ClCG08G001160 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G001160
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transducin/WD40 repeat-like superfamily protein
Location	CG_Chr08: 2408204 .. 2417675 (-)
RNA-Seq Expression	ClCG08G001160
Synteny	ClCG08G001160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAGAAATCTTTTCTTCTCCGCTGCTGCAAGGTTAACTTCTCAGTTTGCGTGCAAGGTTACTAACTCCTCTGCTCTTCTCCGCCGCTGCTCGCCACAGCTCGCCAGCCGTCTCCGATTGTCGTTCACCAGCCGCTTTCGTTCGACGTCAGCCGCCGCCTCCGTCTGCGTTCGTGCGTGCGCCGTTGCACTTGCCTGCCACCGGCCACATCTCCTCTGCTAGCGCCGACAGCGTCCCCTCCGCTTGTGCCAACCGCCGCCAACCTTCCAGCGCCGCCGTTTCACGGTGGGTTCGCCAGATTCTTGTCGTTTTGGTAAATTTCAGTATTTCGTGAGTTTTCTTGGAGGTTATTGAATACCTTTTGATTCTTTGCCTTATTTGGTGGTTCCTAATGCGAATTGGTTTTAAATTGAAAATTGGGAACTTTTGGAGCCACTGTCCAACAACGTTAATGATCGATTTTTTCGATTTCAGATCAATTTTGGTGAGTAAAAGTACAATGTAAATGTTCTGGGTGACTGAAAATTGGGTTTCTAACCCCCTAATTTTTTAATGTGTTTAGGTTGGAATTTGAAGTTTGGAAGAAGAGTATTGGGACCTAATTGTATTTTGGGTAAGGCTATTGGTTCAATTGTTGAGTAAATTGTTTTGGATTTATGGCTAAAAATGATAAGTAGTGATCGATGATTTGGATCGAACAACCTTGTTGACCTTTAGATCTCAAACTCAAACACTTCAAATCAATATGATTTCAGCCCCTTGGAATGGCTAGACGACGGATTACTTAGACGACCTTGATGTTTGAATCACTCCACAAACAAGATTGAAGTCAAGCTTGAATGATTTTGAACATTTTAATGTAACATAACAAAGACACACTATCATAAAACACTTGAGAGAGGGTGAGATGAGCTACTTACCTCTTTGGTTGCTTCTATATTTTTCTTTTATGAGGGCTTAGAGATTTGGGTGGTTCTTTCTAACCTTGTGTTACAAATGAGCCTCTATAGGGTATTTATAGACCTCCACCTCCCATTTGATTTGATCCAATTGTTAGAATCTTTAGCTTTACCAAGAACTTTCTAGATTATGCTAGCTATTCTTAGACTTCTATAGAACTCTCTAGAAACATCTAGAAATTCATACATGTTCTAGAACATTCTAGAGGTATCTAGGATATTCACACACCTTTTAGAACTTTCTAGAGACATCTAGGAGATTCGTGGATGTTCTAAAACTTTCTAGAACTTTTCTTTTGCAAGTTTTGATGGTCTAGCATTGTGGTGCTCTTGGTTTGGGTCATCACATCTTGGGTGTGTAGAATGGAGTTAGGCCGAGCCTTGTAAAATTTATTTAATTACTAAATTAATATTTTGTTTGTTATTTATTTAATAACCAATAAGATTTATAGGTAAATCTTAACTTTAGTGTCTTAATTTTAAAAAATGGTATTCACTCGTTAAGTCTAGAACGATTGAATTTAAGAATGTAATTTTGTATAATATTTTCATACAAACTTGGGATGTTACAAAATGTCATAGAATTACAAAAGAAACATAGCTCAAAGCTAAAAGAGAGCTCAAAGAATCTTTTTCCTACCTTCTTCAAGTCTCCTCCAAGTCTCTTCCCTCTATCCAAACCACGAACAACGCTTCTTTCTCCTCTTGCTGCTAGCAACGTAACTTGGTCATCATCTCCTTCATCGGAACCATCACCTACATATTCCTCCTCTTGAGCTTGGTATCGAGCCTCTAACCGTTCCATACGTTCTATCAAAGCTTTCATAGCACGAAAATTGCATTCCATGGTTGCTTGTTGTGCTTGTTGCCTTCGTTCATTGGAGATAGTAGGTAATTCTTCGGGATTTGCCATGCCGAAAAAGAACAAAAAGGTAACCAAAAAAAAAAAAAAAAATAGGACCTCACAAGCACTCCCTCATGTGTTTCACTTGTTAATGTAGTTCACTCATATTTAACACTCAAGACTCTTATCAATGTACCACTCCCTCACTAACACACCCTCTCAAGTACAAAAGAATCACACTCCAAAACAACAATGTATATATTCAACAAAGTGAAAGAGCCAATATCAATTTAAAGTGTTTTTGAACAGCACACTCGGAATACAATCAAGAGTATTAGAGGAGCAATCCAAAAAACAACAAAGAAACGAGTTAAAATAAGACAATGAATATGGAAGGAACGAAAAGGATTAGAAAAAAAAAATAATAAAAAGAAGCAAACTTAGATCAAATGGAAAGATCAGAATGAGAAAGAAGGGGAAAGGTTAGCATTAGAAAGTGTAGAATTCAAAATATTAATTTAAATGTAACTCTCAACAAAAATAATTTATTATGTTGTTTAATTAGGGCTTAACAATATAAGAGTGATACATAATAGCAAGAAAGAGAACATTTAATGAGCCTAATTGTAACCACCAACATTTAATGACCAACATTGTTTCTTTTTTACAGATAATCAAAATTCAAACATGTTTTTACCACGAGCCATCCGAATTTGGAGATGACAAAGAATAACGAAATGTAGCTAAGAGATAGATATAAAACGTTGTAGAAGGCATCATCACGAAAAAGAAATGGAACAAACTTTTTCCTTTTTGTGAGACTAATTCAGAACATGCTAGAACTAAAGAATTGAAGCAAAGTATTAGAGAATTCAATAGATGAACACAACGAAAACATAGGTCCGATCAAAAAGCCTAATGCTCTAATACCAAATGTTAAGTAACCCTTGAGAATTTTGATCCAACAACCTAGTTAGGTAAGCAACACCTTTAGATCTAATACTCAAAACCCCCAAAACAACATGAAATCAACCCAAGAAATAAATTTTGCAAGGAATTTTACCTTGATGATCAAGATCAAGAGTAGAGAAAACTCGTTTCTAAACTTGAGATTCGAATCACACCAACCTTGTTAAGAAACAACACCTTTAGATCTAATACTCAAAACCCTCAAAACAACATGAAATTAACCCAAGGAATAAATTTTGCAAGGAATTTTACCTTGATGATCAAAGATCAAGAGTAGAGAAAACTCATTTCTAAACTCAAGATTCAAATCACACCAACCTTGTAACGACCCGACTTTTCTAACCAACACTGGTAATATATTGGAAAATGTAAATATAAATCACATATACCATGGTTTATTTTTTGATGTGTTTATAAATACACTAGAAAATGTAAATATACATCGCATATATTATTTGGTATATAATGCTATATATTGTATCAATTGTCTTGTTCATGCACTTATCAAATATAACTTGGTTTATTTCTAGAAAATTCAATTATATATAGTGTTGTACATTCCAAATATACCTTATCTTCTCTTTTGAAACTTCTTGCCAATTCTTACTTTCATTTATGAGGGCAACTATTTTCATATTTTTGGAGAAACTTTCCTTATTTTTGAAAAGAAAACCGTTTCGGGAAATTTATAACCACAAGAAACTTCTTTTATATGCTTCTTCTATTGTGTGTATATATAAACAATAAGAAAACTCATATTTTTTAATACATATAAACACAGTAAGAAGGCTGAAAAACTAATTTGGACCATATTTGATAGTTTTGGTTTTTCCAAATGCATTATGATTGAAAATATCTTTTGATGTGTTGATTAATGTAAGTTATGCATGATATTCATGAACAATTTCATGTTTTAGCATGACTAGAGTTATGCACGTTTTCCTTTACTCACCTTATAAATAAAGTTAAGTTATTATTGAAGTTTTTCGTTTTAAATTTCATACATAAAGTAATGGCCCAGTCAAAGTCCAGTCGACACATCTGCTCTTCAAATATCTCTTTTCTGTTTAATGTTATTTGGCACAATATCAATATACTCACGCTTCATGCAAATCTCTTGTTATTGTACATTGTGATACTTTCAGATAGCTTCGAATGTCTGCATTTGCGAACCCCAATCCTAATAAATCCTTTGAGGTAAGCAATTATTGATGTGTGCCTCATGCGTTGTAGATTTTGGATTTCAACTTAATTTGTAAATCAGTTTGATGCCTAGTTTTGTGTGGTTTAAACTTAAATGTTGTGTTTTCTAAATGTTTGTTTTTAGGTTGCTCAGCCTCCTAGTGATTCTGTGTCGAGCCTTAGTTTTAGTCCAAAGGCCAATCACTTGGTTGCGACTTCATGGGATAATCAGGTCCTTTTCTTTTCCCTTTTTTTTGTGCTCTTGCTTATTTAATCATTATTTTAATTTTTTATCCAGATTAAGGGTTACTTTTATGAAAACTAGGAAATTTTGATTGCTATTTTCAATTGGTTCTTTGGATATTGAGCAAATTAGCTAAGAGAATGTCAAACTGATATATAGCATTCGACGAAGTCCAGAATTTCATATTTAATGACTTCTGCAGGTTCGTTGTTGGGAAATAATGCAAAATGCAGGTAATGTTGTCAGCACGCCTAAGGCTTTTATATCCCACGATCAACCGGTATATAACAATTTAGTTTTGCTGTTTCTGATTTAATTAGAATTTTGTTGCTGTAAGATCCAAAACATGGCTAAGTTATATTGCACATTACTTTTTGGCTTAGGTTTTATGCTCAGCATGGAAGGATGATGGAACGACTGTGTTTTCTGGAGGCTGCGATAAACAAGTTAAAATGTGGCCCTTATTGTCAGGTGGTCAAGCCATGACGATAGCCATGCATGAAGCACCCGTCAAAGAAGTTGCTTGGATCCCTGAGTTGAGCCTATTGGCCTCTGGAAGCTGGGACAAGACAATAAAGTAAACACTAATTCGTTGATTCTTAGTTTATCTTCAAGTCATTTGAACATTCTGTGACATTTATATTCTCTTCTATATGAGTTGCACATTTTCATTATTAGAGCTCAGTTCATTGTTGTGGAACATTGCAAACATTCTGTGTCAGTTTAACACAATTTGTCTTGCTTGGCTGTTTTGATCTTGTTTCATTCGTTCATGTGGGCATGTGTTTGTTCAAATTAAGGCATGGGTATGCCAGATGTGTGGCTTTGACCTCTGCTTTTTTATGGTATGTTTTGATGTTATGTGTTGATGTAGTATTGCTCCCTAATTTTTTCCTCTAATGTTTTCATTGGGATATGGTTCTGTTAGGAACCAATGTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGAATGACCAATGTGGTACTTAAGGGCTTGGCTCTCCCACCTCAATAGCTAGTTGTTGATGTGTGGTTCTCTAAGGTGCTTAAGTACCTAACAGTTTCATCCTAAGATTAACTATGAATATGAGTGTACATTTGGTTTTAGCATGAAATCATATGCTGGATCATTTTAATTAGTCAGATTCATCTCATTAAGATGTTGCTGGAAACAAGCATGTTCATATCCATGGAGCACCGAGCACCTGACTCTCTCTCTCTCAGCATTTGCTCTTGGTTTGATATTCTGGAACTTGTGTCTTGCCAGTCACTTGTTAATACAATGAAGAATATCAAATGTGCCCTTTAGAGGCAGACAATTTATCGATTTCTGGTCTACATGTTCATTCTTTGCCTTCTGCTTGTCTACCATGTGAAAGAGTAATCTTAGATAGTGGTGAATTACCTATGTGTTCTAATTATGACGAAACTTCTTTTATGGGTTTTCTATCAATTCAGATACTGGGATACAAGGCAGCCAAACCCAGTACTTACACAACAACTTCCTGATCGTTGTTATTCAATGGCAGTGAGACATCCGCTAATGGTAGTTGGTACTGCAGATAGAAATCTCATAGTATTTGACCTTCGAGCTCCTCAGGTGTTGTTTTCTATTTTCTCTATCATCTCTCTCTATCTCTACCTCTAATGTAATAGCTAAAGTTGTTTAGAATATTATGTAAATTTCAATTTTTGACATTTGTTTATAGGGTCTTTCTGACTTCTTTTAAATGCCATTTTTCTTTTTATCTTTCATATTTCAACTCTAACCCAGTTAAGTGGTGACAGAGTGAACGTAAGAGAATTGTTTCACCCTTGAAGTATCAAACAAGATGTGTAGCTGCCTTTCCTGATCGGGAAGGTTTCTTGGTAATACTTCCATCCCTTGTATTCATTTGTTTAAATGTTTACTTTCCTTCAAGTAGAATTCTTTTATTCTATCTTGTCGATACTTTAGTTACTACTTCTTCAAGGTTCTTATTTCTTTACGCAATCAAGTCAATTTACTCATATTGTGAAATTGCTTGATCTGATTTCATTAACTATTCCAGGTTGGTTCAATAGAGGGAAGGGTTGGTGTCCATCACCTTGACGAGTCTATGGCAAATAAGAACTTCACTTTCAAGTGCCACAGGGATGGGTCTGAGATATATTCTGTCAACTCCTTGAACTTCCATCCTGTAAGTTTAGAATGTATTAAGTTATTTATTTATTGCAGCATAAAAAAATCCAAGAGACTCCAAAACTTTAACACAAAATTCCAAAAATACAGCTACCGCCTCCTTCAAGATAAAAGGAAACCTACCTACCAATTATTGTACGATGGGTTCAATGAAAAACATATATATGTAGGTGGAGTTCAAATCCTGGATCTTTCTACCTCCAATCAAGATGAGTCATCAATTAGATGCTAAAGATTACAAGCTTCCTTCACTTCCTCATCTCAAACATTTATTTCAGTGATGATCATCCACCATGGATGGCTTGCATCTCCTGATCTTTTAGTTTTAATAATACTTTCCAAAATCTTCTTTTCCATGGTTTCTAAATTCCAACCATCACTTTATGCCATTGGTTGTTTAGTTCTCTAAGAAATCTCTAAACCATTTGGCCAATGAAAAGATTATCCTTTTTTTTTTCCTTTAAATTTCCGACTCTCAACTGTCACTACATAAAAGCTTATCGTTCATCCAACTAGTTACTTGACGTATTCTCTTCATTTCCCCTCCAAAGAAATGCGCTCGACCCTTTCCATTTCTGCCACCTGCATTTGGCAAACGGGCTTATAATATTCAGGGAGGTTAGAAAGTACTGCATTACATGGAATCATCCTTCCAGCCTAGACTAGCAAAAATTGCTTCATGTATCAACTTTTCCTTGTGGTTATTTCTATAATAGGAGTTGGACCTAGGGAAAAAAAAAAGAAAGAAAGAAAAAAGCACCCCAAAGACATCTCCAACTATGTAAAAAGAAGACATTCTTACCTATAGTGGACTGTTGTTGACTATTTTTAAGATGGCAAGTATGTTTTCTTATTGGTGTGCTCTTGGAGTGGTTATTTTCTAAATTTAATGATTATTAATAGCAATTAACTATAGTTTGTTGTATCTTGATCTATGGTTTTTTGATCTTGCTGTTAATTGAACTGCACTTTCTTTCAGGTGCATCACACTTTTGCAACTGCAGGGTCGGATGGTGCTTTTAATTTCTGGGACAAGGATAGCAAACAGAGGCTTAAGGTTCCTCAGATTTTTATTAGATTTTTAACTGCATAATCCTCAGTCTTTTTCCATATTTATAAAATAGCTTGTGGTTGCATGGGAACTACGTTTATAAACAACTTTCTGACCCAGAACTTGTTTGGTGGGATAATGCTCCAAAATAAATTGCCCCTAAGTTTGTGGCTCAATTTAATATTTTCATATTAAACTTCATTTCCAGTTATTAGCTTTATGAACAGAGAAGATCAGTATGTTAATTTACGACAAATATTATGAGGGGAAACTTAATATGCATTGATGTACTTGAATTAAATGAACCTATGCAATACCTTCAGTTCAGCATCTAAGTTTTTTTTATTGGCAGTTTGGCACGATTAAAAATCTATATTAACAGAGGGAAAGGAGGAAAGAGAAAAACTTGCTAGAACATGTCTGCATACAATTTGTTTTAGTTTTACGCCAAAAACTGAGGGGAAACTTAATATGCATTGATGTACTTGAATTAAATGAACCTATGCAATACCTTCAGTTCAGCATCTAAGTTTTTTTTATTGGCAGTTTGGCATGATTAAAAATCTATATTAACATGAGAGGGAAAGGAGGAAAGAGAAAAACTTGCAAGAACATGTCTGCATACAATTTGTTTTAGTTTTACAATTAGTTACTTCTGTAATAAAAAACTTAAGGCAAATTATTTGTCCTATCTCCCAACACCGAACTATAGAAAATGTACATCTCACGCTCATTTAAACTGTTCTATGTAGGTGTATGACTTTTAAGTGCCAGATAATACTACCTTTTCCTTTGATCTTATTCACTTCTTGAAAATATTATGAGGTTTATTCTTAATGAATGAATGGTGAATGGTTATCCTTTTTTGCTTTCAGGCAATGTTACGGTGTAGTCAGCCCATAAGTTGTAGCACTTTCAACCAGGATGGGTCGATATTTGCATATTCAGTACGTATCACCTTAATTATTATTATTTTTAATTTTTTAAATTGCTGATGCTTGCTGATGCTCGATTCTTTAATTCTGCCACCACCTTCCCCCTCAAAGGTTACACGAACACACCTATTATAAACCGTTATTTTCAACATGAATAGCAACGTGCATTTCATTAGATGTATATCAGTCATTTGATAGTAGGTTTGTAATTGTAGCAAATAGACTTCATGGGTTGAGGGTTGGGAAAATAGTAGATAAACATTCCAAATAGTTCGTAAGTGGGGCCTATGGGAGAGCTTCTGAATTTCTTCATCATCTTTTAAGCTTTTTCTTTGTTCCCACTACAGTGTCTTTCTTTCAAATTCCTACCACGCCTCAACCCACCTGACGTGATTGAAAATATTTTAGAACCCAATGTGTGGAACTGCAAGTTATACGAATAACTTGGTGTTTCATGTCTATTACCTTTACCGTAACTGTTGTACATATGATATGGTATTCCTTGGGACTGAAATCTCGTGCTAGCGAACACTAGAAAGTTGTTATAAGTGAGCTGAATTCAACATGTGGAATTTGTATAGGTGTGCTACGATTGGAGTAAGGGGGCAGAAAATCACAACCCAGCAACAGCAAAGACTTACATTTACTTGCACCTCCCACAGGTACTTAGTGGTGTGGATAATTTTTTTATTTTTTTAATTTTTTTTTCCAGTTCTGAATTTTGCGTTTTGGATGTAGGAGGCTGAGGTTAAAGGCAAGCCTCGTGTTGGGGGCGGCGGAAGAAAGTAGTCCCTGTAAAATCCCTTTGCATGTATCTTTGTTGTTCTCTAATGTCAAATTACTAATAGGTTTAACTAGGCTTCCAAAAATCTTGAATATATTTCTAGTTTAGTACATAGACTATTTTTTGTATGATTGGAAAATAGTGAATTATCAAATACTTGAGAGATATCTACAGTTGGAATAGATGTTCATAAATGTTTGAAATCTCTGAGCAATCATGGTTTTTAGAAAAAAAACTGTAGGATGTATGAGAATATCACCTATGTTTCATAGGACTTATTAATGTTGATTTTGTTACTTCATTACATTCA

mRNA sequence

AAAAAAAAAAGAAATCTTTTCTTCTCCGCTGCTGCAAGGTTAACTTCTCAGTTTGCGTGCAAGGTTACTAACTCCTCTGCTCTTCTCCGCCGCTGCTCGCCACAGCTCGCCAGCCGTCTCCGATTGTCGTTCACCAGCCGCTTTCGTTCGACGTCAGCCGCCGCCTCCGTCTGCGTTCGTGCGTGCGCCGTTGCACTTGCCTGCCACCGGCCACATCTCCTCTGCTAGCGCCGACAGCGTCCCCTCCGCTTGTGCCAACCGCCGCCAACCTTCCAGCGCCGCCGTTTCACGGTGGGTTCGCCAGATTCTTGTCGTTTTGATCAATTTTGGTTGGAATTTGAAGTTTGGAAGAAGAGTATTGGGACCTAATTGTATTTTGGATAGCTTCGAATGTCTGCATTTGCGAACCCCAATCCTAATAAATCCTTTGAGGTTGCTCAGCCTCCTAGTGATTCTGTGTCGAGCCTTAGTTTTAGTCCAAAGGCCAATCACTTGGTTGCGACTTCATGGGATAATCAGGTTCGTTGTTGGGAAATAATGCAAAATGCAGGTAATGTTGTCAGCACGCCTAAGGCTTTTATATCCCACGATCAACCGGTTTTATGCTCAGCATGGAAGGATGATGGAACGACTGTGTTTTCTGGAGGCTGCGATAAACAAGTTAAAATGTGGCCCTTATTGTCAGGTGGTCAAGCCATGACGATAGCCATGCATGAAGCACCCGTCAAAGAAGTTGCTTGGATCCCTGAGTTGAGCCTATTGGCCTCTGGAAGCTGGGACAAGACAATAAAATACTGGGATACAAGGCAGCCAAACCCAGTACTTACACAACAACTTCCTGATCGTTGTTATTCAATGGCAGTGAGACATCCGCTAATGGTAGTTGGTACTGCAGATAGAAATCTCATAGTATTTGACCTTCGAGCTCCTCAGAGTGAACGTAAGAGAATTGTTTCACCCTTGAAGTATCAAACAAGATGTGTAGCTGCCTTTCCTGATCGGGAAGGTTTCTTGAATTCTTTTATTCTATCTTGTCGATACTTTAGTTACTACTTCTTCAAGGTTCTTATTTCTTTACGCAATCAAGTTGGTTCAATAGAGGGAAGGGTTGGTGTCCATCACCTTGACGAGTCTATGGCAAATAAGAACTTCACTTTCAAGTGCCACAGGGATGGGTCTGAGATATATTCTGTCAACTCCTTGAACTTCCATCCTGTGCATCACACTTTTGCAACTGCAGGGTCGGATGGTGCTTTTAATTTCTGGGACAAGGATAGCAAACAGAGGCTTAAGGCAATGTTACGGTGTAGTCAGCCCATAAGTTGTAGCACTTTCAACCAGGATGGGTCGATATTTGCATATTCATGTCTTTCTTTCAAATTCCTACCACGCCTCAACCCACCTGACGTGATTGAAAATATTTTAGAACCCAATGTGTGGAACTGCAAGTGTGCTACGATTGGAGTAAGGGGGCAGAAAATCACAACCCAGCAACAGCAAAGACTTACATTTACTTGCACCTCCCACAGTTCTGAATTTTGCGTTTTGGATGAGGCTGAGGTTAAAGGCAAGCCTCGTGTTGGGGGCGGCGGAAGAAAGTAGTCCCTGTAAAATCCCTTTGCATGTATCTTTGTTGTTCTCTAATGTCAAATTACTAATAGGTTTAACTAGGCTTCCAAAAATCTTGAATATATTTCTAGTTTAGTACATAGACTATTTTTTGTATGATTGGAAAATAGTGAATTATCAAATACTTGAGAGATATCTACAGTTGGAATAGATGTTCATAAATGTTTGAAATCTCTGAGCAATCATGGTTTTTAGAAAAAAAACTGTAGGATGTATGAGAATATCACCTATGTTTCATAGGACTTATTAATGTTGATTTTGTTACTTCATTACATTCA

Coding sequence (CDS)

ATGTCTGCATTTGCGAACCCCAATCCTAATAAATCCTTTGAGGTTGCTCAGCCTCCTAGTGATTCTGTGTCGAGCCTTAGTTTTAGTCCAAAGGCCAATCACTTGGTTGCGACTTCATGGGATAATCAGGTTCGTTGTTGGGAAATAATGCAAAATGCAGGTAATGTTGTCAGCACGCCTAAGGCTTTTATATCCCACGATCAACCGGTTTTATGCTCAGCATGGAAGGATGATGGAACGACTGTGTTTTCTGGAGGCTGCGATAAACAAGTTAAAATGTGGCCCTTATTGTCAGGTGGTCAAGCCATGACGATAGCCATGCATGAAGCACCCGTCAAAGAAGTTGCTTGGATCCCTGAGTTGAGCCTATTGGCCTCTGGAAGCTGGGACAAGACAATAAAATACTGGGATACAAGGCAGCCAAACCCAGTACTTACACAACAACTTCCTGATCGTTGTTATTCAATGGCAGTGAGACATCCGCTAATGGTAGTTGGTACTGCAGATAGAAATCTCATAGTATTTGACCTTCGAGCTCCTCAGAGTGAACGTAAGAGAATTGTTTCACCCTTGAAGTATCAAACAAGATGTGTAGCTGCCTTTCCTGATCGGGAAGGTTTCTTGAATTCTTTTATTCTATCTTGTCGATACTTTAGTTACTACTTCTTCAAGGTTCTTATTTCTTTACGCAATCAAGTTGGTTCAATAGAGGGAAGGGTTGGTGTCCATCACCTTGACGAGTCTATGGCAAATAAGAACTTCACTTTCAAGTGCCACAGGGATGGGTCTGAGATATATTCTGTCAACTCCTTGAACTTCCATCCTGTGCATCACACTTTTGCAACTGCAGGGTCGGATGGTGCTTTTAATTTCTGGGACAAGGATAGCAAACAGAGGCTTAAGGCAATGTTACGGTGTAGTCAGCCCATAAGTTGTAGCACTTTCAACCAGGATGGGTCGATATTTGCATATTCATGTCTTTCTTTCAAATTCCTACCACGCCTCAACCCACCTGACGTGATTGAAAATATTTTAGAACCCAATGTGTGGAACTGCAAGTGTGCTACGATTGGAGTAAGGGGGCAGAAAATCACAACCCAGCAACAGCAAAGACTTACATTTACTTGCACCTCCCACAGTTCTGAATTTTGCGTTTTGGATGAGGCTGAGGTTAAAGGCAAGCCTCGTGTTGGGGGCGGCGGAAGAAAGTAG

Protein sequence

MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTPKAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPELSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAPQSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRVGVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVRGQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK

Homology

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BLAST of ClCG08G001160 vs. NCBI nr
Match: XP_038890307.1 (protein RAE1 [Benincasa hispida])

HSP 1 Score: 602.4 bits (1552), Expect = 2.8e-168
Identity = 304/403 (75.43%), Postives = 317/403 (78.66%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNV STP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLL+GGQAMT+AMHEAPVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLAGGQAMTVAMHEAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           +SLL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSM+VRHPLMVVGTADRNLIVF+L+ P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMSVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           QSE KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QSEYKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAM RCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMSRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. NCBI nr
Match: XP_008459578.1 (PREDICTED: protein RAE1 [Cucumis melo] >XP_008459580.1 PREDICTED: protein RAE1 [Cucumis melo] >KAA0039292.1 protein RAE1 [Cucumis melo var. makuwa] >TYK00476.1 protein RAE1 [Cucumis melo var. makuwa])

HSP 1 Score: 600.5 bits (1547), Expect = 1.1e-167
Identity = 303/403 (75.19%), Postives = 317/403 (78.66%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           M+AFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ STP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           L+LL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSMAVRHPLMVVGTADRNLIVF+L+ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           QSE KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAM RCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMSRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. NCBI nr
Match: XP_011656080.1 (protein RAE1 [Cucumis sativus] >KGN52656.1 hypothetical protein Csa_009146 [Cucumis sativus])

HSP 1 Score: 599.7 bits (1545), Expect = 1.8e-167
Identity = 303/403 (75.19%), Postives = 317/403 (78.66%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           M+AFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ STP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           L+LL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSMAVRHPLMVVGTADRNLIVF+L+ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           QSE KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAM RCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMSRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. NCBI nr
Match: XP_022144434.1 (protein RAE1-like isoform X1 [Momordica charantia] >XP_022144435.1 protein RAE1-like isoform X1 [Momordica charantia])

HSP 1 Score: 599.7 bits (1545), Expect = 1.8e-167
Identity = 303/403 (75.19%), Postives = 318/403 (78.91%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNV STP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE
Sbjct: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           +SLL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSM VR+PLMVVGTADRNLIVF+L++P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQSP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           Q+E KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDES+ANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESLANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAMLRCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMLRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E+EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQESEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. NCBI nr
Match: XP_022955507.1 (protein RAE1-like [Cucurbita moschata] >XP_022955508.1 protein RAE1-like [Cucurbita moschata] >KAG7018381.1 Protein RAE1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 595.9 bits (1535), Expect = 2.6e-166
Identity = 302/403 (74.94%), Postives = 316/403 (78.41%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNV STP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMHEAPVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           +SLL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSM VR+PLMVVGTADRNLIVF+L+ P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           Q+E KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDES+ANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESLANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAMLRCSQPIS STFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMLRCSQPISSSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +      TC        +  E+EVKGKPRVGG GRK
Sbjct: 361 NHNPATAK------TCI----YLHLPQESEVKGKPRVGGSGRK 344

[Close]

BLAST of ClCG08G001160 vs. ExPASy Swiss-Prot
Match: Q38942 (Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2)

HSP 1 Score: 507.7 bits (1306), Expect = 1.2e-142
Identity = 253/402 (62.94%), Postives = 291/402 (72.39%), Query Frame = 0


Query: 3   AFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTPKA 62
           A AN NPNKS+EV   P+DS+SSLSFSP+A+ LVATSWDNQVRCWEI ++  ++ S PKA
Sbjct: 8   ATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKA 67

Query: 63  FISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPELS 122
            ISHDQPVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQ +T+AMHE P+  +AWIP ++
Sbjct: 68  SISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMN 127

Query: 123 LLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAPQS 182
           LLA+GSWDKT+KYWDTRQ NPV TQQLPD+CY+++V+HPLMVVGTADRNLIVF+L+ PQ+
Sbjct: 128 LLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQT 187

Query: 183 ERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRVGV 242
           E KRI SPLKYQTRCV AFPD++GFL                        VGSIEGRVGV
Sbjct: 188 EFKRIQSPLKYQTRCVTAFPDQQGFL------------------------VGSIEGRVGV 247

Query: 243 HHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKA 302
           HHLD+S  +KNFTFKCHRDG++IYSVNSLNFHPVH TFATAGSDGAFNFWDKDSKQRLKA
Sbjct: 248 HHLDDSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKA 307

Query: 303 MLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVRGQ 362
           M RC+QPI CS+FN DGSI+AY+                          C   + G    
Sbjct: 308 MSRCNQPIPCSSFNHDGSIYAYAA-------------------------CYDWSKGAENH 349

Query: 363 KITTQQQQRLTFTCTSHSSEFCVL-DEAEVKGKPRVGGGGRK 404
                         T+ SS F  L  E+EVK KPRVG  GRK
Sbjct: 368 N-----------PATAKSSIFLHLPQESEVKAKPRVGATGRK 349

[Close]

BLAST of ClCG08G001160 vs. ExPASy Swiss-Prot
Match: Q5FVA9 (mRNA export factor OS=Xenopus tropicalis OX=8364 GN=rae1 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.2e-84
Identity = 162/337 (48.07%), Postives = 206/337 (61.13%), Query Frame = 0


Query: 2   SAFANPNPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVVS 61
           +A  N NP K  EV  PP DS+S LSFSP     N L+A SW N VRCWE+  N   +  
Sbjct: 21  TATDNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTI-- 80

Query: 62  TPKAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWI 121
            PKA   H  PVL   W DDG+ VF+  CDK  KMW  L+  Q++ IA H+AP+K V W+
Sbjct: 81  -PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LNSNQSIQIAQHDAPIKTVHWV 140

Query: 122 --PELSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFD 181
             P  S + +GSWDK++K+WDTR PNP+LT QLP+RCY   V +P+ VV TA+R LIV+ 
Sbjct: 141 KAPNYSCIMTGSWDKSLKFWDTRSPNPLLTLQLPERCYCADVVYPMAVVATAERGLIVYQ 200

Query: 182 LRAPQSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSI 241
           L    SE +RI SPLK+Q RCVA F D++     F L                    GSI
Sbjct: 201 LENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFAL--------------------GSI 260

Query: 242 EGRVGVHHLD-ESMANKNFTFKCHRDG-------SEIYSVNSLNFHPVHHTFATAGSDGA 301
           EGRV +H+++  + A  NFTFKCHR          +IY+VN + FHPVH T AT GSDG 
Sbjct: 261 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTTAPQDIYAVNGIAFHPVHGTLATVGSDGR 320

Query: 302 FNFWDKDSKQRLKAMLRCSQPISCSTFNQDGSIFAYS 326
           F+FWDKD++ +LK   +  QPIS  +FN +G+IFAYS
Sbjct: 321 FSFWDKDARTKLKTSEQLDQPISACSFNHNGNIFAYS 333

[Close]

BLAST of ClCG08G001160 vs. ExPASy Swiss-Prot
Match: Q7ZWF0 (mRNA export factor OS=Danio rerio OX=7955 GN=rae1 PE=2 SV=2)

HSP 1 Score: 308.1 bits (788), Expect = 1.4e-82
Identity = 155/331 (46.83%), Postives = 202/331 (61.03%), Query Frame = 0


Query: 8   NPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVVSTPKAFI 67
           NP K  EV  PP DS+S L+FSP     N L+  SW N VRCWE+  N   V   PKA  
Sbjct: 27  NPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGGSWANDVRCWEVQDNGQTV---PKAQQ 86

Query: 68  SHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWI--PELS 127
            H  PVL   W DDG+ VF+  CDK  KMW  L+  QA+ IA HE P++ + WI  P  S
Sbjct: 87  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LNSNQAIQIAQHEGPIRTIHWIKAPNYS 146

Query: 128 LLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAPQS 187
            + +GSWDKT+K+WDTR PNP+++ Q+P+RCY   V +P+ VV TA+R LIV+ L    S
Sbjct: 147 CIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVYPMAVVATAERGLIVYQLENQPS 206

Query: 188 ERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRVGV 247
           E +RI SPLK+Q RCVA F D++     F L                    GSIEGRV +
Sbjct: 207 EFRRIESPLKHQHRCVAIFKDKQSKPTGFAL--------------------GSIEGRVAI 266

Query: 248 HHLD-ESMANKNFTFKCHRDG-------SEIYSVNSLNFHPVHHTFATAGSDGAFNFWDK 307
           H+++  + A  NFTFKCHR          +IY+VN+++FHPVH T AT GSDG F+FWDK
Sbjct: 267 HYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDK 326

Query: 308 DSKQRLKAMLRCSQPISCSTFNQDGSIFAYS 326
           D++ +LK   +  QPI+   FN +G+IFAY+
Sbjct: 327 DARTKLKTSEQLDQPITACCFNHNGNIFAYA 333

[Close]

BLAST of ClCG08G001160 vs. ExPASy Swiss-Prot
Match: P78406 (mRNA export factor OS=Homo sapiens OX=9606 GN=RAE1 PE=1 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 7.1e-82
Identity = 160/333 (48.05%), Postives = 202/333 (60.66%), Query Frame = 0


Query: 6   NPNPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVVSTPKA 65
           N NP K  EV   P DS+  LSFSP     N L+A SW N VRCWE+ Q++G  +  PKA
Sbjct: 25  NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV-QDSGQTI--PKA 84

Query: 66  FISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWI--PE 125
              H  PVL   W DDG+ VF+  CDK  KMW  LS  QA+ IA H+APVK + WI  P 
Sbjct: 85  QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPN 144

Query: 126 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 185
            S + +GSWDKT+K+WDTR  NP++  QLP+RCY   V +P+ VV TA+R LIV+ L   
Sbjct: 145 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQ 204

Query: 186 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 245
            SE +RI SPLK+Q RCVA F D++     F L                    GSIEGRV
Sbjct: 205 PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--------------------GSIEGRV 264

Query: 246 GVHHLD-ESMANKNFTFKCHRDG-------SEIYSVNSLNFHPVHHTFATAGSDGAFNFW 305
            +H+++  + A  NFTFKCHR          +IY+VN + FHPVH T AT GSDG F+FW
Sbjct: 265 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 324

Query: 306 DKDSKQRLKAMLRCSQPISCSTFNQDGSIFAYS 326
           DKD++ +LK   +  QPIS   FN +G+IFAY+
Sbjct: 325 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333

[Close]

BLAST of ClCG08G001160 vs. ExPASy Swiss-Prot
Match: Q5RF99 (mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 7.1e-82
Identity = 160/333 (48.05%), Postives = 202/333 (60.66%), Query Frame = 0


Query: 6   NPNPNKSFEVAQPPSDSVSSLSFSP---KANHLVATSWDNQVRCWEIMQNAGNVVSTPKA 65
           N NP K  EV   P DS+  LSFSP     N L+A SW N VRCWE+ Q++G  +  PKA
Sbjct: 25  NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV-QDSGQTI--PKA 84

Query: 66  FISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWI--PE 125
              H  PVL   W DDG+ VF+  CDK  KMW  LS  QA+ IA H+APVK + WI  P 
Sbjct: 85  QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPN 144

Query: 126 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 185
            S + +GSWDKT+K+WDTR  NP++  QLP+RCY   V +P+ VV TA+R LIV+ L   
Sbjct: 145 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQ 204

Query: 186 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 245
            SE +RI SPLK+Q RCVA F D++     F L                    GSIEGRV
Sbjct: 205 PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--------------------GSIEGRV 264

Query: 246 GVHHLD-ESMANKNFTFKCHRDG-------SEIYSVNSLNFHPVHHTFATAGSDGAFNFW 305
            +H+++  + A  NFTFKCHR          +IY+VN + FHPVH T AT GSDG F+FW
Sbjct: 265 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 324

Query: 306 DKDSKQRLKAMLRCSQPISCSTFNQDGSIFAYS 326
           DKD++ +LK   +  QPIS   FN +G+IFAY+
Sbjct: 325 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333

[Close]

BLAST of ClCG08G001160 vs. ExPASy TrEMBL
Match: A0A1S3CAI4 (protein RAE1 OS=Cucumis melo OX=3656 GN=LOC103498666 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 5.1e-168
Identity = 303/403 (75.19%), Postives = 317/403 (78.66%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           M+AFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ STP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           L+LL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSMAVRHPLMVVGTADRNLIVF+L+ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           QSE KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAM RCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMSRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. ExPASy TrEMBL
Match: A0A5D3BQD6 (Protein RAE1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00840 PE=4 SV=1)

HSP 1 Score: 600.5 bits (1547), Expect = 5.1e-168
Identity = 303/403 (75.19%), Postives = 317/403 (78.66%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           M+AFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ STP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           L+LL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSMAVRHPLMVVGTADRNLIVF+L+ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQTP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           QSE KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAM RCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMSRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. ExPASy TrEMBL
Match: A0A6J1CSA6 (protein RAE1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014118 PE=4 SV=1)

HSP 1 Score: 599.7 bits (1545), Expect = 8.7e-168
Identity = 303/403 (75.19%), Postives = 318/403 (78.91%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNV STP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHD PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE
Sbjct: 61  KASISHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           +SLL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSM VR+PLMVVGTADRNLIVF+L++P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQSP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           Q+E KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDES+ANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESLANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAMLRCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMLRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E+EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQESEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. ExPASy TrEMBL
Match: A0A0A0KXV7 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G649250 PE=4 SV=1)

HSP 1 Score: 599.7 bits (1545), Expect = 8.7e-168
Identity = 303/403 (75.19%), Postives = 317/403 (78.66%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           M+AFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGN+ STP
Sbjct: 1   MAAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNLASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMH+APVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHDAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           L+LL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSMAVRHPLMVVGTADRNLIVF+L+ P
Sbjct: 121 LNLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMAVRHPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           QSE KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QSEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAM RCSQPISCSTFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMSRCSQPISCSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +    T+          +  E EVKGKPRVGGGGRK
Sbjct: 361 NHNPATAK----TYIYLH------LPQEVEVKGKPRVGGGGRK 344

[Close]

BLAST of ClCG08G001160 vs. ExPASy TrEMBL
Match: A0A6J1GU54 (protein RAE1-like OS=Cucurbita moschata OX=3662 GN=LOC111457513 PE=4 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 1.3e-166
Identity = 302/403 (74.94%), Postives = 316/403 (78.41%), Query Frame = 0


Query: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTP 60
           MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNV STP
Sbjct: 1   MSAFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVASTP 60

Query: 61  KAFISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPE 120
           KA ISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMT+AMHEAPVKEVAWIPE
Sbjct: 61  KASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTVAMHEAPVKEVAWIPE 120

Query: 121 LSLLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAP 180
           +SLL SGSWDKT+KYWDTRQPNPV TQQLPDRCYSM VR+PLMVVGTADRNLIVF+L+ P
Sbjct: 121 MSLLVSGSWDKTLKYWDTRQPNPVHTQQLPDRCYSMTVRYPLMVVGTADRNLIVFNLQNP 180

Query: 181 QSERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRV 240
           Q+E KRIVSPLKYQTRCVAAFPD++GFL                        VGSIEGRV
Sbjct: 181 QNEFKRIVSPLKYQTRCVAAFPDQQGFL------------------------VGSIEGRV 240

Query: 241 GVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300
           GVHHLDES+ANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL
Sbjct: 241 GVHHLDESLANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 300

Query: 301 KAMLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVR 360
           KAMLRCSQPIS STFNQDGSIFAYS                          C   + G  
Sbjct: 301 KAMLRCSQPISSSTFNQDGSIFAYSV-------------------------CYDWSKGAE 344

Query: 361 GQKITTQQQQRLTFTCTSHSSEFCVLDEAEVKGKPRVGGGGRK 404
                T +      TC        +  E+EVKGKPRVGG GRK
Sbjct: 361 NHNPATAK------TCI----YLHLPQESEVKGKPRVGGSGRK 344

[Close]

BLAST of ClCG08G001160 vs. TAIR 10
Match: AT1G80670.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 507.7 bits (1306), Expect = 8.7e-144
Identity = 253/402 (62.94%), Postives = 291/402 (72.39%), Query Frame = 0


Query: 3   AFANPNPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTPKA 62
           A AN NPNKS+EV   P+DS+SSLSFSP+A+ LVATSWDNQVRCWEI ++  ++ S PKA
Sbjct: 8   ATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKA 67

Query: 63  FISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPELS 122
            ISHDQPVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQ +T+AMHE P+  +AWIP ++
Sbjct: 68  SISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMN 127

Query: 123 LLASGSWDKTIKYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAPQS 182
           LLA+GSWDKT+KYWDTRQ NPV TQQLPD+CY+++V+HPLMVVGTADRNLIVF+L+ PQ+
Sbjct: 128 LLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQT 187

Query: 183 ERKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRVGV 242
           E KRI SPLKYQTRCV AFPD++GFL                        VGSIEGRVGV
Sbjct: 188 EFKRIQSPLKYQTRCVTAFPDQQGFL------------------------VGSIEGRVGV 247

Query: 243 HHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKA 302
           HHLD+S  +KNFTFKCHRDG++IYSVNSLNFHPVH TFATAGSDGAFNFWDKDSKQRLKA
Sbjct: 248 HHLDDSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKA 307

Query: 303 MLRCSQPISCSTFNQDGSIFAYSCLSFKFLPRLNPPDVIENILEPNVWNCKCATIGVRGQ 362
           M RC+QPI CS+FN DGSI+AY+                          C   + G    
Sbjct: 308 MSRCNQPIPCSSFNHDGSIYAYAA-------------------------CYDWSKGAENH 349

Query: 363 KITTQQQQRLTFTCTSHSSEFCVL-DEAEVKGKPRVGGGGRK 404
                         T+ SS F  L  E+EVK KPRVG  GRK
Sbjct: 368 N-----------PATAKSSIFLHLPQESEVKAKPRVGATGRK 349

[Close]

BLAST of ClCG08G001160 vs. TAIR 10
Match: AT1G15850.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-52
Identity = 88/127 (69.29%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 8   NPNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTPKAFISHD 67
           NPN S+E+  P +DS+SSLSFSPKA+ LVATSWD QVRCWEI ++ G++ S PK  +SHD
Sbjct: 14  NPNNSYEITPPATDSISSLSFSPKADILVATSWDCQVRCWEITRSDGSIASEPKVSMSHD 73

Query: 68  QPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPELSLLASG 127
           QPVLCSAWKDDGTTVF+GGCDKQ KMWPLLSG Q  T+AMH+AP  ++AWIP ++LL +G
Sbjct: 74  QPVLCSAWKDDGTTVFTGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQIAWIPGMNLLVTG 133

Query: 128 SWDKTIK 135
           SWDKT+K
Sbjct: 134 SWDKTLK 140

[Close]

BLAST of ClCG08G001160 vs. TAIR 10
Match: AT3G19590.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-45
Identity = 113/345 (32.75%), Postives = 175/345 (50.72%), Query Frame = 0


Query: 9   PNKSFEVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTPKAFISHDQ 68
           P+   E++ PPSD +S+L FS  ++HL+ +SWD +VR +++  N      + K    H  
Sbjct: 6   PSAGRELSNPPSDGISNLRFSNNSDHLLVSSWDKRVRLYDVSTN------SLKGEFLHGG 65

Query: 69  PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPELSLLASGS 128
            VL   + DD  + FS G D +V+   + + G+   +  H+  V+ V +      + +GS
Sbjct: 66  AVLDCCFHDD-FSGFSVGADYKVRR-IVFNVGKEDILGTHDKAVRCVEYSYAAGQVITGS 125

Query: 129 WDKTIKYWDTR-----QPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAPQSE 188
           WDKT+K WD R     +   V T   P+R YSM++    +VV TA R++ ++DLR     
Sbjct: 126 WDKTVKCWDPRGASGPERTQVGTYLQPERVYSMSLVGHRLVVATAGRHVNIYDLRNMSQP 185

Query: 189 RKRIVSPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRVGVH 248
            +R  S LKYQTRCV  +P+  G+                         + S+EGRV + 
Sbjct: 186 EQRRESSLKYQTRCVRCYPNGTGY------------------------ALSSVEGRVAME 245

Query: 249 HLD--ESMANKNFTFKCHRDGSE----IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSK 308
             D  E+   K + FKCHR        +Y VNS+ FHP++ TFAT G DG  N WD ++K
Sbjct: 246 FFDLSEAAQAKKYAFKCHRKSEAGRDIVYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNK 305

Query: 309 QRLKAMLRCSQPISCSTFNQDGSIFAY-SCLSFKFLPRLNPPDVI 342
           +RL    +    IS  +F++DG + A  S  +F+   +   P+ I
Sbjct: 306 KRLYQYSKYPTSISALSFSRDGQLLAVASSYTFEEGEKSQEPEAI 318

[Close]

BLAST of ClCG08G001160 vs. TAIR 10
Match: AT1G49910.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-43
Identity = 111/340 (32.65%), Postives = 176/340 (51.76%), Query Frame = 0


Query: 14  EVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTPKAFISHDQPVLCS 73
           E++ PPSD +S+L FS  ++HL+ +SWD  VR ++     G+++   +    H   VL  
Sbjct: 10  ELSNPPSDGISNLRFSNNSDHLLVSSWDKSVRLYDA---NGDLM---RGEFKHGGAVLDC 69

Query: 74  AWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPELSLLASGSWDKTI 133
            + DD ++ FS   D +V+     + G+   +  HE PV+ V +      + +GSWDKTI
Sbjct: 70  CFHDD-SSGFSVCADTKVRRID-FNAGKEDVLGTHEKPVRCVEYSYAAGQVITGSWDKTI 129

Query: 134 KYWDTR-----QPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAPQSERKRIV 193
           K WD R     +   + T   P+R  S+++    +VV TA R++ ++DLR      +R  
Sbjct: 130 KCWDPRGASGTERTQIGTYMQPERVNSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQRRE 189

Query: 194 SPLKYQTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRVGVHHLD-- 253
           S LKYQTRCV  +P+  G+                         + S+EGRV +   D  
Sbjct: 190 SSLKYQTRCVRCYPNGTGY------------------------ALSSVEGRVSMEFFDLS 249

Query: 254 ESMANKNFTFKCHR---DGSEI-YSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKA 313
           E+   K + FKCHR   DG +I Y VN++ FHP++ TFA+ G DG  N WD ++K+RL  
Sbjct: 250 EAAQAKKYAFKCHRKSEDGRDIVYPVNAIAFHPIYGTFASGGCDGFVNIWDGNNKKRLYQ 309

Query: 314 MLRCSQPISCSTFNQDGSIFAY-SCLSFKFLPRLNPPDVI 342
             +    I+  +F++DG + A  S  +F+   + + PD I
Sbjct: 310 YSKYPTSIAALSFSRDGGLLAVASSYTFEEGDKPHEPDAI 317

[Close]

BLAST of ClCG08G001160 vs. TAIR 10
Match: AT1G69400.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-23
Identity = 78/316 (24.68%), Postives = 141/316 (44.62%), Query Frame = 0


Query: 14  EVAQPPSDSVSSLSFSPKANHLVATSWDNQVRCWEIMQNAGNVVSTPKAFISHDQPVLCS 73
           E   P  D+VS L FSP++N+L+  SWD+ +R ++       V S+  +   + Q  L  
Sbjct: 7   EFENPIEDAVSRLRFSPQSNNLLVASWDSYLRLYD-------VESSSLSLELNSQAALLD 66

Query: 74  AWKDDGTTVFSGGCDKQVKMWPLLSGGQAMTIAMHEAPVKEVAWIPELSLLASGSWDKTI 133
              ++ +T F+ G D  ++ +  L+ G   TI  H+     + +  E   + S  +D+ I
Sbjct: 67  CCFENESTSFTSGSDGFIRRYD-LNAGTVDTIGRHDDISTSIVYSYEKGEVISTGFDEKI 126

Query: 134 KYWDTRQPNPVLTQQLPDRCYSMAVRHPLMVVGTADRNLIVFDLRAPQSERKRIVSPLKY 193
           K+WDTRQ   ++                  +V   D ++ ++DLR      +   S ++ 
Sbjct: 127 KFWDTRQRESLVFSTDAGGAVGCVTVSGNNLVVCVDASMHIYDLRNLDEAFQSYASQVEV 186

Query: 194 QTRCVAAFPDREGFLNSFILSCRYFSYYFFKVLISLRNQVGSIEGRVGVHHLDESMANK- 253
             RC+ + P   G+                         VGS++GRV V   + S +++ 
Sbjct: 187 PIRCITSVPYSRGY------------------------AVGSVDGRVAVDFPNTSCSSEI 246

Query: 254 NFTFKCH---RDGS-EIYSVNSLNFHPV-HHTFATAGSDGAFNFWDKDSKQRLKAMLRCS 313
            ++F+CH   R+G  +   +N++ F P    TF T  ++G    W+  S++RL  + R S
Sbjct: 247 KYSFRCHPKSRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWNAKSRRRLNELPRYS 290

Query: 314 QPISCSTFNQDGSIFA 324
             I+   F+  G + A
Sbjct: 307 NSIASLAFDHTGELLA 290

The following BLAST results are available for this feature:

BLAST of ClCG08G001160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890307.1	2.8e-168	75.43	protein RAE1 [Benincasa hispida]	[more]
XP_008459578.1	1.1e-167	75.19	PREDICTED: protein RAE1 [Cucumis melo] >XP_008459580.1 PREDICTED: protein RAE1 [...	[more]
XP_011656080.1	1.8e-167	75.19	protein RAE1 [Cucumis sativus] >KGN52656.1 hypothetical protein Csa_009146 [Cucu...	[more]
XP_022144434.1	1.8e-167	75.19	protein RAE1-like isoform X1 [Momordica charantia] >XP_022144435.1 protein RAE1-...	[more]
XP_022955507.1	2.6e-166	74.94	protein RAE1-like [Cucurbita moschata] >XP_022955508.1 protein RAE1-like [Cucurb...	[more]

BLAST of ClCG08G001160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38942	1.2e-142	62.94	Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2	[more]
Q5FVA9	1.2e-84	48.07	mRNA export factor OS=Xenopus tropicalis OX=8364 GN=rae1 PE=2 SV=1	[more]
Q7ZWF0	1.4e-82	46.83	mRNA export factor OS=Danio rerio OX=7955 GN=rae1 PE=2 SV=2	[more]
P78406	7.1e-82	48.05	mRNA export factor OS=Homo sapiens OX=9606 GN=RAE1 PE=1 SV=1	[more]
Q5RF99	7.1e-82	48.05	mRNA export factor OS=Pongo abelii OX=9601 GN=RAE1 PE=2 SV=1	[more]

BLAST of ClCG08G001160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAI4	5.1e-168	75.19	protein RAE1 OS=Cucumis melo OX=3656 GN=LOC103498666 PE=4 SV=1	[more]
A0A5D3BQD6	5.1e-168	75.19	Protein RAE1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00840 P...	[more]
A0A6J1CSA6	8.7e-168	75.19	protein RAE1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014118 PE=4...	[more]
A0A0A0KXV7	8.7e-168	75.19	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]
A0A6J1GU54	1.3e-166	74.94	protein RAE1-like OS=Cucurbita moschata OX=3662 GN=LOC111457513 PE=4 SV=1	[more]

BLAST of ClCG08G001160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80670.1	8.7e-144	62.94	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G15850.1	1.6e-52	69.29	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G19590.1	1.9e-45	32.75	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G49910.1	1.7e-43	32.65	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G69400.1	2.0e-23	24.68	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 280..294 score: 29.22 coord: 35..49 score: 29.43 coord: 124..138 score: 44.73
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 57..95 e-value: 0.0013 score: 28.1 coord: 140..176 e-value: 80.0 score: 5.0 coord: 98..137 e-value: 1.2E-6 score: 38.0 coord: 9..48 e-value: 0.001 score: 28.4 coord: 249..293 e-value: 0.0011 score: 28.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 108..137 e-value: 6.0E-4 score: 20.6 coord: 21..47 e-value: 0.0028 score: 18.5 coord: 254..293 e-value: 0.023 score: 15.5 coord: 63..94 e-value: 0.0067 score: 17.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 105..146 score: 14.217871
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 63..104 score: 11.678087
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 268..302 score: 9.806668
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 16..49 score: 10.307941
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..328 e-value: 5.6E-95 score: 320.8
None	No IPR available	PANTHER	PTHR10971:SF27	PLANT POLY(A)+ RNA EXPORT PROTEIN	coord: 233..330 coord: 5..211
None	No IPR available	PANTHER	PTHR10971	MRNA EXPORT FACTOR AND BUB3	coord: 233..330
None	No IPR available	PANTHER	PTHR10971	MRNA EXPORT FACTOR AND BUB3	coord: 5..211
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 105..139 score: 11.075592
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 16..49 score: 8.676514
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 63..94 score: 9.203785
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 17..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G001160.2	ClCG08G001160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006405	RNA export from nucleus
biological_process	GO:0000972	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding