ClCG08G001960 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G001960
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Pectin lyase-like superfamily protein
Location	CG_Chr08: 4040243 .. 4051165 (+)
RNA-Seq Expression	ClCG08G001960
Synteny	ClCG08G001960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGTCAGGGGGTGCCGAAAACCTAGTTCTTGATTTTGTGAGAAGTATCTCTTGTGGGATGGTCAGAGGACCGATAGGTCTACCTTCTGATCCTTCAAAGGTAAGACTATGTGCACAAAGAGCTAAGCTTGGATGAATTGCTATGCCAGAGTGTGTCAGCAAAATAGTTTGGTATCGAGGTTAAGCTGAAATAGGAGGTTTGAGGTTATCTTTGTCATAATTGTGTTTATTAATGAATTTTACAACGTCTGTTTTTGCTTAAAGGTCGTGTGAACCTTAGTTAAATGTTGACCACTCACTAGGCTTCAAGAAACTCATCCTCTCCTTATGTTTTCCTTTTAGGTAGCAGCCGAGTTCCCATTGCTATGCGAAGTCGAGATCTATCGAGATATAATGTTATCATTTCTCATAAACAGAAACTTGTACAAAGCTAGGGCAATGTCACCTGTAAACGAACTCTATAAACAGTTGTTTAAATAAATTATGCATGTTTAATATGAAATTGGTGATAGATGTTGTAAAAGAATCCATGATTTCACATCTCTTCCTAGGTTAAAAAGGTAACTCGGGTTGGGGTATGACAGTTGCTACTTAGTCTGTAATATTGTAAATATTTGTACTTAAGACTCAACATTGTACATAAAAAGGGGTTTTAAGGAGTGGAAGTTTGTAAACATGTATCTGTTGTATGTTGGCCTATTGAATGAAAGTTTGTAAATAATGCTAATTTATCTTGGGATTTGAGCATGTTGTATGGATGAGAAATATAAACTGTTTATCAGGTGCTTGGTCATGTATTAAGGATAGTACAGGTTGACAGTATATGTCGTAAGAGGGTCGATATCTGTTGTCCTCATACCTTTTCCTAGGTTAAGAGAGTAACTTGGGAGGGGGTGTGACACAACCACTCGGCAGGAGGTCGAGAAGTCAGGCACTGTGGTGATAGGTACACTCCCAATCTTGGGACACCATGCGTTGGTGTTGTTTGATTTGGCTCATCCCATTCATTTATATCATTAGTATTTTTGAAGCATGTTATGTTAGAATTAGAGCCTTTACATTATGCATTATCAGTTTCTACTCCGTTCGAAGAAATTATGTTAGCATATGAAAAGATAAAAGCCTGTCAGGTAGAGATATCAAATCATGCACTAGATGTGAGTCTGATAATCTTAAACATGCGTGATTTTGATGTTATATTGGGCATGGATTGGTTGGCTGCTAACCACCTTAAAAAGAACCATAAGTCAAGTTCAATTGAAAATGTTTTCCATATGTCTGCAAGAGCATATACAACTATGGAGTTTAAGTATTACATGAGACAATTGGATGACCTTGCTTCGTTTATTAGACATGAGTTACAAGATGTTGGCAAATCTAAATGGGTTAGGGGCATTTTGTGGAAGAAAAAGATATTCATTGATGACAACAAACATATCTAAAAGCATGCATTCATTGTTGAAATAAGCATGTGAATTACCCGTTATTGGTCTCCTTGAACCAATTTGTAGTTTGGTTCAAAAATGGTTTTATGAACTTCATAGTCGTTGGAGTTTCAAGCGTTCCGAACTTTCCACATATATGGAGGACATGATTTGATCAGCCTTAAGGGCAGTAGGTCAATGAATGTAAGTTTTTCTTTTATAACTTATATGTATCATATTTATTATATGATTAATATTCAAATTTGTAGGTTACATTGATTGTTATCTTTCTGTAGGTATGCCCTATTAACCAACACGAATTTAAAGTTCATGACCTCACAAACCAAATTTGTTGTCAACATTCTGAATTGTACTGGTTCGTGTCAACGTCGAGACCTAGACATGATCCTGTGCTCCTATGCATGCATTGTTTTGTCTAGTAGGAACCTTCAACTGTAGTCATACCCTCATGATTTCTATCATGTTTCAAATTTAGTTCTATTATATAAGAAGGAGAGACACCCTATTGGTAATGTTGGATAGTTTACAAGCATTCATGGAGTTGGCAATGATCTAGTTCTTCCTTCTAATGTTAAACGTCTAGCTTGGAGGCCTAAGAAGAAGATGATCAAGTCTTGCTTAGAAAATAGAGCTACAGTTCGTTGTAGTTGGTATGGGAAGAGGGGTCATAACTATAGGTCCTATATGGATCCTATACATTGTTGAATCCTTATATTAGTTGTTTTTTGGACCGTTTTCAATTGTTGCGTTACGATTAATACAAACAATTATTATTGTTTTGTTTTAGGAAATTAAATGAAATGTGATTTTAATTAATATTGCATTTTTATTATCTATCTTATATATAGCTGAGGATAATATTGTCATGTGTTGCACAATTTAGAATTATAGTGTGTTTGATGTTAGTTATTGTTTATGAAAATGCAAATGCACGTTAGATTTAGATTACAAAGTATGTTAAATATTGAAAAGATGGCTATTTTAGTTTGAGAGCTTTGTATATTTGGTTTATGAGTTCCAACTCCATTAGTTACCACATCTTACAATTATAGGTTGTTGTTGTTAGTCTAACTTGTATATAAAGATGCATCTAGGTATGAATTAGTGTTAATTTGGAAATAGATTGTATGTTAAATATTTTTATAACTAATATTTGTTTGATTAGAGTTTGGAACCATTTTGTATTTTGATGCTTTTGGTAGTATTTTATCCAAAAAGTATATTGATCGTACATTAAAATATAGGATAACATATATGTATAAAGAAGATAATGTCTATTAGAATAATTTGTAAAGATACTTTTATAATAATGGGAACCGTGTCAAGTCATTTAAATGCACCTTAAATTTGAATTACAAAGTATTTTAAATATTGAAAGCATGACTATTTTAGTTTGATGGCTTAGTATATTGGGTTTATGAGTTCCAGCTCCATTAGTTACCACATATTATAGTTATAGTTTGTTGTTGGTAGTGTAACTTATATATAAATATGCATCTATGTATGGATTAGTGTTAATTTGCAAATACATTGTATGTTAACTATTTCATTCCTTTTGATTAGAGTTTGGAACAATTAATATATAGAATTATATTCAAAATTAAACTATATTATATGAGAGAATAATATATTTGAATAAGATTCAAATATTAAATAATATGAATGAGATAGAACATAATATAAATGAGATTCATATTTAAACTATAAGTTATCAGAGGGAAATACATTTAATATGATCCAAATGTAATATTAGTTAAATATATGATATTTAATTAATTTATATTAAGTAATTATATTAATTAATTAAATTAACTTAAATTTGATTTAATTTAACTTTAGTTAAATTTTAACTCCCCATGGTTAAGGGGAGTTAAATGATGGTTAAAAGAAAGTTAATCCATAATTAAGTTGTCCCTTCTCCATCATTGAATCAACGCAATCTCTCTCAATCTCTCAACACTCTCAAGTTACAAAGAAAAGATTTCTCTACAAAAACTCTTCCCAATCTTCCAAAAGAGGTTCCTATAAACCTATTTCTTGCCAAAGAATAAAAGAGAAGGCTTAGCGATGGTGTCCTATTTGATATCGAAGAAGAATTGTTGAGATCGTGATCATAGTGAGGATTTGGAGAAGATTAAAGAGTTGTCTTCAAAGGTAACCTCTTCTCCTTGATTTGATTTATGTAAAAAACTTGCTTATGAGATTTGTTTATCCTATGGTCTGTTATTTCTTTGTTTTCTTCAAGAATCTCCAAAATGAATTTAAAAGGCACACGCGTTCATGGGCTTCGACTGAGAAATTTGATTCCTTCACTATTCATATCCCTGTCATTGGTGGCTTTGCATCATTAATTTGTGTTGTTTGTCTTTTTGTTTCCCTTTGTTTGGCTCTTCTTTCTTTTTCTTGGATTGGCATCATGGTTAACTATGTTTTAGTTGTGTTTAACTAACATTTATTAAACAATGAGTAATTGTTAATCCTGAATAAATGGTAGTTTGATTAAATTTATAAGATAATTTGTTCTTATGTGTTTGACTATGACTCTAGCAAGGTTATGCTTGTCAATATTGTACAACTTATTATTCATGTCCAACTTCCTCTTGACCTTTTATTTCATATTCAATAAATATCATTCGTTAGTTATTTACATATTACAAGATTCAAAGTGGTATTTTCTTAGTATCATATTTCTTGAGTCTTTGGTTTTTTATGTGTATTTGTGCATCATGATGACCTTACTTTTTGCAATATTTTTGTTGTTGAAGTCCTAAGAGTCTCATTTTATTAATATGTAAAAAAAATATGAATAAGTTAGTTTATGTGGATAATAAAAAAAGTAATTAAATATTTTATGATTTATTGCTTACGTACCAATTTTATTGCTTTTCCTTTATTTGATCTTCCCAGCTTCTCATAAATCTTTTTTTTCATCAATTTATCAAATTACTTCATTTGATTATTTCTTCTGCATCTTAATATCCTATCATAATTAACATGCTAATTAAACTTTCATGTATTTCTAGAAGAAAAAATATAATTTGTAATCAATTTATATTGTACTACCTTGCATTTTGGTTCTTTATTTTCTTTTCCCCCTTGCTCCTTGGTTTAGTCTCCTTTACTTGTTTCCTTGTGTTCAACTTGTTCTTTTGTGGATTGTTGGTCCTTTCCTCGTCCTTCATCTTGGTCGTCATCTTTTCTTCGAATTGTTGGTGGAACATCAAAATGATCAACAAACTTTTGTTTTTCTTTCCTTACTTCCTGTTCTTTCTTAATGTCTTCGAGCTCTTGTTCGAATTCGGATGTTGCCAGTTATCATATAATGTATGAATATGTGAACTAGGAAAGAAATCAAATACAGTGTAGTTTGATTACATACCATAAATAGATTACGTGCCAAAGTTTGTTTCTCACCAACTAGTGAACTTTTCATGTATTTAATCATGGTTTTCAATGTGTCTATCAAGTCATCTATTTTGTTTTACAACCTTTCTCGATCAATCCTCATTTCTTCAAAATTTTCTTCCATCTTTTGGGTCATCATTTCTTGTATTTTGTTTCTATTCTTTCAAAAAACCTTGGTGTCATGTCATCATGTTCAGTGTTTATGCCAATTCCTCTATTTAGTGATAGTTCGACCACTCTTGCTCTTGACATAGACTTGCACAATTCTTCTTCAACCTCTTTCATTACTCTTTTTTCATCCTCTAGAAATGGGGCAAAATATGGCGTGGTCATTTTCTTTGGGGTTGCTAGCAAATGCAATATCTCAAGTTGTCAATTAGATAATAAAACAAGGTGTTAGTTTAGAACACATAATTCAAAAGTTATTTTATTTTTGTTGGTAAAGATGTTCATACATCTTTTGAATTAAAGAATTTTTTCTTCAAATCCCTCCACTTTGGTTGGCTATCTGCAGCCCAATTTACTATTAGTTGTACCTTATTTGAGATCTTTCTTGCAAATCAATTTTTGGGAGAGCTCAATGTTGGTATTACTCCATATGCCCATGCCAATATTGGGAATATAAACTCTCCCATTGATATTCCTGTTTGTTCTTTATTGTTTATTGCTCTATTCATGAATTTAACGAGCAGATCGAAAGCAACCCTTCCCCATGGATAGTTGTCAAACAACTCATCATCATCCACCATTAATATATGCTCGAATTCCAAATTCACATTCTCTTGTTTTGGGATAAGGAAGCTCTCCAAGAAATACAATTTAGGCATTTTTATTCTATCACTGTCAGAGCCTGCTTTGCTAATATTGAAGATTATGTTAAAGAACATCTTGGTCACAGATTTCCAATTATCGAAGTACATTTTCTTTATATGTCCACCTCCTTTTATCATATTTTGATTAATTATTAGCATTTCTATGCAATTTAACCTAGTTATTAGTGTAAACTCCCTTAAACCAAACTTCAATGCTCGACTGCCTATCAAGAAATTTAACTGAGTCGAAAACTTAGATTTACACATTAGTTGTATTAAATACAGTAAAAGTTGTGATGACTGGTTTGTAATCGAAAAATCAAGGAAACGTCCAAAGATTGTGTTTTTAAACTTGTTTTGTTATTTTTCACCTAAGTTTCCCTTGATTTTTTCTATTATTGTACACTTGGTTTACAAGTTTATTTTAAGTGGTTAGTTTCTCCTTTCAGCACTCATCAAATATAAAGCATCCTAATAGTTGTACATTGAACTGTAAGTACAAGTTCTATAAGGTCAGGAAATAATTAAAAGTAGAGTGTATTTTAGTAAATATACCTTTGTTCTATCTTCTCGTAAGGGTGCCTTTCCTTTTTTCTTCTTGGTTTATTTTCCCTTTCTTTTATCTTTGATACTTTTTTTCTAGAATTTGTCAATTACAGTAAATAAGTTGGTATTGTCCAAAGAACTTCATTACCTTTGTCTCTTTCTCCTTTTGTTTCTTTTTGTCCAAGTTTTTATTGGATGATTTCTTTTCTGATTCTATTGTTTCTCCATGGCTTTCTGAATTATCTTCTTCATTGTCTTTCATTTTCTCTTCTATGTTTTCACAAGTCTCTTCAAGTTTTGATTCATCCTATTCACCCTCATTGTTGGACTCTTCTTCCTATTGAGTGTTTTGATGAATTATATGATTAAGTCATTATAAAAAATACAAGATAATTTAAAGAATTTACTAATAAAATGTACATGTCATACCCTAGTCTCTTAAATATCTCTTCGTAAGTTAATTGATGAGATTCATATTTCATAACATGATCATGAGCTCCTCGATCTTAATCATGATTGATTTATGAACTCCTGTTTGTAAGGTTAATCCTTTGATTTACACGGGTGAGAGTGGCCAAAGTTGCCCACTTAATAAACCTACCATTTTGGGGACTTGATTAAATGGGTAGCTAAGAACATAACTTCACTAGATGAAATTCACTCATTTCCGAATAAGGTAAGTAGATTTGTAATTCCCTTACGTGATTTTGGGTCTTGAACAAGGGACCCCACCCTCTCACTTTGGCTCGAGAGAGACTTCGTTTATGGTTGGACCATAAACAAATTGTTCCATTAGAGGAATCGGTGGTACTTAAGGAAAAGATGTAATTATAGGGTTAAAACGAACAATTTGGCTCAGCTATAATTATGAACGACTCGTGAAGGATTGACTTGTTTATATTGATTATACCCATGGACACAATTTGTCCTACAGTGCACAAGAGTTCAACTATGGGTCTATAGTGGTTTGTCTTGTAGTTAATGAATGGGGGTTAATTTAATTAAAGAGTTAATTAATTAATCTTGGATCATTAGAGCTTATAATATGTAAGTGCCCTTGCTAGATCACCATGTTCCAAAAAGTATCGATCATTGAAAGAAAAATTTGAACTGTTCAAATTTTTAAGGAAAATATTAATTGTATTGGATACGATTAATCTATATTTTATCATAAAGGTTATTTGGATGAGATTTAAATAGTAATTATATAATATGGAGAATTCATTTATTTCAATGTGATTCAAATAATTAATTATTTATTTGGATGAGATCCACACAGATAAATAAGTTATTTAATTTGGATAAGGTTCGAATTAAATAAATAAAGGGAGAATTAATTAATTATTTGAATTGGATTCAAATAATTAATTATTTACTTTGGATGATGTTTAAATTAAAGATTCTATAGAAGATAAATATTTAAATATGATTTAAATATTTTAAATCTTTTAATATGAGATATTATTTGAGTAATATTTATTAATATTGAATATTATTAAATATTTAATTTAAAATCTCTCACTGGGCTTATCTCAATAGAATTAGAACTAACTCATAGATTTTTGTAAATAGGGCCCTTGGGAGCCCCTATATAATACACACTCTACTCCATAATCTCTGCAACTATTCTACAAAGATCCCATAAGAAAATTCTCCCAATTTTTAAAGAAGGATTCTCTGAAAATTCTTCTTCCACATTCTCTCCCATTTTCAAGAGCGATTCCCACAAACTAGATCCCTGCCAAAGTTATAGTGAGAAAGATCTTGTATAAAAAGGAAGACTTCGAAGAAAAAACTACCTGTTCGAGGTGAGGATTTTTCTACAGTTGCCACTACAACAAAATGGAAATTCCATGACACATGAACATAAGAAAATTTGGATAGAAGAGAGAAAAAACAATCATTAAAGCCCAAACCATGCATTTTTGGCGGGAGAAAACAGAGTTTTTCAGATTTTTTTGAAATTTATTACAGTCTTTTATGTCACAAATTAAATGACTGTAATAGTCATTAAATGTGCGAAAATGTTAAAGTCGTAATTTTGGCGGAAAAAGACAAATTTTTTTGAATTTTTCAACTATGAGGACATGTTTTTGGGGTTGCTATTCATGACTAGATTTAATAGTCATTGGTGAGTGAATATTCTTTAGACACATTCTTGAAACATGCATTTCATGATATATATCGCCCTCCCCTCTGTAAATATACAGTGGGTTGAAAAAAAAATGAAAATATAAAATCAATTAAAGGTAAGGGTAGAATAGATATTTATGAAAAGAATGAATGGCAAAATGGGGAAATATACATCTTCCTCGTAAAACCTTTTAGATATAGTATAGATAAGATATTAAAATATAAATATATTATTAGGATAACCTTATTTAGGTTTCAAATATATATATATATATATATATATATATATATATATATATATATATATATTTTGTTGAGTTATGTTTTAGCTTTTGTAAATAAGTGACTTACCTGTGGAAGTGCTCAATGATGATAGTACAAATTTCAATTTTTAAGTTTCACTTCAAATAACTTTTTTTAATAAATAAAGAAAATACAAGATTGAACAAATGACCACTCGTTTTTGTTTAGTTTGCTCCCACAAAGCTATTTTCAGTGCATAGAGAAATTTATGGAATAAACTTTGATAAAGGGAAATACTGACCTGACCTAAGACATGAGTAGATTGATATAACTTTGACAAGTAGCACAATTAGTTATGAATAATTGGACCACTGGAGAAGGCTAATAATAGAAACTTTTGAATGGTGTTTAATTTCTCTTTTACTTTATAAATACTTTTAAATGCAAATTTGAAACATTCAAACGTTTTAAAAAAACACTTTCCAAGAGATTAAAAAGTAATATAAGGTAGAAGCAGAACAAGATGAGTATGAAGTTGAACTTGATGACTCTAACCTTCATACTATTATATGTTTCAATTGGAGAAGCCCGATCTAGTGATAGCATTTTTGATGTGACAAAATACGGTGCTATGCCTGATGCTGATATAACTCAGGTAAAAACTAAATGTTTAGACTTCATTTGAAAATCATTTGATTTTTATTCTTTATTTTTAAAATTTAAGCTTACAAGCATTAGTTTCACCTATTGATTTCTTTGTTTTCTTGTATATTGTTTGGAGAATTTTTAAAAACTAAGCAATTCTTTTTAAACTAAAAAAAATTGTTTTTGGGGATTTATTTTCGTGTTTGAAATTTTACGTAGAATTCAATTTTTACTTATAATGTCTTAATATATCATTGTTTGAGAGGAGAAAAAGCTCCATACGTGATGTCTAATTATATTTGAGATTTTAATAGGCTCTAACAAATGCATGGAAAGATGCTTGTGCATCAACAAGTCAAAGTACAATAATTATTCCAAACGCAGCTTACAAGTTGAGTGCAATTGAGTTAGTAGGCCATTGCAAAAGTCCAATCGGAATTCAATTACAAGGGACATTGCAAGCACCAGCAGATTTAACCGGTGAAGATTGGGTTCATTTCAAATATATCGATCATTTTTCATTAACAAGTGGTGGAGTTTTTGACGGGCAAGGAAAACAAGCTTGGGAAAACAATGATTGTGATAAAAATCCTAATTGCGCAAGAATTCCCATGGTAAACACATTTAAATTATCTAATTAACAATTTTAGTACCTTTCTCATTTTTAGCGTATATATCAATAAAATCATAATCTATTTCGTGATTAGAATATTAATCATATCAAACTAAACCTTCATAAATATTTTTTAACTATTTATGTAGGTTTATTTTATTAATAACAATAATTTTTTTTCTTTTGGAATTATACAGAATTTAAAATTCAGCTTTATCACAAATTCAATTGTGAGTGATATAACCTCTAAAGACAGCAAGAACTTTCATGTCCAAATATTGGGTTGTAATAACCTTACCCTCCAACATGTAAATATAAATGCACCAGGAAATAGTATTAACACTGATGGAATTCACATTGGACGTTCTATTGGAATTAATATCATCAATACAAATATTGGTACTGGAGATGATTGTATATCACTTGGAGATGGAAGCAAAGAAGTAACAATTACCAATGTGACATGTGGGCCTGGACATGGTATCAGTGTAGGAAGTTTAGGAAGGTATGCTGTTGAAGAACCAGTTGAGGGAATTCGAGTTAAGAATTGTACATTAATGAATACATCAAATGGCTTGAGAATTAAAACATGGCCAGCTTCTCCTACTGCCGGAACAGCTTCTGATATGCATTATGAAGATATAATTATGGTTAATGTCAGCAATCCCATTCTCATAGATCAAGAATATTGTCCATACAACAAATGTAATAAGCAGGTACTGAAGGTTATGAAACATTTTACATTGACCTCTTTTACACAATTTGAAGTATATTTCCATAAAAATTCAAGTAACCATGGTTTATTTCTTGCTTTCTAGATTCCATCCAAAGTCAAAATTAGTAAGGTTAGTTTCAAGAATATCAGAGGTACTTCTGGTAATGCACTCGCAGTAAAACTTGTTTGTAGTTCTAGTGTTCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTTACTTACAATGGAAGTGAAGGCCCTATTTTATCTCAATGTTCAAATGTGAAGCCTGTTGTTTCTGGAAAGCAAAACCCTCCGGCATGTTCTTCGCTTGCTTCCAAGGCTTCTCCACCAGCTTAA

mRNA sequence

ATGGGATGGTCAGGGGGTGCCGAAAACCTAGTTCTTGATTTTGTGAGAAGTATCTCTTGTGGGATGGTCAGAGGACCGATAGGTCTACCTTCTGATCCTTCAAAGTCGTTGGAGTTTCAAGCGTTCCGAACTTTCCACATATATGGAGGACATGATTTGATCAGCCTTAAGGGCAGTAGGTCAATGAATCACTCATCAAATATAAAGCATCCTAATAGTTGTACATTGAACTGTAAGTACAAGTTCTATAAGGCTCTAACAAATGCATGGAAAGATGCTTGTGCATCAACAAGTCAAAGTACAATAATTATTCCAAACGCAGCTTACAAGTTGAGTGCAATTGAGTTAGTAGGCCATTGCAAAAGTCCAATCGGAATTCAATTACAAGGGACATTGCAAGCACCAGCAGATTTAACCGGTGAAGATTGGGTTCATTTCAAATATATCGATCATTTTTCATTAACAAGTGGTGGAGTTTTTGACGGGCAAGGAAAACAAGCTTGGGAAAACAATGATTGTGATAAAAATCCTAATTGCGCAAGAATTCCCATGAATTTAAAATTCAGCTTTATCACAAATTCAATTGTGAGTGATATAACCTCTAAAGACAGCAAGAACTTTCATGTCCAAATATTGGGTTGTAATAACCTTACCCTCCAACATGTAAATATAAATGCACCAGGAAATAGTATTAACACTGATGGAATTCACATTGGACGTTCTATTGGAATTAATATCATCAATACAAATATTGGTACTGGAGATGATTGTATATCACTTGGAGATGGAAGCAAAGAAGTAACAATTACCAATGTGACATGTGGGCCTGGACATGGTATCAGTGTAGGAAGTTTAGGAAGGTATGCTGTTGAAGAACCAGTTGAGGGAATTCGAGTTAAGAATTGTACATTAATGAATACATCAAATGGCTTGAGAATTAAAACATGGCCAGCTTCTCCTACTGCCGGAACAGCTTCTGATATGCATTATGAAGATATAATTATGGTTAATGTCAGCAATCCCATTCTCATAGATCAAGAATATTGTCCATACAACAAATGTAATAAGCAGATTCCATCCAAAGTCAAAATTAGTAAGGTTAGTTTCAAGAATATCAGAGGTACTTCTGGTAATGCACTCGCAGTAAAACTTGTTTGTAGTTCTAGTGTTCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTTACTTACAATGGAAGTGAAGGCCCTATTTTATCTCAATGTTCAAATGTGAAGCCTGTTGTTTCTGGAAAGCAAAACCCTCCGGCATGTTCTTCGCTTGCTTCCAAGGCTTCTCCACCAGCTTAA

Coding sequence (CDS)

ATGGGATGGTCAGGGGGTGCCGAAAACCTAGTTCTTGATTTTGTGAGAAGTATCTCTTGTGGGATGGTCAGAGGACCGATAGGTCTACCTTCTGATCCTTCAAAGTCGTTGGAGTTTCAAGCGTTCCGAACTTTCCACATATATGGAGGACATGATTTGATCAGCCTTAAGGGCAGTAGGTCAATGAATCACTCATCAAATATAAAGCATCCTAATAGTTGTACATTGAACTGTAAGTACAAGTTCTATAAGGCTCTAACAAATGCATGGAAAGATGCTTGTGCATCAACAAGTCAAAGTACAATAATTATTCCAAACGCAGCTTACAAGTTGAGTGCAATTGAGTTAGTAGGCCATTGCAAAAGTCCAATCGGAATTCAATTACAAGGGACATTGCAAGCACCAGCAGATTTAACCGGTGAAGATTGGGTTCATTTCAAATATATCGATCATTTTTCATTAACAAGTGGTGGAGTTTTTGACGGGCAAGGAAAACAAGCTTGGGAAAACAATGATTGTGATAAAAATCCTAATTGCGCAAGAATTCCCATGAATTTAAAATTCAGCTTTATCACAAATTCAATTGTGAGTGATATAACCTCTAAAGACAGCAAGAACTTTCATGTCCAAATATTGGGTTGTAATAACCTTACCCTCCAACATGTAAATATAAATGCACCAGGAAATAGTATTAACACTGATGGAATTCACATTGGACGTTCTATTGGAATTAATATCATCAATACAAATATTGGTACTGGAGATGATTGTATATCACTTGGAGATGGAAGCAAAGAAGTAACAATTACCAATGTGACATGTGGGCCTGGACATGGTATCAGTGTAGGAAGTTTAGGAAGGTATGCTGTTGAAGAACCAGTTGAGGGAATTCGAGTTAAGAATTGTACATTAATGAATACATCAAATGGCTTGAGAATTAAAACATGGCCAGCTTCTCCTACTGCCGGAACAGCTTCTGATATGCATTATGAAGATATAATTATGGTTAATGTCAGCAATCCCATTCTCATAGATCAAGAATATTGTCCATACAACAAATGTAATAAGCAGATTCCATCCAAAGTCAAAATTAGTAAGGTTAGTTTCAAGAATATCAGAGGTACTTCTGGTAATGCACTCGCAGTAAAACTTGTTTGTAGTTCTAGTGTTCCATGTGAAGGTGTAGAGCTAGCTGACATTGACCTTACTTACAATGGAAGTGAAGGCCCTATTTTATCTCAATGTTCAAATGTGAAGCCTGTTGTTTCTGGAAAGCAAAACCCTCCGGCATGTTCTTCGCTTGCTTCCAAGGCTTCTCCACCAGCTTAA

Protein sequence

MGWSGGAENLVLDFVRSISCGMVRGPIGLPSDPSKSLEFQAFRTFHIYGGHDLISLKGSRSMNHSSNIKHPNSCTLNCKYKFYKALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDWVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKASPPA

Homology

[Close]

BLAST of ClCG08G001960 vs. NCBI nr
Match: XP_008459709.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 619.4 bits (1596), Expect = 2.4e-173
Identity = 293/356 (82.30%), Postives = 322/356 (90.45%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           +AL +AWK+ACASTS   I+IP   YKL  IEL G CKSPI IQ+QGTLQAP DLTGEDW
Sbjct: 39  QALADAWKEACASTSPCKIVIPTGTYKLGTIELKGECKSPIEIQVQGTLQAPPDLTGEDW 98

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           VHFKYID+ S+TSGGVFDGQGKQAWE+NDCDKNP CARIPMNLKFSFI N+IVSDITSKD
Sbjct: 99  VHFKYIDYLSVTSGGVFDGQGKQAWESNDCDKNPKCARIPMNLKFSFIKNAIVSDITSKD 158

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFH+Q+LGCNNLT QHVN+NAP  SINTDGIHIGRS+GINI+NTNIGTGDDCISLGDG
Sbjct: 159 SKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGINILNTNIGTGDDCISLGDG 218

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK+VTITNVTCGPGHGISVGSLGRY +EEPVEG++VKNCTL  T+NGLRIKTWPASP AG
Sbjct: 219 SKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLTGTTNGLRIKTWPASPAAG 278

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
            ASDMHYED++M NV NPILIDQEYCPYN+CNKQ+PSKVKISKVSFKNIRGTSGNA AV 
Sbjct: 279 VASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQVPSKVKISKVSFKNIRGTSGNAAAVT 338

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKAS 440
           LVCSSS PC+GVELADIDLTY+GSEGPI S+C+NVKP VSGKQNPPAC+S A+  S
Sbjct: 339 LVCSSSNPCDGVELADIDLTYSGSEGPITSRCANVKPTVSGKQNPPACTSPATPKS 394

[Close]

BLAST of ClCG08G001960 vs. NCBI nr
Match: KAA0039364.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK00547.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 619.4 bits (1596), Expect = 2.4e-173
Identity = 293/356 (82.30%), Postives = 322/356 (90.45%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           +AL +AWK+ACASTS   I+IP   YKL  IEL G CKSPI IQ+QGTLQAP DLTGEDW
Sbjct: 91  QALADAWKEACASTSPCKIVIPTGTYKLGTIELKGECKSPIEIQVQGTLQAPPDLTGEDW 150

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           VHFKYID+ S+TSGGVFDGQGKQAWE+NDCDKNP CARIPMNLKFSFI N+IVSDITSKD
Sbjct: 151 VHFKYIDYLSVTSGGVFDGQGKQAWESNDCDKNPKCARIPMNLKFSFIKNAIVSDITSKD 210

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFH+Q+LGCNNLT QHVN+NAP  SINTDGIHIGRS+GINI+NTNIGTGDDCISLGDG
Sbjct: 211 SKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGINILNTNIGTGDDCISLGDG 270

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK+VTITNVTCGPGHGISVGSLGRY +EEPVEG++VKNCTL  T+NGLRIKTWPASP AG
Sbjct: 271 SKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLTGTTNGLRIKTWPASPAAG 330

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
            ASDMHYED++M NV NPILIDQEYCPYN+CNKQ+PSKVKISKVSFKNIRGTSGNA AV 
Sbjct: 331 VASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQVPSKVKISKVSFKNIRGTSGNAAAVT 390

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKAS 440
           LVCSSS PC+GVELADIDLTY+GSEGPI S+C+NVKP VSGKQNPPAC+S A+  S
Sbjct: 391 LVCSSSNPCDGVELADIDLTYSGSEGPITSRCANVKPTVSGKQNPPACTSPATPKS 446

[Close]

BLAST of ClCG08G001960 vs. NCBI nr
Match: XP_022157387.1 (exopolygalacturonase-like [Momordica charantia] >XP_022159278.1 exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 613.2 bits (1580), Expect = 1.7e-171
Identity = 292/359 (81.34%), Postives = 321/359 (89.42%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           KAL +AWK+ACAS  QS +IIP  AYKL  I+L G CKSPI +QLQGT+QAP DLTGE W
Sbjct: 44  KALMSAWKEACASPIQSKVIIPKVAYKLGTIDLTGPCKSPIEVQLQGTIQAPIDLTGEGW 103

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           V FKYIDHF+L+ GG FDGQGK AWE NDCDKNP C R+PM+L+FSFITNSIVSDITSKD
Sbjct: 104 VQFKYIDHFTLSGGGTFDGQGKAAWEKNDCDKNPKCDRLPMSLRFSFITNSIVSDITSKD 163

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFHVQILGCNNLT QHVN+NAPG+SINTDGIHIGRS GINI++TNIGTGDDCISLGDG
Sbjct: 164 SKNFHVQILGCNNLTFQHVNVNAPGDSINTDGIHIGRSTGINILSTNIGTGDDCISLGDG 223

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK+VTITNVTCGPGHGISVGSLGRY  EEPVEGIR  NCT+MNTSNG+RIKTWPASPTAG
Sbjct: 224 SKQVTITNVTCGPGHGISVGSLGRYTAEEPVEGIRATNCTIMNTSNGVRIKTWPASPTAG 283

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
           TASDMH+ED+IMVNVSNPILIDQEYCPYN+CNK+ PSKVKISKVSFKN+RG+S NALAVK
Sbjct: 284 TASDMHFEDMIMVNVSNPILIDQEYCPYNQCNKKSPSKVKISKVSFKNVRGSSANALAVK 343

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKASPPA 443
           LVCS+ VPCE VE+ADIDLTYNG+EGPI SQC NVKP++SGKQNP ACSS A    PPA
Sbjct: 344 LVCSAEVPCEDVEVADIDLTYNGNEGPISSQCKNVKPIISGKQNPRACSSPA----PPA 398

[Close]

BLAST of ClCG08G001960 vs. NCBI nr
Match: XP_022150984.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 610.1 bits (1572), Expect = 1.5e-170
Identity = 288/358 (80.45%), Postives = 323/358 (90.22%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           +AL  AWK+ACAST+QS +IIP A+Y+L+ ++LVG CKSPIGI+ QGTLQAP D TGE W
Sbjct: 48  QALLKAWKEACASTTQSKVIIPKASYQLTGVDLVGPCKSPIGIEFQGTLQAPIDPTGEGW 107

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           V+FKYIDHFSLT GGVFDGQGK AWE NDC +NPNCA+ PM+LKFSFITNSIVS+ITSKD
Sbjct: 108 VNFKYIDHFSLTGGGVFDGQGKLAWEKNDCGQNPNCAQFPMSLKFSFITNSIVSEITSKD 167

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFHV +LGCNNLT +HV I+APG+SINTDGIHIGRS  +N+++T IGTGDDCISLGDG
Sbjct: 168 SKNFHVFVLGCNNLTFEHVTIDAPGHSINTDGIHIGRSNEVNVLSTRIGTGDDCISLGDG 227

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK VTI NVTCGPGHGISVGSLGRY VEEPVEGI VKNCT  NT NG+RIKTWPASPT G
Sbjct: 228 SKHVTINNVTCGPGHGISVGSLGRYTVEEPVEGIIVKNCTFTNTDNGVRIKTWPASPTPG 287

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
           TA++MHYEDIIMVNVSNPILIDQEYCPYN+CNK+IPSKVKISKVSFKNIRG+S NALAVK
Sbjct: 288 TATNMHYEDIIMVNVSNPILIDQEYCPYNQCNKKIPSKVKISKVSFKNIRGSSANALAVK 347

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKASPP 442
           ++CSS  PCEGVE+ADIDLTYNGSEGPI SQCSNVKP++SGKQNPPACSS+A  ASPP
Sbjct: 348 IICSSDFPCEGVEIADIDLTYNGSEGPITSQCSNVKPIISGKQNPPACSSVAPIASPP 405

[Close]

BLAST of ClCG08G001960 vs. NCBI nr
Match: XP_031741217.1 (LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 578.9 bits (1491), Expect = 3.6e-161
Identity = 275/360 (76.39%), Postives = 310/360 (86.11%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKS-PIGIQLQGTLQAPADLTGED 143
           +AL  AWK+ACAS   S +IIP+  Y L AIEL G C S PI +Q+Q TL AP DL GED
Sbjct: 93  QALATAWKEACASAGPSKVIIPSGTYTLGAIELKGECTSTPIEMQVQATLLAPPDLKGED 152

Query: 144 WVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSK 203
           WVHFKY++  S++ GGVFDGQGK+ WE+NDC KNP CA +PM+LKFSFI NS+VS ITSK
Sbjct: 153 WVHFKYVNDLSVSGGGVFDGQGKKXWESNDCHKNPKCAPMPMSLKFSFIKNSVVSGITSK 212

Query: 204 DSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGD 263
           DSKNFH+Q+LGCNN TLQ+VN+NAPG SINTDGIH+GR +GINI+N+NIGTGDDCISLGD
Sbjct: 213 DSKNFHIQVLGCNNFTLQNVNVNAPGTSINTDGIHLGRCVGINILNSNIGTGDDCISLGD 272

Query: 264 GSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTA 323
           GSK+VTITNVTCGPGHGISVGSLGRY  EEPVEG++VKNCT+  T++GLRIKTWPASP A
Sbjct: 273 GSKQVTITNVTCGPGHGISVGSLGRYNAEEPVEGLQVKNCTITGTTSGLRIKTWPASPAA 332

Query: 324 GTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAV 383
           G ASDMHYEDI+M NVSNPI+IDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNA AV
Sbjct: 333 GVASDMHYEDIVMNNVSNPIMIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNAQAV 392

Query: 384 KLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKASPPA 443
            LVCSSS PCEGVELADIDLTY G+EGPI S C+NVKP ++GKQNPP CS LA KA  PA
Sbjct: 393 TLVCSSSNPCEGVELADIDLTYTGNEGPITSVCANVKPTITGKQNPPICSPLAPKAQSPA 452

[Close]

BLAST of ClCG08G001960 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 1.1e-125
Identity = 221/360 (61.39%), Postives = 265/360 (73.61%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPAD---LTG 143
           +ALT AWK+ACAS S STI++P   + +  I L G CKS IG+QLQGTL+APAD   + G
Sbjct: 4   QALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSKIKG 63

Query: 144 EDWVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKN-PNCARIPMNLKFSFITNSIVSDI 203
             W++   ID  ++  GGVFDGQGK AW  NDC KN P C  + MNL+   +TNSI+ D+
Sbjct: 64  LGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSILRDV 123

Query: 204 TSKDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCIS 263
           T+ DSKNFHV ++GC NLT +   I+A   SINTDGIHIGRS G+NIINT I TGDDCIS
Sbjct: 124 TTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCIS 183

Query: 264 LGDGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPAS 323
           LGDGSK + ITN+TCGPGHGISVGSLGRY  EE V GI VKNCT+  + NG+RIKTWP S
Sbjct: 184 LGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTWPKS 243

Query: 324 PTAGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNA 383
              G AS+MH++DI M +V  PILIDQ YCPYN+C  ++PS VK+SK+SFKNI+GTS   
Sbjct: 244 -EPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTK 303

Query: 384 LAVKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKAS 440
            AVKLVCS S PC GVELADIDLTY+G  GP  S C N+KP + GKQ P  CS  A+KA+
Sbjct: 304 EAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAICSGSAAKAA 362

[Close]

BLAST of ClCG08G001960 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 3.3e-117
Identity = 201/388 (51.80%), Postives = 271/388 (69.85%), Query Frame = 0


Query: 53  LISLKGSRSMNHSSNIKHPNSCTLNCKYKFYKALTNAWKDACASTSQSTIIIPNAAYKLS 112
           L+ +  S+  + + ++        + K    K   +AWK+ACAS + ST++IP   Y LS
Sbjct: 16  LLFISASKVQSDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLS 75

Query: 113 AIELVGHCKSPIGIQLQGTLQAPAD---LTGEDWVHFKYIDHFSLTSGGVFDGQGKQAWE 172
            + L G CK+PI I +QGT+QAPAD       +WV F  +++F +  GG+FDGQG  A+E
Sbjct: 76  KVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYE 135

Query: 173 NNDCDKNPNCARIPMNLKFSFITNSIVSDITSKDSKNFHVQILGCNNLTLQHVNINAPGN 232
            N C+     +++P+N++F F+TN+++ DITSKDSK FH+ +  C N+TL+ + I AP  
Sbjct: 136 KNTCENREFRSKLPVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDE 195

Query: 233 SINTDGIHIGRSIGINIINTNIGTGDDCISLGDGSKEVTITNVTCGPGHGISVGSLGRYA 292
           S NTDGIH+G+S G+NII ++I TGDDCIS+GDG+K + I  +TCGPGHGIS+GSLG++ 
Sbjct: 196 SPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQ 255

Query: 293 VEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAGTASDMHYEDIIMVNVSNPILIDQEYC 352
            EEPVEGI++ NCT+ NTSNG RIKTWP     G  S++H+EDI M NVS+PILIDQ+YC
Sbjct: 256 NEEPVEGIKISNCTITNTSNGARIKTWPGE-HGGAVSEIHFEDITMNNVSSPILIDQQYC 315

Query: 353 PYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVKLVCSSSVPCEGVELADIDLTYNGSEG 412
           P+NKC K   SKVK+S +SFKNIRGTS    A+K +CS S PC+ VELADID+ +NG+E 
Sbjct: 316 PWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAE- 375

Query: 413 PILSQCSNVKPVVSGKQNPPACSSLASK 438
           P  SQC NVKP+ SGK NP  CS    K
Sbjct: 376 PATSQCLNVKPITSGKLNPIPCSGPVPK 401

[Close]

BLAST of ClCG08G001960 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.4e-117
Identity = 197/357 (55.18%), Postives = 259/357 (72.55%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPAD---LTG 143
           K   +AWK+ACAS + ST++IP   Y LS + L G CK+PI I +QGT+QAPAD      
Sbjct: 47  KPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKD 106

Query: 144 EDWVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDIT 203
            +WV F  +++F +  GG+FDGQG  A+E N C+     +++P+N++F F+TN+++ DIT
Sbjct: 107 PNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDIT 166

Query: 204 SKDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISL 263
           SKDSK FH+ +  C N+TL+ + I AP  S NTDGIH+G+S G+NII ++I TGDDCIS+
Sbjct: 167 SKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISI 226

Query: 264 GDGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASP 323
           GDG+K + I  +TCGPGHGIS+GSLG++  EEPVEGI++ NCT+ NTSNG RIKTWP   
Sbjct: 227 GDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGE- 286

Query: 324 TAGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNAL 383
             G  S++H+EDI M NVS+PILIDQ+YCP+NKC K   SKVK+S +SFKNIRGTS    
Sbjct: 287 HGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPE 346

Query: 384 AVKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASK 438
           A+K +CS S PC+ VELADID+ +NG+E P  SQC NVKP+  GK NP  CS    K
Sbjct: 347 AIKFICSGSSPCQNVELADIDIQHNGAE-PATSQCLNVKPITIGKLNPIPCSGPVPK 401

[Close]

BLAST of ClCG08G001960 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 6.9e-115
Identity = 201/365 (55.07%), Postives = 269/365 (73.70%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLT---- 143
           +ALT+AW +ACAST+ + I+IP   Y+L+ IEL G CK+PI +Q+ GT+QAPAD +    
Sbjct: 40  QALTSAWNEACASTTAAKIVIPAGTYQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKG 99

Query: 144 GEDWVHFKYIDHFSLTSGGVFDGQG-----KQAWENNDCDKNPNCARIPMNLKFSFITNS 203
            E W  F Y+DH +L+  GVFDGQG     K A  +    KN N +++ MN  F+F+ NS
Sbjct: 100 TEQWFKFLYMDHLTLSGKGVFDGQGATVYKKAAPASAWSGKNSN-SKVFMNFGFNFVNNS 159

Query: 204 IVSDITSKDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTG 263
           IV  +TSKDSKNFHV + GC N+T     I APG+S NTDGIH+G+S  + I+NTNIGTG
Sbjct: 160 IVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTG 219

Query: 264 DDCISLGDGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIK 323
           DDC+S+GDGSK++T+  V CGPGHG+SVGSLG++  EE VEGI VKNCTL  T NG+RIK
Sbjct: 220 DDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIK 279

Query: 324 TWPASPTAGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRG 383
           TWP +P   T SD+H+EDI M NV NP++IDQEY P+N+C+K+ PSK+K+SK+SFKN++G
Sbjct: 280 TWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKG 339

Query: 384 TSGNALAVKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSL 440
           TSG A  V L+CSS+VPC+GVEL ++DL +NG+  P  ++C+NVKP+V+G    P C + 
Sbjct: 340 TSGTAEGVVLICSSAVPCDGVELNNVDLKFNGA--PTTAKCTNVKPLVTG--TAPVCQAP 399

[Close]

BLAST of ClCG08G001960 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 3.4e-114
Identity = 195/359 (54.32%), Postives = 263/359 (73.26%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPAD---LTG 143
           +AL NA+K+AC STS STI+IP   + ++ ++L G CKSP+ +Q+Q TL+AP+D   L  
Sbjct: 42  EALLNAFKEACQSTSPSTIVIPKGTFTMNQVKLEGPCKSPLELQIQATLKAPSDPSQLKV 101

Query: 144 EDWVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDIT 203
            +W+    +D F+++ GG+ DGQ   AWE   C ++  C ++P NL F+ +TNS + DIT
Sbjct: 102 GEWLTVNKLDQFTMSGGGILDGQAAAAWE---CKQSKKCNKLPNNLSFNSLTNSTIKDIT 161

Query: 204 SKDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISL 263
           + DSK+FHV +  C NLT    N++AP NS NTDGIH+ RS  +NI ++N  TGDDCIS+
Sbjct: 162 TLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISV 221

Query: 264 GDGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASP 323
           GD ++++ IT VTCGPGHGISVGSLG    E+PV G+ V+NCT  NT NG+RIKTWPAS 
Sbjct: 222 GDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPAS- 281

Query: 324 TAGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNAL 383
             G  +D+H+EDII+ NVSNP++IDQ YCP+NKCNK +PS+VKISKVSF+NI+GTS    
Sbjct: 282 HPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQD 341

Query: 384 AVKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKAS 440
           AV L+ S  VPCEG+E+ DID+TY+G EGP  S C N+KP + GKQNPP C++ A+ +S
Sbjct: 342 AVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVCTASAASSS 396

[Close]

BLAST of ClCG08G001960 vs. ExPASy TrEMBL
Match: A0A5A7T7B3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001590 PE=3 SV=1)

HSP 1 Score: 619.4 bits (1596), Expect = 1.2e-173
Identity = 293/356 (82.30%), Postives = 322/356 (90.45%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           +AL +AWK+ACASTS   I+IP   YKL  IEL G CKSPI IQ+QGTLQAP DLTGEDW
Sbjct: 91  QALADAWKEACASTSPCKIVIPTGTYKLGTIELKGECKSPIEIQVQGTLQAPPDLTGEDW 150

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           VHFKYID+ S+TSGGVFDGQGKQAWE+NDCDKNP CARIPMNLKFSFI N+IVSDITSKD
Sbjct: 151 VHFKYIDYLSVTSGGVFDGQGKQAWESNDCDKNPKCARIPMNLKFSFIKNAIVSDITSKD 210

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFH+Q+LGCNNLT QHVN+NAP  SINTDGIHIGRS+GINI+NTNIGTGDDCISLGDG
Sbjct: 211 SKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGINILNTNIGTGDDCISLGDG 270

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK+VTITNVTCGPGHGISVGSLGRY +EEPVEG++VKNCTL  T+NGLRIKTWPASP AG
Sbjct: 271 SKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLTGTTNGLRIKTWPASPAAG 330

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
            ASDMHYED++M NV NPILIDQEYCPYN+CNKQ+PSKVKISKVSFKNIRGTSGNA AV 
Sbjct: 331 VASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQVPSKVKISKVSFKNIRGTSGNAAAVT 390

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKAS 440
           LVCSSS PC+GVELADIDLTY+GSEGPI S+C+NVKP VSGKQNPPAC+S A+  S
Sbjct: 391 LVCSSSNPCDGVELADIDLTYSGSEGPITSRCANVKPTVSGKQNPPACTSPATPKS 446

[Close]

BLAST of ClCG08G001960 vs. ExPASy TrEMBL
Match: A0A1S3CC08 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1)

HSP 1 Score: 619.4 bits (1596), Expect = 1.2e-173
Identity = 293/356 (82.30%), Postives = 322/356 (90.45%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           +AL +AWK+ACASTS   I+IP   YKL  IEL G CKSPI IQ+QGTLQAP DLTGEDW
Sbjct: 39  QALADAWKEACASTSPCKIVIPTGTYKLGTIELKGECKSPIEIQVQGTLQAPPDLTGEDW 98

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           VHFKYID+ S+TSGGVFDGQGKQAWE+NDCDKNP CARIPMNLKFSFI N+IVSDITSKD
Sbjct: 99  VHFKYIDYLSVTSGGVFDGQGKQAWESNDCDKNPKCARIPMNLKFSFIKNAIVSDITSKD 158

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFH+Q+LGCNNLT QHVN+NAP  SINTDGIHIGRS+GINI+NTNIGTGDDCISLGDG
Sbjct: 159 SKNFHIQVLGCNNLTFQHVNVNAPETSINTDGIHIGRSLGINILNTNIGTGDDCISLGDG 218

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK+VTITNVTCGPGHGISVGSLGRY +EEPVEG++VKNCTL  T+NGLRIKTWPASP AG
Sbjct: 219 SKQVTITNVTCGPGHGISVGSLGRYNLEEPVEGLQVKNCTLTGTTNGLRIKTWPASPAAG 278

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
            ASDMHYED++M NV NPILIDQEYCPYN+CNKQ+PSKVKISKVSFKNIRGTSGNA AV 
Sbjct: 279 VASDMHYEDVVMNNVMNPILIDQEYCPYNQCNKQVPSKVKISKVSFKNIRGTSGNAAAVT 338

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKAS 440
           LVCSSS PC+GVELADIDLTY+GSEGPI S+C+NVKP VSGKQNPPAC+S A+  S
Sbjct: 339 LVCSSSNPCDGVELADIDLTYSGSEGPITSRCANVKPTVSGKQNPPACTSPATPKS 394

[Close]

BLAST of ClCG08G001960 vs. ExPASy TrEMBL
Match: A0A6J1DUC6 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV=1)

HSP 1 Score: 613.2 bits (1580), Expect = 8.4e-172
Identity = 292/359 (81.34%), Postives = 321/359 (89.42%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           KAL +AWK+ACAS  QS +IIP  AYKL  I+L G CKSPI +QLQGT+QAP DLTGE W
Sbjct: 44  KALMSAWKEACASPIQSKVIIPKVAYKLGTIDLTGPCKSPIEVQLQGTIQAPIDLTGEGW 103

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           V FKYIDHF+L+ GG FDGQGK AWE NDCDKNP C R+PM+L+FSFITNSIVSDITSKD
Sbjct: 104 VQFKYIDHFTLSGGGTFDGQGKAAWEKNDCDKNPKCDRLPMSLRFSFITNSIVSDITSKD 163

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFHVQILGCNNLT QHVN+NAPG+SINTDGIHIGRS GINI++TNIGTGDDCISLGDG
Sbjct: 164 SKNFHVQILGCNNLTFQHVNVNAPGDSINTDGIHIGRSTGINILSTNIGTGDDCISLGDG 223

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK+VTITNVTCGPGHGISVGSLGRY  EEPVEGIR  NCT+MNTSNG+RIKTWPASPTAG
Sbjct: 224 SKQVTITNVTCGPGHGISVGSLGRYTAEEPVEGIRATNCTIMNTSNGVRIKTWPASPTAG 283

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
           TASDMH+ED+IMVNVSNPILIDQEYCPYN+CNK+ PSKVKISKVSFKN+RG+S NALAVK
Sbjct: 284 TASDMHFEDMIMVNVSNPILIDQEYCPYNQCNKKSPSKVKISKVSFKNVRGSSANALAVK 343

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKASPPA 443
           LVCS+ VPCE VE+ADIDLTYNG+EGPI SQC NVKP++SGKQNP ACSS A    PPA
Sbjct: 344 LVCSAEVPCEDVEVADIDLTYNGNEGPISSQCKNVKPIISGKQNPRACSSPA----PPA 398

[Close]

BLAST of ClCG08G001960 vs. ExPASy TrEMBL
Match: A0A6J1DBN7 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 7.1e-171
Identity = 288/358 (80.45%), Postives = 323/358 (90.22%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDW 143
           +AL  AWK+ACAST+QS +IIP A+Y+L+ ++LVG CKSPIGI+ QGTLQAP D TGE W
Sbjct: 48  QALLKAWKEACASTTQSKVIIPKASYQLTGVDLVGPCKSPIGIEFQGTLQAPIDPTGEGW 107

Query: 144 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 203
           V+FKYIDHFSLT GGVFDGQGK AWE NDC +NPNCA+ PM+LKFSFITNSIVS+ITSKD
Sbjct: 108 VNFKYIDHFSLTGGGVFDGQGKLAWEKNDCGQNPNCAQFPMSLKFSFITNSIVSEITSKD 167

Query: 204 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 263
           SKNFHV +LGCNNLT +HV I+APG+SINTDGIHIGRS  +N+++T IGTGDDCISLGDG
Sbjct: 168 SKNFHVFVLGCNNLTFEHVTIDAPGHSINTDGIHIGRSNEVNVLSTRIGTGDDCISLGDG 227

Query: 264 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 323
           SK VTI NVTCGPGHGISVGSLGRY VEEPVEGI VKNCT  NT NG+RIKTWPASPT G
Sbjct: 228 SKHVTINNVTCGPGHGISVGSLGRYTVEEPVEGIIVKNCTFTNTDNGVRIKTWPASPTPG 287

Query: 324 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 383
           TA++MHYEDIIMVNVSNPILIDQEYCPYN+CNK+IPSKVKISKVSFKNIRG+S NALAVK
Sbjct: 288 TATNMHYEDIIMVNVSNPILIDQEYCPYNQCNKKIPSKVKISKVSFKNIRGSSANALAVK 347

Query: 384 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKASPP 442
           ++CSS  PCEGVE+ADIDLTYNGSEGPI SQCSNVKP++SGKQNPPACSS+A  ASPP
Sbjct: 348 IICSSDFPCEGVEIADIDLTYNGSEGPITSQCSNVKPIISGKQNPPACSSVAPIASPP 405

[Close]

BLAST of ClCG08G001960 vs. ExPASy TrEMBL
Match: A0A6J1HJP4 (exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111465122 PE=3 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 6.9e-150
Identity = 249/348 (71.55%), Postives = 293/348 (84.20%), Query Frame = 0


Query: 86  LTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTGEDWVH 145
           L  AWKDACAS  QS +IIP   Y L  I L+G CKSPI I +QGT+ AP D+TG+ W+ 
Sbjct: 47  LDKAWKDACASPIQSKLIIPKETYMLGVITLLGPCKSPIDIVVQGTIMAPVDITGDGWIQ 106

Query: 146 FKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKDSK 205
           F+Y+D  SLT GGVFDGQG++AWE NDC KNP CARIPM+LKFSF+ +SIV DITSKDSK
Sbjct: 107 FRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLKFSFVKDSIVRDITSKDSK 166

Query: 206 NFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDGSK 265
           NFHV ILGC NLT  HV INAPG SIN+DGIH+GR  G+NIIN+ IGTGDDCISLGDGS+
Sbjct: 167 NFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDDCISLGDGSR 226

Query: 266 EVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAGTA 325
           EVTITNVTCGPGHGISVGSLG+Y VEEPV G+ VKNCTL+ T+NGLRIKTWPASP  G+ 
Sbjct: 227 EVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTWPASPATGSV 286

Query: 326 SDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVKLV 385
           +DMHYEDI++V+V NPI++DQEYCPYNKCN++IPSK+KISKVSFKNIRG++GNA+AVKL+
Sbjct: 287 TDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSAGNAVAVKLL 346

Query: 386 CSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSS 434
           CS+  PCE V L+DID+TY G EGP++S+CSNVKPVV+G Q P  C S
Sbjct: 347 CSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPVVTGIQKPIICPS 394

[Close]

BLAST of ClCG08G001960 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 415.2 bits (1066), Expect = 6.4e-116
Identity = 196/355 (55.21%), Postives = 257/355 (72.39%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLT--GE 143
           +AL  A+  AC S+S S ++IP   +KL  IE+ G CK+PI + LQGT++A  +     E
Sbjct: 37  QALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNAIQGKE 96

Query: 144 DWVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITS 203
            WV F  ID F L  GG FDG+G  AW  N+C K   C ++P++++F FI NS + DI+S
Sbjct: 97  KWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISIRFDFILNSEIRDISS 156

Query: 204 KDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLG 263
            D+KNFH+ +LG  N+T+ ++ I AP +S NTDGIH+GRS G+ I+N+ I TGDDCIS+G
Sbjct: 157 IDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVG 216

Query: 264 DGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPT 323
           DG K + +  VTCGPGHGISVGSLGRY  E+ V GI+V NCTL  T NGLRIKTWP++  
Sbjct: 217 DGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAAC 276

Query: 324 AGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALA 383
           + TASD+H+EDII+ +VSNPILIDQEYCP+N+CNKQ  S +K+  +SFKNIRGTSGN  A
Sbjct: 277 STTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDA 336

Query: 384 VKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLAS 437
           VKL+CS   PC+ VE+ DID+ YNG++GP    CSNV P + G Q+P ACS+ A+
Sbjct: 337 VKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPKILGSQSPKACSAPAA 391

[Close]

BLAST of ClCG08G001960 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 412.9 bits (1060), Expect = 3.2e-115
Identity = 194/358 (54.19%), Postives = 260/358 (72.63%), Query Frame = 0


Query: 85  ALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLTG-EDW 144
           AL  A+ +AC   ++ST++IP   YKL  I ++G CK+PI I L GT++A  +  G E W
Sbjct: 39  ALLKAFNEACQFPTKSTVMIPKGEYKLGEIVMMGPCKAPIRIALLGTVKADGNANGKEKW 98

Query: 145 VHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITSKD 204
           V F+ I+ F L  GGVFDG+G  AW  N+C K  NC ++P++++F F+T++ +  ITS D
Sbjct: 99  VAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPISIRFDFVTDAKIRGITSLD 158

Query: 205 SKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLGDG 264
           +K+FH+ ++G  N+T + V I AP  S NTDGIH+GRS GI IIN+ I TGDDC+S+GDG
Sbjct: 159 AKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDDCVSVGDG 218

Query: 265 SKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPTAG 324
            K + +  VTCGPGHGIS+GSLGRY+ EE V GI++ NCTL  T NGLRIKTWP++    
Sbjct: 219 MKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTT 278

Query: 325 TASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALAVK 384
           TASD+H+E+I++ NVSNPILIDQEYCP+N+CNKQ PS +K++ +SFK IRGTSGN  AVK
Sbjct: 279 TASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVK 338

Query: 385 LVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLASKASPP 442
           L+CS   PC+ VE+ D+++ Y G++GP   QCSNV P + G Q P ACSS  +K  PP
Sbjct: 339 LLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKACSSPVTK--PP 394

[Close]

BLAST of ClCG08G001960 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 401.4 bits (1030), Expect = 9.6e-112
Identity = 191/352 (54.26%), Postives = 250/352 (71.02%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQA--PADLTGE 143
           +AL  A+  AC + + S ++I    +KL  IE+ G CK+P+ I LQGTL+A   A    E
Sbjct: 38  QALLKAFTSACQAPTASKVVITKGEFKLGEIEMTGPCKAPVEINLQGTLKADGKAIQGKE 97

Query: 144 DWVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITS 203
            WV F  I+ F L  GG+FDG+G  AW  N+C K   C ++P++++F F+ N+ + DI+S
Sbjct: 98  RWVVFLRINGFKLNGGGIFDGEGNAAWRVNNCHKTFECKKLPISIRFDFVENAEIRDISS 157

Query: 204 KDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLG 263
            D+KNFH+ +LG  N+T  +V + AP  S NTDGIH+GRS G+ I+N+ I TGDDCIS+G
Sbjct: 158 IDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDDCISVG 217

Query: 264 DGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPT 323
           DG K + + NV CGPGHGISVGSLGRY  E+ V GI V NCTL  T NGLRIKTWP++  
Sbjct: 218 DGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAAC 277

Query: 324 AGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALA 383
           A TAS +H+E+II+ NVSNPILIDQEYCP+N+CNKQ PS +K+  +SFKNIRGTSGN  A
Sbjct: 278 ATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDA 337

Query: 384 VKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSS 434
           VKL+CS + PC  VE+ +I+L Y G++GP    CSNV P + G QNP ACS+
Sbjct: 338 VKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVSPKLVGTQNPKACSA 389

[Close]

BLAST of ClCG08G001960 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-110
Identity = 184/352 (52.27%), Postives = 250/352 (71.02%), Query Frame = 0


Query: 84  KALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADLT--GE 143
           +AL  A+  AC S +   ++IP   +KL  I + G CKSP+ I L GT+ A  +     E
Sbjct: 38  QALLRAFTTACQSPTPRKVVIPKGQFKLGEIMMSGPCKSPVEITLLGTVLADGNSIHGKE 97

Query: 144 DWVHFKYIDHFSLTSGGVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDITS 203
            WV F+ +D F L  GG FDG+G  AW  N+C K   C ++P++++F F+TN+ + DI+S
Sbjct: 98  KWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKLPISIRFDFVTNAEIRDISS 157

Query: 204 KDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCISLG 263
            D+KNFH+ ++G  N+T  +V I AP  S NTDGIH+GRS+G++IIN+ I TGDDC+S+G
Sbjct: 158 IDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGDDCVSVG 217

Query: 264 DGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPASPT 323
           DG   + + NV CGPGHGISVGSLGRY  E+ V GIRV NCTL  T NGLRIKTWP++  
Sbjct: 218 DGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAAC 277

Query: 324 AGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNALA 383
           + TAS++H+E+II+ NVSNPILIDQEYCP+N+CNKQ  S +K++ +SF+ IRGTSGN  A
Sbjct: 278 STTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDA 337

Query: 384 VKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSS 434
           VKL+CS   PCE V++ DI++ Y G++GP    CSNV+P + G Q P AC++
Sbjct: 338 VKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVRPKLVGTQFPKACNT 389

[Close]

BLAST of ClCG08G001960 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 388.7 bits (997), Expect = 6.5e-108
Identity = 183/356 (51.40%), Postives = 249/356 (69.94%), Query Frame = 0


Query: 85  ALTNAWKDACASTSQSTIIIPNAAYKLSAIELVGHCKSPIGIQLQGTLQAPADL----TG 144
           A   AWK+ACA  + STI +P   Y + ++E  G CK P+ ++L G  +APA +      
Sbjct: 89  AFAAAWKEACA--AGSTITVPKGEYLVESLEFKGPCKGPVTLELNGNFKAPATVKTTKPH 148

Query: 145 EDWVHFKYIDHFSLTSG-GVFDGQGKQAWENNDCDKNPNCARIPMNLKFSFITNSIVSDI 204
             W+ F+ +  F+L     +FDGQG  AW+ NDC K   C  +P+N++F+ +TNS ++ I
Sbjct: 149 AGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFTGLTNSKINSI 208

Query: 205 TSKDSKNFHVQILGCNNLTLQHVNINAPGNSINTDGIHIGRSIGINIINTNIGTGDDCIS 264
           TS +SK FH+ IL C N+TL  + I+AP  S+NTDGIHIGRS G+N+I   I TGDDC+S
Sbjct: 209 TSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVS 268

Query: 265 LGDGSKEVTITNVTCGPGHGISVGSLGRYAVEEPVEGIRVKNCTLMNTSNGLRIKTWPAS 324
           +GDG++ + + NV CGPGHGIS+GSLGRY  E+PV+G+ V+ C + NT NG+RIKTWP S
Sbjct: 269 IGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 328

Query: 325 PTAGTASDMHYEDIIMVNVSNPILIDQEYCPYNKCNKQIPSKVKISKVSFKNIRGTSGNA 384
           P  G AS++ +EDI M NVS P+LIDQEYCPY  C   +PSKVK+S V+ KNI+GTS   
Sbjct: 329 P-PGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATK 388

Query: 385 LAVKLVCSSSVPCEGVELADIDLTYNGSEGPILSQCSNVKPVVSGKQNPPACSSLA 436
           +AVKL+CS  VPC  + L+DI+L +NG EGP +S CSN+KP++SGK  P AC+ +A
Sbjct: 389 VAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSGKLVPAACTEVA 441

The following BLAST results are available for this feature:

BLAST of ClCG08G001960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459709.2	2.4e-173	82.30	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
KAA0039364.1	2.4e-173	82.30	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK00547.1 exopolygalactur...	[more]
XP_022157387.1	1.7e-171	81.34	exopolygalacturonase-like [Momordica charantia] >XP_022159278.1 exopolygalacturo...	[more]
XP_022150984.1	1.5e-170	80.45	exopolygalacturonase-like [Momordica charantia]	[more]
XP_031741217.1	3.6e-161	76.39	LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus]	[more]

BLAST of ClCG08G001960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24548	1.1e-125	61.39	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q39786	3.3e-117	51.80	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
Q39766	7.4e-117	55.18	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q40312	6.9e-115	55.07	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
Q05967	3.4e-114	54.32	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]

BLAST of ClCG08G001960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7B3	1.2e-173	82.30	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CC08	1.2e-173	82.30	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103498752 PE=3 SV=1	[more]
A0A6J1DUC6	8.4e-172	81.34	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111024096 PE=3 SV...	[more]
A0A6J1DBN7	7.1e-171	80.45	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111019009 PE=3 SV...	[more]
A0A6J1HJP4	6.9e-150	71.55	exopolygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111465122 PE=3 SV=1	[more]

BLAST of ClCG08G001960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07820.1	6.4e-116	55.21	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	3.2e-115	54.19	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	9.6e-112	54.26	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	2.4e-110	52.27	Pectin lyase-like superfamily protein	[more]
AT3G14040.1	6.5e-108	51.40	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 264..284 e-value: 2000.0 score: 5.1 coord: 214..240 e-value: 200.0 score: 10.7 coord: 294..315 e-value: 8.5 score: 15.3
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 94..420 e-value: 5.0E-98 score: 328.1
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 271..284
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 82..439 e-value: 3.4E-100 score: 337.9
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 78..435
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 78..435
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 83..432

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G001960.2	ClCG08G001960.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity