ClCG08G001270 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G001270
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionNADH-Ubiquinone oxidoreductase (complex I), chain 5 protein
LocationCG_Chr08: 2543696 .. 2545561 (-)
RNA-Seq ExpressionClCG08G001270
SyntenyClCG08G001270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTATTTTATTGTTAAGTATAGTTATGATTTTTTCAATTTATCTGTCTATTGATCAAATAAATAGTAGTTATATCTATCAATATGTATGGTCTTGGACTATAACTAATGATTTTTCTTTAGAGTTGGGCTACTTGATCAATCCACTTACTTGCATTATGCCAATATTAATCACGACTGTTGGAATTATGGTTCTTATTTATAGTGACAATTATAAGTCTCATGATCAAGGATATTTGAGATTTTTTTGCATATATGAGTTTGTTCAATATGTCAATGTTGGGATTAGTTACTAGTTCAAATTTGATCCAAATTTATATTTTTTGGGAATTGGTTGGAATGAGTTCTTATCAATTAATAGGTTTTCGGCTCACTTGACCTACTATGACGAGGGCTTGTCAAAAGGCATTTGTAACTAATCACATAGGAGATTTTGGTTTATTATTAGGGATTTTAGGTCTTTATTGGATAATAGGGAGTTCTGAATTTCGGGATTTATTGAAAATATTCGATAACTTGAATGATAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGCGTCATCCTATTATTTGCAGGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGTCCTACCCCTATTTCGACTCTTATACATGCTACCACAATGGTAGCAACGAGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTAAAGTAATACCTTACATCATGAATCTAATAGCTTTGTTAGGTATAATAACATTACTATTGGAAACTACTTTACCTCTTGCATAAAAAGATATTAAGAGAAGTTTAGCCTACTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATAGGGTCTTATCGAGTTGCTTTATTTTATTTGATTACTCATGCTTACTCGAAAGTGTTGTTGTTTTTAGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGTAGGATATTCTCCAAATAAAAGTAAGAATATGGTTCTTATGGGTGGTTTAACAAAGCATGTATGCTAATTACAAAAAAAAATGCTTTTTTATTAGGTACCCTTTCTCTTTGTGGTATCCCACCCCTTGCATGCCTTTGGTCTAAGATAAAATTCTTAATGATAGTTTGTTGTATTCACCGATTTTCGCAATAATAGTCTGTTCCACAGTAGGATTAACAACATTTTATATGTTTCACATCTACTTACTTACTTTTGATGGACATTTGAACCTTTATTGTAAAAACTATAGTGGAAGCTTCTCGGTCCATCAACTGAAAGGAAGAATCACTCATGTGAATTCTACTCATATAGAAAAGTGAATCAAGTATAGATTGCATTCACTAGGGAAAGGATCATTAGATCAGCTTTAGTCAGTCAATGCGAAGGTATCTTTCATAGCTTAGTAGCACTATTGTAGCAATTCGGATAATCGTAGGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTAGATCACATCCACCTAATAAATGAGATTTTGAGTTAGATATCTCTTGCTCAATTGTTCACTTTGCATAAACCCCCAATTTAGGTAGTCACTCCATTTCCTTGTTACCCCTTTCACCTATATAAATAAAGTACCTTACCCTCGCCATAATTCAGGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

mRNA sequence

ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

Coding sequence (CDS)

ATGGATCATACCGTTTATCTCATTTCCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTTTCCGACAGTAACCAAAAATCTTTGATGTATGTGGTTTTTTCAAGTCCGGTTGCTAAATCTGCTCAATTTCCTCTTCATGTATGCTTACCTAATGCTATGAGGGATCCTAGTCAATTATTCACTCAATGGAATCCGTTGCAGAAGTTCTATTTATTGTATCTTCGTTTCGATTGGTTAATAAATATTAGGTCTCACAAGAGTGAAGGTTCCTTGAGAACAACGATTAAAAGTTGTTTGCCTAACTTTGAAAAGAAAGAAAATAATAGACCCTCATTGGCTGTATAA

Protein sequence

MDHTVYLISNSYLNRSGTSTFSDSNQKSLMYVVFSSPVAKSAQFPLHVCLPNAMRDPSQLFTQWNPLQKFYLLYLRFDWLINIRSHKSEGSLRTTIKSCLPNFEKKENNRPSLAV
Homology
[Close]
BLAST of ClCG08G001270 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.9e-04
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 31  YVVFSSPVAKSAQFPLHVCLPNAMRDPSQL 61
           +++F  P+AKSAQFPLHV LP+AM  P+ +
Sbjct: 231 FLLFVGPIAKSAQFPLHVWLPDAMEGPTPI 260

The following BLAST results are available for this feature:
BLAST of ClCG08G001270 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG08G001270 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG08G001270 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG08G001270 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01010.13.9e-0456.67NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G001270.2ClCG08G001270.2mRNA