ClCG08G001770 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G001770
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
LocationCG_Chr08: 3551772 .. 3554420 (-)
RNA-Seq ExpressionClCG08G001770
SyntenyClCG08G001770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTGGGGGGGGACTCCTTGTCTGAGCTTGCAGTCCCCGCGTGTGTATCAGAATATGAAGAGTCGTCCATGGACGTCTCAGGTGTTTTTACAAGAGTTAGTGGGCTCTCCGGCTCCGAACTTGACAATCACCGCGGAGCTGACGGGTACTTATATGAGTCAAAGTTGTTGTCAGTATCAGACCAATCAAATTTGAAATACCGAAAGAATCGATAGTGGAAGCGAGTAATCGTTTTATGCCATTAAATTTGTTTTTGGTTAATTAGAAGAATAAACATATAGGATAAACTATTGTATTAGCATACTTTTAAAGAAGAGTTAGAGATTAGGAGTTTTTCCTACCTGACCTTATTTGACATGGAAATCTCCTTTTTCCAAGTCACAAACCAGTGAGAATTTCCAATAAAACACAACAAGAAGTCTTTATAAGCTAGAAAGGGGAGCTTATAGACTTATAATTAGAAGCTCTATAATCAATTAAACTCTTTAATTAGATTAATCAATTAAACTATTTAATTAGATTAATCAATATTCATTAACCGTAGGTCACTCCATTAAAGACTTACAATTGCACTCTTCACACTATAGATATATTTCTGTGTCCACGGAATTTACTAATCAACAATAAGTCGACCCTTCACAAATTACTTATAACTACAGCTGGGTAAAGTTATATCTAACTCCTTAAGTACTACTGATCTCTTTAATGAACAAACTGTTTATAGTCTAACTATAAACTAACCCCTCTCGAGCCAGTGAGAGGATGAGACCTCATTGTTCAAGACCCGGAATTAGCCTTTAAGGGAGTAATTTATCTACTTACCCTAAGCACGGGAAGGAGTGAATTCCATCTTGTGAAGATATGTTCTTAGCTCCCTAATCAGACAAATCCCAAAATGGTAGGCTTATTGATTCAGCGATTTGGCCACTTTCACCCATGTAGATCAAAAGATTGCCCTCATTGACAGGAGTTCATAACTCACTCAGGATTCAGGTCGAGTTACCTATAGTCATCCTATGAAATGTTAATTTCTACAATTAATGGCATTACAAAGAGAAATTAAACATTTTGTGGTCTGGTTTTATACAAACTCTTTGTATAGGATACCTCCACTCACATGTCTCCACATGAACGATTAGGATCAAATCGTTTGTAACACTTTATAACTCCTTGTAACAATTGCAAAGTAGATCATATCTATAATGTTGACAGAATAAGGCACCCAACCTTATTCCTATACTACAGACCTTTTTGTTTATTACTTAACCATGATCCAACCTTGTATGTCAACCACATACATGTTTAAGTTTACATTAAATAACCATAGAATCTTAGTTTATTGGATTGAGTTAATGCATAAAATAGATAAAATAACTTCTTATTTTATTCATTAAATAAAATGTATATGCAATTTACAAATCTACAAAACCCAAGAGATCTAAAACACACTAGTCCCAACAAATACTACAGCTGGAGTTTTATGAAAAAAGCTAAAGCCCTTTGTCGGATTTGAATCGATGACTTGCCTTACTATACGCATCAAAATTTCGGACGAAGACAGTTTTCTGGCTGCTCCATATACATCTGCTTTGGGCCCAATGAGCATTCTAAAGAAATTCCAGTTAAGGACATTTTCGTTTTTTGTCCAAGAAATGTTGCAAGTTTTAGAGAATGATAGTTTTATACATACATTATGTAGTGCATGGTTTGAAGGAGGAAGATGCAGGGACAACTAACTGATTGTTGTTCTTCGCAAAGGATACATCGTTTCACTCAACCCTACGCAGTTACCATTAGTGTCATCGTTGATGATAATGGTAACTCAAACAATAAGCATGTACGTGTGACTGTCCATATGCTGACACGTAATGTAGTAGTTACACGTTGATTTACGGTCTCGTGAAAATTGAATCGGTAAACTAATTACTCGAGTAAATGAAGTTATGCTTCCCGATGTACACCAGCTAGTGTTATGACATAATCTCCATTCTATCTACTGTTCACTATTCATATTTATTGCTTGCAAATCTCAACTTCATTTATTATGTAGTAGGTAGCAATATCTTATTTACCTAATCTCATCATTAACTTAGATTTGCTTTCTCTCATTGTGTATTTATAGAGGGAACCTCAAGCTTTGTAAATCAGTTGAGTTAAGAAACAATATCAACTTATTTACTCCACTTGTCTCTTCATTTTCCTCTCTTCGTTCTCCCTCTTCTTCTTTATAAAAATCAAACCTGGTATTAGAGCCTTCAGTGGCTAATAGCTCTTCCGATCCTAACCAAACTAACAATAACACAGAAGGTGAAGTCACTAAAATGGCTACACCTTCATCAACACAAAGGAATTCGGCCACCAATAGCAATTCGGCTCCGGTTATTCAAAAATTTCAAGTGAGGTCCGGCACTTGTCGAGTCGACAACCCTTCTTTCACAAACCTACTGAATCAAGTGACTTCTATTAAGCTTGACAGAGGCAACTTTCTTCTCTGGCAAAACATAGTTCTTCCTAATTTAAGAAGCTACAAGCTAGGAGGCCACCTTACCAAGAAAAAATCAACACCTAAGCATTCAATCATCATCCCACCAAGTGAAAAAGAACCTCAAGGACTTGTTCTTCCTAATCCTGAGCACGACATCTAG

mRNA sequence

ATGGGGGTGGGGGGGGACTCCTTGTCTGAGCTTGCAGTCCCCGCGTGTGTATCAGAATATGAAGAGTCGTCCATGGACGTCTCAGGTGTTTTTACAAGAGTTAGTGGGCTCTCCGGCTCCGAACTTGACAATCACCGCGGAGCTGACGGCTCTTCCGATCCTAACCAAACTAACAATAACACAGAAGGTGAAGTCACTAAAATGGCTACACCTTCATCAACACAAAGGAATTCGGCCACCAATAGCAATTCGGCTCCGGTTATTCAAAAATTTCAAGTGAGGTCCGGCACTTGTCGAGTCGACAACCCTTCTTTCACAAACCTACTGAATCAAGTGACTTCTATTAAGCTTGACAGAGGCAACTTTCTTCTCTGGCAAAACATAGTTCTTCCTAATTTAAGAAGCTACAAGCTAGGAGGCCACCTTACCAAGAAAAAATCAACACCTAAGCATTCAATCATCATCCCACCAAGTGAAAAAGAACCTCAAGGACTTGTTCTTCCTAATCCTGAGCACGACATCTAG

Coding sequence (CDS)

ATGGGGGTGGGGGGGGACTCCTTGTCTGAGCTTGCAGTCCCCGCGTGTGTATCAGAATATGAAGAGTCGTCCATGGACGTCTCAGGTGTTTTTACAAGAGTTAGTGGGCTCTCCGGCTCCGAACTTGACAATCACCGCGGAGCTGACGGCTCTTCCGATCCTAACCAAACTAACAATAACACAGAAGGTGAAGTCACTAAAATGGCTACACCTTCATCAACACAAAGGAATTCGGCCACCAATAGCAATTCGGCTCCGGTTATTCAAAAATTTCAAGTGAGGTCCGGCACTTGTCGAGTCGACAACCCTTCTTTCACAAACCTACTGAATCAAGTGACTTCTATTAAGCTTGACAGAGGCAACTTTCTTCTCTGGCAAAACATAGTTCTTCCTAATTTAAGAAGCTACAAGCTAGGAGGCCACCTTACCAAGAAAAAATCAACACCTAAGCATTCAATCATCATCCCACCAAGTGAAAAAGAACCTCAAGGACTTGTTCTTCCTAATCCTGAGCACGACATCTAG

Protein sequence

MGVGGDSLSELAVPACVSEYEESSMDVSGVFTRVSGLSGSELDNHRGADGSSDPNQTNNNTEGEVTKMATPSSTQRNSATNSNSAPVIQKFQVRSGTCRVDNPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSIIIPPSEKEPQGLVLPNPEHDI
Homology
[Close]
BLAST of ClCG08G001770 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-09
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 93  VRSGTCRVDNPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHS 152
           + S T    NP    +LNQ+ S+KLDRGN+LLWQ + LP L+SYKL GHLT++   P   
Sbjct: 8   IGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHLTEENQCPPKF 67

Query: 153 IIIP 157
           II P
Sbjct: 68  IINP 71

[Close]
BLAST of ClCG08G001770 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 86  PVIQKFQVRSGTCRVDNPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKK 145
           P++    V SG     +P    LLNQ+TSIK+DRGNFLLWQN+ LP LRSYKL  +LT  
Sbjct: 9   PIVTPPAVVSGAV-FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGD 68

Query: 146 KSTPKHSII 155
           K  P   ++
Sbjct: 69  KPCPPTHLV 76

[Close]
BLAST of ClCG08G001770 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-07
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 102 NPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSIIIPPS 159
           NP    +LNQ+T+IKLDR N+LLW+ + LP L+ YKL GHLT +K  P+  + I  S
Sbjct: 21  NPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSS 77

[Close]
BLAST of ClCG08G001770 vs. NCBI nr
Match: KAA0049614.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK15972.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 97  TCRVDNPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSIIIP 156
           T    NP    +LNQ+T++KLDRGN+LLW+ + LP L+ YKL GHL+ +   P   I   
Sbjct: 14  TTNFTNPPLNQILNQLTTVKLDRGNYLLWETLALPILKGYKLDGHLSDECPCPPKLI--- 73

Query: 157 PSEKEPQGLVLPN 170
           P   +P G  + N
Sbjct: 74  PLTTQPSGSTVEN 83

[Close]
BLAST of ClCG08G001770 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-06
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 102 NPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSII 155
           NP    +LNQ+T++KLDR N+LLW+ + LP L+ YKL GHLT +   P H ++
Sbjct: 20  NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVL 72

[Close]
BLAST of ClCG08G001770 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-08
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 86  PVIQKFQVRSGTCRVDNPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKK 145
           P++    V SG     +P    LLNQ+TSIK+DRGNFLLWQN+ LP LRSYKL  +LT  
Sbjct: 9   PIVTPPAVVSGAV-FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGD 68

Query: 146 KSTPKHSII 155
           K  P   ++
Sbjct: 69  KPCPPTHLV 76

[Close]
BLAST of ClCG08G001770 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-07
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 102 NPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSIIIPPS 159
           NP    +LNQ+T+IKLDR N+LLW+ + LP L+ YKL GHLT +K  P+  + I  S
Sbjct: 21  NPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSS 77

[Close]
BLAST of ClCG08G001770 vs. ExPASy TrEMBL
Match: A0A5A7U2Z6 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00960 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.7e-07
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 97  TCRVDNPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSIIIP 156
           T    NP    +LNQ+T++KLDRGN+LLW+ + LP L+ YKL GHL+ +   P   I   
Sbjct: 14  TTNFTNPPLNQILNQLTTVKLDRGNYLLWETLALPILKGYKLDGHLSDECPCPPKLI--- 73

Query: 157 PSEKEPQGLVLPN 170
           P   +P G  + N
Sbjct: 74  PLTTQPSGSTVEN 83

[Close]
BLAST of ClCG08G001770 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-07
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 102 NPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSII 155
           NP    +LNQ+T++KLDR N+LLW+ + LP L+ YKL GHLT +   P H ++
Sbjct: 20  NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVL 72

[Close]
BLAST of ClCG08G001770 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-07
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 102 NPSFTNLLNQVTSIKLDRGNFLLWQNIVLPNLRSYKLGGHLTKKKSTPKHSII 155
           NP    +LNQ+T++KLDR N+LLW+ + LP L+ YKL GHLT +   P H ++
Sbjct: 20  NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFVL 72

The following BLAST results are available for this feature:
BLAST of ClCG08G001770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031745012.13.3e-0951.56uncharacterized protein LOC116405217 [Cucumis sativus][more]
XP_022151683.11.1e-0750.72uncharacterized protein LOC111019598 [Momordica charantia][more]
KAA0066132.16.9e-0750.88putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak... [more]
KAA0049614.11.2e-0642.47UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK15972.1 UBN2_3 d... [more]
XP_016902203.11.5e-0649.06PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
BLAST of ClCG08G001770 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G001770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DCW45.2e-0850.72uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7VCS13.3e-0750.88Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m... [more]
A0A5A7U2Z65.7e-0742.47UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S4E1U97.5e-0749.06uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1U67.5e-0749.06uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of ClCG08G001770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G001770.1ClCG08G001770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process