ClCG08G001580 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G001580
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr08: 3101746 .. 3104343 (-)
RNA-Seq Expression	ClCG08G001580
Synteny	ClCG08G001580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAACTTGTGGCAACGGAAGAGGGAGATGGCGTTCATGGATTGCATTATGTTGCCACCGGAAGCACCGATCTTACCACCAACACCCTTGTTACCGCTGGCATCATAGAATGGTCTAGGCCTTCGATAAGTCACGCTAATGTCGATGTTGATGCAAACAAGGATGAAGATAAGAGGAAAAGAAGGAGGAAGAAGAAGAAGAGTTGAAGAAGATGTTCAAAAAAATAATCAATGATTTTGGTAAAAGAATTGAGGCCCAAGTTGAGGCCCTTAATCACCGTGTTGGAGGCCTCGAGAAGGACTTAAAAGCAATAAAGAAATATTTGTGCCAAATGTTTAAGGTATGATAAAACAACAATAAAATTTTAGTATTTACATTTTGTTTTTGTTTATATTGAATAATTTATGTTCATGTAGGGTAAATATGTGATTGCAGAAATTTATTTTCCTAAGAATGATGGTGCCCATGAAGGTTGAAGTGATCAAAACGACGACGAACATGGAGGTTTGAGTGACCAGAGAGTACAACTGTATGATGACAATGAGGGCAACATTATAGCATGCTCTAGTCGATGGATGAGTTAGACGAAACATCGAGTATACATGATCAGAGAGATGAGGTATCACCGGGCAACAATAGATCATCAATGTGTTTGAGTTATTTATTTTTTGATGTTGTGTACTTAATAATAGTTACAAATAAATTTCTTGATTTTTGTAGACATTATTGTAAAAATAAAATAAAATATACTTTTTTTTAACGATTTTGTAGACATTATGTTTAAATATGTAATTAGTTTAAGTATGAAATTTTCTTATATTTGGATGATTTTGTAGACATTTTGTGAAGGCATTATGTGTAAGTATGAAATTTCCTTATTTTTTGATTGTTGGATCATTTTTAGATATTTTGTATTATTTTGGTTGATTTTGAATTAGTTTAATACTTTTGCACGATATTGAATGATTCTTATTTAGTTTTCATAGATTCCATGGATATTAGATTGTTGGATTATTTTTAGATATTTTGGATTATTTTGGTTGATTTTGGATTAGTTTAATACTTTTGCACAATACTAGATTATTCTTATTTAGTTTGCATGGATTGCATGAAAATTGTATTGTTGTATTATTTTTAGATACTTTGGATTATTTTGGTTGATTTTGGATTAGTTTAATACTTTTGCACGATATTGGATTATTCTTATTTAGTTTGCATGGATTGCATGAATATTGTATTGTTGGATCATTTTTAGATATTTTGGATTATTTTGGTTGATTTTGGATTAGTTTAATACTTTTGCACGATATTGAATGATTCTTATTTAGTTTGCATGGATTGCATGAATATTAGATTGTTGGATCATTTCTAGATATTTTTTCTATAATTTTGGTTGATTTTGGATTAGTTTGATACTTTTGCACGATATTGGATAATTCTTATTGAGCTTGCATAGATTACATGGATAGTAGAAGGTTGGATCATTTTTAGATATTTTTGGACGATTTTGCACGGTGTTATTTTTTGGTTGGTTAGATGATTTAATTTTATTATGTAGGTTATCGATATTTAAGTTCGCAAGATACTGGAAACGTGATAGAAGTTTTTGAGGGTCGAGTAAAAAGAAATCTTGGATGTTAACGATGCCTTGGAAAGACACAAGAAACGATGATAAGAGAAAAAATTAAGCACTACAAAACCCATCATCGACATACCCGAAGAACTTGACTTAAAATTCAATAAGTGGATGATCAGCACAGATCTGACTACTACACTACGAAGGAATAATTATGCTTATTTGGATAAAACAAGGTTTGATAGTCTCTTTGTGTCATATAAATGGTTGATTGACGAGGTATGAATAATTTATTTGTTGTAATTAATTTATAAAACTATTTCATTATTTGACACTCAACAAGGCCGTATAGGTCATAGACACTATATTGATGTTCATTAAGAAAAAATTGCAAATCCGTCTAGACTTGTGCCGTCGAACATTTGCCATAGCTGACCTTCTAGTGACGACATGTTCTAGCTTTTAGTTCTTATTACTCAATTTAAAAAATATTTGTTCACATTTAATGCTTATTCCACCAGAATTTTCTAAGACATGATGATCGTATTATTGATTAGAGTAAGGAGAAGAGCATTTTCAAGTACATCAAAGATGAACACACGAAACACGATGTACCTTGGAGTGATGTTGATGCTGTGTACATACCTTTGAATCTTTCTGGAATTCATTGGGTGCTTGTATGTGCAAACTTCGAGACCAAAGAGTTGATTGTTTATGACCCAATGGTTGTCCTTCACTCTAAAACAGATTTGGAACGTGAGCTGAGAATGGTACAAATTTTGTAAGTCTACTCGCTGCTGGTCGGGTTACGAAGTCTAATATTATAGCTTTAGATCGGTGGAGTATACGACGAGATGCTTCCGTGCCACAACTTGATGAAGGTGGTGATTGTGTCGATACCAAAACACATGATAGGGTGAGTTATTTTCGTAGGTAGTATACTATTCAAATTTGGGCCAATCATGTATTATTCGAATTAGTACATGTAATGAATGATGTTTAATTAAATATGCAAAAC

mRNA sequence

ATGCCAGAACTTGTGGCAACGGAAGAGGGAGATGGCGTTCATGGATTGCATTATGTTGCCACCGGAAGCACCGATCTTACCACCAACACCCTTGTTACCGCTGGCATCATAGAATGGTCTAGGCCTTCGATAAGTCACGCTAATGTCGATGTTGATGCAAACAAGGATGAAGATAAGAGGAAAAGAAGGAGGAAGAAGAAGAAGAGCCTCGAGAAGGACTTAAAAGCAATAAAGAAATATTTGTGCCAAATGTTTAAGAGTAAGGAGAAGAGCATTTTCAAGTACATCAAAGATGAACACACGAAACACGATGTACCTTGGAGTGATGTTGATGCTGTGTACATACCTTTGAATCTTTCTGGAATTCATTGGGTGCTTGTATGTGCAAACTTCGAGACCAAAGAGTTGATTGTTTATGACCCAATGGTTGTCCTTCACTCTAAAACAGATTTGGAACGTGAGCTGAGAATGGTACAAATTTTGTAAGTCTACTCGCTGCTGGTCGGGTTACGAAGTCTAATATTATAGCTTTAGATCGGTGGAGTATACGACGAGATGCTTCCGTGCCACAACTTGATGAAGGTGGTGATTGTGTCGATACCAAAACACATGATAGGGTGAGTTATTTTCGTAGGTAGTATACTATTCAAATTTGGGCCAATCATGTATTATTCGAATTAGTACATGTAATGAATGATGTTTAATTAAATATGCAAAAC

Coding sequence (CDS)

ATGCCAGAACTTGTGGCAACGGAAGAGGGAGATGGCGTTCATGGATTGCATTATGTTGCCACCGGAAGCACCGATCTTACCACCAACACCCTTGTTACCGCTGGCATCATAGAATGGTCTAGGCCTTCGATAAGTCACGCTAATGTCGATGTTGATGCAAACAAGGATGAAGATAAGAGGAAAAGAAGGAGGAAGAAGAAGAAGAGCCTCGAGAAGGACTTAAAAGCAATAAAGAAATATTTGTGCCAAATGTTTAAGAGTAAGGAGAAGAGCATTTTCAAGTACATCAAAGATGAACACACGAAACACGATGTACCTTGGAGTGATGTTGATGCTGTGTACATACCTTTGAATCTTTCTGGAATTCATTGGGTGCTTGTATGTGCAAACTTCGAGACCAAAGAGTTGATTGTTTATGACCCAATGGTTGTCCTTCACTCTAAAACAGATTTGGAACGTGAGCTGAGAATGGTACAAATTTTGTAA

Protein sequence

MPELVATEEGDGVHGLHYVATGSTDLTTNTLVTAGIIEWSRPSISHANVDVDANKDEDKRKRRRKKKKSLEKDLKAIKKYLCQMFKSKEKSIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHSKTDLERELRMVQIL

Homology

[Close]

BLAST of ClCG08G001580 vs. NCBI nr
Match: XP_038882332.1 (uncharacterized protein LOC120073583 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-16
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 50  DVDANKDEDKRKRRRKKKKSLEKDLKAIKKYLCQMFKSKEKSIFKYIKDEHTKHDVPWSD 109
           D+D  KDE+  +R R                   +  S EK + KY+  +HT +DVPWS+
Sbjct: 43  DIDGRKDENFLRRDRH-----------------TIDWSMEKKVLKYVHGKHTDYDVPWSN 102

Query: 110 VDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHSKTDLERELRMV 159
           VDAVY+P NLSG+HWVLVCA+F+ +ELI++D ++ LH   DLE E+R+V
Sbjct: 103 VDAVYMPFNLSGMHWVLVCADFQVRELIMFDSLIALHLNADLECEMRLV 134

[Close]

BLAST of ClCG08G001580 vs. NCBI nr
Match: XP_038885861.1 (sentrin-specific protease [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-16
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 87  SKEKSIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLH 146
           SK  ++ KY+  +HT +DVPWS+VDA+Y+P NLS +HWVLVC +F+ +ELIV+D ++VLH
Sbjct: 34  SKTTNVVKYVHGKHTDYDVPWSNVDAIYMPFNLSRMHWVLVCVDFQVRELIVFDSLIVLH 93

Query: 147 SKTDLERELR 157
              DLE E+R
Sbjct: 94  LNADLEHEMR 103

[Close]

BLAST of ClCG08G001580 vs. NCBI nr
Match: XP_022154364.1 (uncharacterized protein LOC111021646 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-08
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 91  SIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHSKTD 150
           S+  YI   H+ +D  W DVDAVY+P N+ G+HW+++C +F+  ELIV+D  + +     
Sbjct: 61  SMLSYIDGTHSDNDTRWMDVDAVYLPYNIGGVHWIVICIDFDEGELIVWDSFMNMTPLPQ 120

Query: 151 LERELR-MVQIL 162
           LE+EL+ M+ I+
Sbjct: 121 LEQELKPMITII 132

[Close]

BLAST of ClCG08G001580 vs. NCBI nr
Match: XP_022156568.1 (uncharacterized protein LOC111023442 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-06
Identity = 23/64 (35.94%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 95  YIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHSKTDLERE 154
           YI + H+ + + W +V+AVY+P N++G HWV++C +F   E++V+D +  + S   LE +
Sbjct: 3   YIDESHSDYPLKWREVEAVYLPFNVNGNHWVMICIDFVEGEIVVWDSLRAITSYASLEEQ 62

Query: 155 LRMV 159
           L+++
Sbjct: 63  LKVM 66

[Close]

BLAST of ClCG08G001580 vs. NCBI nr
Match: XP_022148308.1 (uncharacterized protein LOC111016993 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-06
Identity = 25/74 (33.78%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 88  KEKSIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHS 147
           +++SI  Y    HT + + W +VDA+YIP N+ G HWV+VC + E  E++V+D +  + +
Sbjct: 200 RDESIMGYTDGTHTDYPLRWMEVDAIYIPFNIRGKHWVMVCIDLEEGEIVVWDSLNSMTT 259

Query: 148 KTDLERELRMVQIL 162
              +E  L+++  +
Sbjct: 260 DHAMEDHLKVMHTI 273

[Close]

BLAST of ClCG08G001580 vs. ExPASy TrEMBL
Match: A0A6J1DLV0 (uncharacterized protein LOC111021646 OS=Momordica charantia OX=3673 GN=LOC111021646 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.6e-09
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 91  SIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHSKTD 150
           S+  YI   H+ +D  W DVDAVY+P N+ G+HW+++C +F+  ELIV+D  + +     
Sbjct: 61  SMLSYIDGTHSDNDTRWMDVDAVYLPYNIGGVHWIVICIDFDEGELIVWDSFMNMTPLPQ 120

Query: 151 LERELR-MVQIL 162
           LE+EL+ M+ I+
Sbjct: 121 LEQELKPMITII 132

[Close]

BLAST of ClCG08G001580 vs. ExPASy TrEMBL
Match: A0A6J1DQZ3 (uncharacterized protein LOC111023442 OS=Momordica charantia OX=3673 GN=LOC111023442 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 23/64 (35.94%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 95  YIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHSKTDLERE 154
           YI + H+ + + W +V+AVY+P N++G HWV++C +F   E++V+D +  + S   LE +
Sbjct: 3   YIDESHSDYPLKWREVEAVYLPFNVNGNHWVMICIDFVEGEIVVWDSLRAITSYASLEEQ 62

Query: 155 LRMV 159
           L+++
Sbjct: 63  LKVM 66

[Close]

BLAST of ClCG08G001580 vs. ExPASy TrEMBL
Match: A0A6J1D3R7 (uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016993 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 25/74 (33.78%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 88  KEKSIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHS 147
           +++SI  Y    HT + + W +VDA+YIP N+ G HWV+VC + E  E++V+D +  + +
Sbjct: 200 RDESIMGYTDGTHTDYPLRWMEVDAIYIPFNIRGKHWVMVCIDLEEGEIVVWDSLNSMTT 259

Query: 148 KTDLERELRMVQIL 162
              +E  L+++  +
Sbjct: 260 DHAMEDHLKVMHTI 273

[Close]

BLAST of ClCG08G001580 vs. ExPASy TrEMBL
Match: A0A6J1DID7 (uncharacterized protein LOC111020782 OS=Momordica charantia OX=3673 GN=LOC111020782 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 24/69 (34.78%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 88  KEKSIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHS 147
           +E++IF+Y+    + +D PWS+ D VY P+N+ G HWV++  +    +L V+D +  +  
Sbjct: 6   QERTIFRYVLGRQSDYDTPWSEADIVYTPMNIGGNHWVMIGIDLVEGDLTVWDSLQAITP 65

Query: 148 KTDLERELR 157
             DLE+ L+
Sbjct: 66  LEDLEKALK 74

[Close]

BLAST of ClCG08G001580 vs. ExPASy TrEMBL
Match: A0A6J1BWN0 (uncharacterized protein LOC111005406 OS=Momordica charantia OX=3673 GN=LOC111005406 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-06
Identity = 23/70 (32.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 88  KEKSIFKYIKDEHTKHDVPWSDVDAVYIPLNLSGIHWVLVCANFETKELIVYDPMVVLHS 147
           ++KSI  Y    H  + + W +VD +Y+P N+ G HWV+VC + E  E++V+D + ++ +
Sbjct: 58  RDKSIMGYTDGTHMDYPLRWMEVDVIYLPFNIRGKHWVMVCIDLEEGEIVVWDSLTLMTT 117

Query: 148 KTDLERELRM 158
              +E  L++
Sbjct: 118 NHAMEDHLKV 127

The following BLAST results are available for this feature:

BLAST of ClCG08G001580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882332.1	2.0e-16	44.95	uncharacterized protein LOC120073583 [Benincasa hispida]	[more]
XP_038885861.1	3.4e-16	55.71	sentrin-specific protease [Benincasa hispida]	[more]
XP_022154364.1	2.0e-08	41.67	uncharacterized protein LOC111021646 [Momordica charantia]	[more]
XP_022156568.1	2.4e-06	35.94	uncharacterized protein LOC111023442 [Momordica charantia]	[more]
XP_022148308.1	9.2e-06	33.78	uncharacterized protein LOC111016993 [Momordica charantia]	[more]

BLAST of ClCG08G001580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG08G001580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLV0	9.6e-09	41.67	uncharacterized protein LOC111021646 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DQZ3	1.2e-06	35.94	uncharacterized protein LOC111023442 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D3R7	4.5e-06	33.78	uncharacterized protein LOC111016993 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DID7	4.5e-06	34.78	uncharacterized protein LOC111020782 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1BWN0	5.8e-06	32.86	uncharacterized protein LOC111005406 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of ClCG08G001580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..73
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 53..159 e-value: 8.2E-9 score: 37.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..70
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 70..151 e-value: 1.2E-8 score: 35.1
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 91..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G001580.2	ClCG08G001580.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity