP_038904517.1 (uncharacterized protein LOC120090894 [Benincasa hispida])
HSP 1 Score: 122.5 bits (306), Expect = 2.9e-24
Identity = 63/146 (43.15%), Postives = 93/146 (63.70%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPN------------IAK 60
M+ R++I+ F+G DFGLWK K+KAVLGQQKA A+ D + P + K
Sbjct: 1 MATTRYEIEKFNGNTDFGLWKVKIKAVLGQQKALLAITDPAKYPETLTDVEKETIEIVDK 60
Query: 61 AQ-----EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLGDK 120
A KL + KDLPNK F + F T+KMD K+ +NL+++K++ SEFKS+GD
Sbjct: 61 ATSDALWNKLNEIYLHKDLPNKAFWRKRFLTYKMDVVKSLTDNLNKFKRLSSEFKSIGDN 120
Query: 121 LGDKNEAYVLLNSLLDTYKDVKNALK 130
+G++N+A++LLNSL +++KDV +K
Sbjct: 121 IGEENDAFILLNSLPESFKDVNTTMK 146
BLAST of ClCG08G001967 vs. NCBI nr
Match:
XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida])
HSP 1 Score: 121.3 bits (303), Expect = 6.4e-24
Identity = 68/164 (41.46%), Postives = 93/164 (56.71%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPNIAKAQE--------- 60
M+ +++I+ FD K DF L KAK+KAVLGQQKA A+ D S P E
Sbjct: 1 MATTKYEIEKFDEKIDFELRKAKIKAVLGQQKALLAITDPSKYPETLSEAEKETIESNAY 60
Query: 61 --------------------------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
KL + KD PNK FL E FFT+KMD +K+ +
Sbjct: 61 GTIILNVTDSVLRQIMDQPTVYALWNKLNEIYLNKDFPNKNFLRERFFTYKMDPTKSLTD 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNALK 130
NL+E+K++ SEF+S+GD +G++NEA++L NSL +T+KDVK ALK
Sbjct: 121 NLNEFKRLSSEFRSIGDNIGEENEAFILFNSLPETFKDVKTALK 164
BLAST of ClCG08G001967 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 37/163 (22.70%), Postives = 77/163 (47.24%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPNIAKAQE--------- 60
MS +++++ F+G F W+ +++ +L QQ HK L S P+ KA++
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 61 --------------------------KLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+LESL +K L NK++L + + M ++
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNAL 129
+L+ + ++++ +LG K+ ++++A +LLNSL +Y ++ +
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTI 163
BLAST of ClCG08G001967 vs. ExPASy TrEMBL
Match:
A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 67/164 (40.85%), Postives = 91/164 (55.49%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLP-NIAKAQ--------- 60
M+ +F+I+ FDG GDF LW ++ A+LG QKA KAL D LP + K++
Sbjct: 1 MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
EKL+SL KDLPNKMF+ E F+FK + +K E
Sbjct: 61 STLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEKLFSFKKNQNKNLDE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNALK 130
NLDE+KK+ + G+KLG +NEA +L+NS+ DTYK+VK LK
Sbjct: 121 NLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLK 164
BLAST of ClCG08G001967 vs. ExPASy TrEMBL
Match:
A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLP-NIAKAQ--------- 60
M+ RF++ F+G GDF LW+ K++A+L Q K K +LD LP NI +++
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+KLESL TK LPNK+++ E FF +KMD SK+ E
Sbjct: 61 STILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNALK 130
NLDE++KIV + ++G+K+ D+N+A +LLNSL +TY++VK A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163
BLAST of ClCG08G001967 vs. ExPASy TrEMBL
Match:
A0A5C7HX22 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012728 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 0
Query: 9 QNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLPN-------IAKAQEKLESLLATKD 68
+ FDG GDFG+W+ KVKA+L QQK +A+ D LP+ +KLESL TK
Sbjct: 24 KEFDGSGDFGIWRRKVKALLFQQKILEAIEDLEKLPDKLNDEKTACDVWKKLESLYLTKS 83
Query: 69 LPNKMFLGETFFTFKMDASKTYIENLDEYKKIVSEFKSLG--DKLGDKNEAYVLLNSLLD 128
L NK++L E F+FKMDASK +NLDE+KK++ E + G +KL D+NEA +LLNSL +
Sbjct: 84 LTNKIYLKERLFSFKMDASKCLGQNLDEFKKMIIELANAGVYEKLSDENEAIILLNSLPE 143
Query: 129 TYKDVKNALK 130
++ DVK A+K
Sbjct: 144 SFGDVKAAIK 153
BLAST of ClCG08G001967 vs. ExPASy TrEMBL
Match:
A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 65/164 (39.63%), Postives = 96/164 (58.54%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLP-NIAKAQ--------- 60
M+ RF++ F+G GDF LW+ K++A+L Q K K +LD LP NI +++
Sbjct: 1 MASTRFEVSKFNGHGDFALWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+KLESL TK LPNK+++ E FF +KMD SK E
Sbjct: 61 WTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNALK 130
NLDE++KIV + ++G+K+ D+N+A +LLNSL +TY++VK A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163
BLAST of ClCG08G001967 vs. ExPASy TrEMBL
Match:
A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 0
Query: 1 MSLIRFKIQNFDGKGDFGLWKAKVKAVLGQQKAHKALLDSSTLP-NIAKAQ--------- 60
M+ RF++ F+G GDF LW+ K++A+L Q K K +LD LP NI +++
Sbjct: 1 MASTRFEVSKFNGHGDFSLWRKKIRAILVQHKVAK-ILDEERLPDNITESEKRDMDEMAY 60
Query: 61 -------------------------EKLESLLATKDLPNKMFLGETFFTFKMDASKTYIE 120
+KLESL TK L NK+++ E FF +KMD SK+ E
Sbjct: 61 STILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEE 120
Query: 121 NLDEYKKIVSEFKSLGDKLGDKNEAYVLLNSLLDTYKDVKNALK 130
NLDE++KIV + ++G+K+ D+N+A +LLNSL +TY++VK A+K
Sbjct: 121 NLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK 163
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 4.6e-09 | 22.70 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7U6R2 | 2.6e-23 | 40.85 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3DNU1 | 1.0e-22 | 39.63 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A5C7HX22 | 1.7e-22 | 49.23 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012728 PE=4 SV=1 | [more] |
A0A5A7U2U7 | 1.7e-22 | 39.63 | Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... | [more] |
A0A5A7UB25 | 1.4e-21 | 39.02 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... | [more] |
Match Name | E-value | Identity | Description | |