ClCG08G001550 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G001550
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMyb_DNA-bind_3 domain-containing protein
LocationCG_Chr08: 3012133 .. 3013090 (-)
RNA-Seq ExpressionClCG08G001550
SyntenyClCG08G001550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGATATGTAAACAAGCGGTAGGAAAAACTACAAGCATCTGTGAGGTAAGTTTGAGGATAGTAAACTTGTGGAGTCCCTAACAGAGCTGGTACAAAATGGAGGTTGGTGAGCTGATAATGGTACATTTAGGCTTGGTTATTTGCAACAATTGGAAAAGATGATGAGTGAGAAAATTCCAGGTTGCAACCTAAAAGCAACCCCACACCTTGAGTCTAGAATAAAGGTCCTAAAGAGGCAATGCAATGCAATAGCTTAACTGTTGGGTCCAACATGTAGTGGATTTTGTTGGAATGAAGAGGTAAAGAGTGTCGATGTTGAATAGAATATTTATGATGAGTGGGTAAAGGTAAGAATGTGTTTGCAAAATATTAAATAAAAATCATGCTTATATGTAATAATTATATATTTTCTATAATTAACATCCAAAGTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGTGGAGACACCTACTGATATGACATTCGATATGAATGAGACAGAGTAGAACATGCAATTACAATTGGATGAGTTTGAAATCCTAAACGCAGTACTCGGGAAAATATATTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGATCATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTATTGATATGGTGAAATTTATGAGTATGCAAACCATTGAGCTTCAAAGAATTTCTCCTTAGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTTCAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA

mRNA sequence

ATGGATGTAGATATTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGTGGAGACACCTACTGATATGACATTCGATATGAATGAGACAGATACTCGGGAAAATATATTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGATCATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTATTGATATGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTTCAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA

Coding sequence (CDS)

ATGGATGTAGATATTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGTGGAGACACCTACTGATATGACATTCGATATGAATGAGACAGATACTCGGGAAAATATATTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGATCATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTATTGATATGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTTCAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA

Protein sequence

MDVDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSIDMHKDEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPDYN
Homology
BLAST of ClCG08G001550 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-08
Identity = 46/156 (29.49%), Postives = 78/156 (50.00%), Query Frame = 0

Query: 6   HPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIP 65
           HPNAKG+ +K F H+++L+ +FGKDR       TP        E+   ++ + +E     
Sbjct: 111 HPNAKGMWKKPFPHYDDLSAVFGKDRA---DCHTP---EVRQTESPLNQDEIDEEPAEQS 170

Query: 66  TSRINGVGSFSRGSKRKQSS-PINSIDMHKDEKEVEALR----------------RQALD 125
           T R +     SRGSKRK+SS  +  ID+ K   E+++                  ++ ++
Sbjct: 171 TGRASVPTESSRGSKRKRSSFQVEMIDIVKSTVEMQSTHMGRLASWQNEKYELELKEVVN 230

Query: 126 KLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPDY 145
            +  + DL  ND+V + + +  D+ K D FLA P++
Sbjct: 231 AIYNIDDLEENDQVTLIDLIVTDIQKTDCFLAVPEH 260

BLAST of ClCG08G001550 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 52/180 (28.89%), Postives = 83/180 (46.11%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNET------------ 62
           V  HPNAKGLR K   H+++L V FGKDR     ++ P DM      T            
Sbjct: 25  VKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAEDAHFEAQDF 84

Query: 63  --------DTRENILGDETPTIPTSRINGVGSFSRGSKRK------------------QS 122
                   +T E+ + ++ P  PTS+   +G+ S GSKRK                  Q+
Sbjct: 85  YIPDPPMFNTTEDAIEEDLPNTPTSKPT-IGTSSGGSKRKRSGYTSEMVDVVRTNMRMQT 144

Query: 123 SPINSIDMHKDEKEVEALRRQAL--DKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP 143
           + +  +    D+KE + + R+ +  D+L+++ +L +ND V++   L  +V K   FL  P
Sbjct: 145 AHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVP 202

BLAST of ClCG08G001550 vs. NCBI nr
Match: XP_038877524.1 (uncharacterized protein LOC120069782 [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-06
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 0

Query: 4   DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE-----------TDT 63
           D HPNAKGL+ K F++++EL+++FGKDR   EG ETP D     +E            + 
Sbjct: 43  DSHPNAKGLKHKPFLYYDELSIVFGKDRATSEGSETPYDQASATDEHLEDIRLGSQVNEQ 102

Query: 64  RENI----------LGDETPTIPTSRINGVGSFSRGSKRKQS 85
           +E+I          + +  P  P SR  G  +  RG+KRK++
Sbjct: 103 QESIPDMNITTVDGMNEVFPDTPISRYTGSSNDMRGTKRKRT 144

BLAST of ClCG08G001550 vs. NCBI nr
Match: VVA26458.1 (PREDICTED: At2g29880 [Prunus dulcis])

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-06
Identity = 43/145 (29.66%), Postives = 67/145 (46.21%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETP 62
           V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ + +T  N  GD   
Sbjct: 116 VKVHNSAKGLRNKPFPHYDTLVEVFGKDRANGKGAEGPAEVIEDLTDNNT-FNFEGD--- 175

Query: 63  TIPTSRINGVGSFSRGSKRKQSSPINSIDMHK----DEKEVEALRRQALDKLQEMHDLNS 122
                   G+G  +   +         ++  K     E      R + +D+LQ++  L+ 
Sbjct: 176 --------GLGDMASTLRSFVDMTKTHLETMKWVLMSENATSERRAKIVDELQKIQGLSD 235

Query: 123 NDRVKVAEALFKDVYKIDLFLAAPD 144
            D +  A A+  D  KIDL    PD
Sbjct: 236 MDFIDAAAAIISDDAKIDLLFTLPD 248

BLAST of ClCG08G001550 vs. NCBI nr
Match: KAG6468192.1 (hypothetical protein ZIOFF_072763 [Zingiber officinale])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = 0

Query: 4   DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMN----ETDTRENILGD 63
           D HP A GLR K F H ++L  ++GKD   R   ETP+D   ++N    ETDT E+   +
Sbjct: 126 DSHPAAIGLRNKEFPHLDDLMFVWGKDHATRAKAETPSDAVEEINLCDEETDTFEHEKDE 185

Query: 64  ETPTIPTSRINGVGSFSRGSKRKQSSPINSI-----DMHKD--------EKEVEA--LRR 123
            T        +      R S+   SS  + +     + +++        +K++E+   + 
Sbjct: 186 HTKCQKDEESDYANQSIRKSETLDSSIYSQVCYCCYEANEEMKGISTYFKKQIESGDRKM 245

Query: 124 QALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP 143
           +  D+L E+ + +  + + V E +FKD +KID F A P
Sbjct: 246 KIYDELIELSEFSKQEIMDVGEYIFKDEHKIDNFFALP 283

BLAST of ClCG08G001550 vs. ExPASy TrEMBL
Match: A0A5E4FL81 (PREDICTED: At2g29880 OS=Prunus dulcis OX=3755 GN=ALMOND_2B024138 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 43/145 (29.66%), Postives = 67/145 (46.21%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETP 62
           V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ + +T  N  GD   
Sbjct: 116 VKVHNSAKGLRNKPFPHYDTLVEVFGKDRANGKGAEGPAEVIEDLTDNNT-FNFEGD--- 175

Query: 63  TIPTSRINGVGSFSRGSKRKQSSPINSIDMHK----DEKEVEALRRQALDKLQEMHDLNS 122
                   G+G  +   +         ++  K     E      R + +D+LQ++  L+ 
Sbjct: 176 --------GLGDMASTLRSFVDMTKTHLETMKWVLMSENATSERRAKIVDELQKIQGLSD 235

Query: 123 NDRVKVAEALFKDVYKIDLFLAAPD 144
            D +  A A+  D  KIDL    PD
Sbjct: 236 MDFIDAAAAIISDDAKIDLLFTLPD 248

BLAST of ClCG08G001550 vs. ExPASy TrEMBL
Match: A0A6P5U2X6 (uncharacterized protein At2g29880-like OS=Prunus avium OX=42229 GN=LOC110773273 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETP 62
           V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ +  T  N  GD   
Sbjct: 120 VKVHNSAKGLRNKPFPHYDTLVEVFGKDRANGKGAEGPAEVIEDLTDNST-FNFEGDGLD 179

Query: 63  TI----PTSRINGVGSFSRGSKRKQ-----------SSPINS-IDMHK-----------D 122
            I    PT++       +R +KR +           +S + S +D+ K            
Sbjct: 180 DINFSSPTTQTPICPPSTRPNKRARNDNWSQSMADMASTLRSFVDVTKTHLETVKCVLMS 239

Query: 123 EKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
           E      R + +D+LQ++  L+  D +  A A+  D  KIDL    PD
Sbjct: 240 ENATSERRGKIVDELQKIQGLSDMDVIDAAAAIISDDAKIDLLFTLPD 286

BLAST of ClCG08G001550 vs. ExPASy TrEMBL
Match: A0A2P6PUC3 (Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0284621 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.8e-05
Identity = 47/167 (28.14%), Postives = 76/167 (45.51%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENILG 62
           V +H +AKGLR K F+H++ L   FG+DR    G E P +   D+N      D  EN L 
Sbjct: 118 VKVHKDAKGLRMKPFIHYDSLIEAFGRDRANGLGAEGPAEADEDLNNENNYADIEENGLD 177

Query: 63  DETPTIPTSRINGVGSFSRGSKRKQ----------SSPINS-IDMHK-----------DE 122
           + T     +R +     +R  KR +          +S + S +D+ K           +E
Sbjct: 178 EITVPSSVTRNSANPPSARTRKRARDAYSQCLGDMASTLRSFVDVTKAHLETMQGLLMNE 237

Query: 123 KEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
                 R + +++L ++  +N  D ++ A A+  D  KIDL  + PD
Sbjct: 238 HVTSERRGKLVEELMKIEGINDYDVIEAAAAIIGDDSKIDLLFSLPD 284

BLAST of ClCG08G001550 vs. ExPASy TrEMBL
Match: A0A2P6PRT6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0274461 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.8e-05
Identity = 47/167 (28.14%), Postives = 76/167 (45.51%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENILG 62
           V +H +AKGLR K F+H++ L   FG+DR    G E P +   D+N      D  EN L 
Sbjct: 28  VKVHKDAKGLRMKPFIHYDSLIEAFGRDRANGLGAEGPAEADEDLNNENNYADIEENGLD 87

Query: 63  DETPTIPTSRINGVGSFSRGSKRKQ----------SSPINS-IDMHK-----------DE 122
           + T     +R +     +R  KR +          +S + S +D+ K           +E
Sbjct: 88  EITVPSSVTRNSANPPSARTRKRARDAYSQCLGDMASTLRSFVDVTKAHLETMQGVLMNE 147

Query: 123 KEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
                 R + +++L ++  +N  D ++ A A+  D  KIDL  + PD
Sbjct: 148 HVTSERRGKLVEELMKIEGINDYDVIEAAAAIIGDDSKIDLLFSLPD 194

BLAST of ClCG08G001550 vs. ExPASy TrEMBL
Match: A0A2P6QKN4 (Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0072391 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.6e-05
Identity = 44/168 (26.19%), Postives = 74/168 (44.05%), Query Frame = 0

Query: 3   VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETP 62
           V +H  AKGLR K F+H++ L   FG+DR    G E P +   D+N  +   ++ GD  P
Sbjct: 124 VKVHKEAKGLRLKPFIHYDSLVEAFGRDRANGLGAEGPAEADEDLNNDNEFVDLEGDGLP 183

Query: 63  --TIPTSRINGVGSFSRGSKRKQ-------------SSPINS-IDMHKDEKE-------- 122
              +PT       S S  ++ ++             +S + S +D+ K   E        
Sbjct: 184 ENVVPTPATRTTSSSSNSTRTRKRARDTYAQCLGDMASTLRSFVDVTKTHLETMKEVLLN 243

Query: 123 ---VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD 144
                  R + +++L ++  LN  D ++ A  +  D  KI+L  + PD
Sbjct: 244 DHATSTKRGKLVEELMKIEGLNDYDVLEAAATIIGDDSKIELLFSLPD 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887234.13.1e-0829.49uncharacterized protein LOC120077425 [Benincasa hispida][more]
XP_022158565.11.7e-0628.89uncharacterized protein LOC111025018 [Momordica charantia][more]
XP_038877524.14.9e-0635.29uncharacterized protein LOC120069782 [Benincasa hispida][more]
VVA26458.16.4e-0629.66PREDICTED: At2g29880 [Prunus dulcis][more]
KAG6468192.11.4e-0529.11hypothetical protein ZIOFF_072763 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5E4FL813.1e-0629.66PREDICTED: At2g29880 OS=Prunus dulcis OX=3755 GN=ALMOND_2B024138 PE=4 SV=1[more]
A0A6P5U2X61.2e-0529.76uncharacterized protein At2g29880-like OS=Prunus avium OX=42229 GN=LOC110773273 ... [more]
A0A2P6PUC35.8e-0528.14Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=R... [more]
A0A2P6PRT65.8e-0528.14Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0274461 PE=4... [more]
A0A2P6QKN47.6e-0526.19Putative Myb/SANT-like domain-containing protein OS=Rosa chinensis OX=74649 GN=R... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..95
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 5..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G001550.1ClCG08G001550.1mRNA