ClCG08G001090 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G001090
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial-like
LocationCG_Chr08: 2294929 .. 2297995 (+)
RNA-Seq ExpressionClCG08G001090
SyntenyClCG08G001090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGCGCTGCCACTGTTCGATTGTCGTCGCTCAATCTCAATTCTGAGCCTTGAAATTGTATGTACATTTCTTCGATTCTTGCCTGTTGCTCTTCTCGGTTCTGTTTTGATCCATTTTGAACCCTAGAAAATAAACTGCGATTTATTTGCTTTCTTTCCTCTTGAATTTTGAATCACTCTTTTGATTTGATTTGTTTGTCCTGCATGATTTTGCTTTTGCATTGCAGATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGATAATGGATTTTGCTCGTTTGTAAACTTAAGGTATGAATCTAGTGGAGTGGCGTGTTTATGATTGATGACCCACCCACGAAGAAATATATGAATTTTAATCTTCTGCAAACCCTACTATCATGATAATCATAGTTGGCCGACCTAATGCAATGCTAATTTTTTTATCCAACAAACTAACTGTACACATTCTAACCTATCACTTCTACACGATACCTTATAACAAAGATTTATGGAACTGAGTGTACCATCCTAAAAAAGAAGGTATGAACGTACATTATACATTTTTCGTTTTTGGAGAAAGCATAAACTGAGAGCTTTCTCAAGACAATGCATTTCTAGTCTTCTCTTGAGTTGATGTCTATTTGATCCTTAAAATTTCAAAATGATGACTTTAGGCTCTGGAGTTAAAGTTGATCGGATAGGTCTGATTTTATATTTTTTATTTAGATGAGGTGAATTTTTTATTATTTTTTTTTTTCCTTTCTCCTCTCCCTTCACACTCCTCTGCCCTTCCAGACTCTATTCCATCCCTCCACTAAAATCTTGGGTTACATGGGGAAAAAGGTTATCTCTTAAGAGATATACCCAAAAAGTCATTCTACGCCCAAATTTAAGAGAAAGACCAATTGAAAGAGATGGAAAGAAAAATGAAGAGAAATGAAGAGGAGAGCAATAAAACCAGGTTTAAAACTGAATAAAGAAGAAGAAGAGGGGAACTTGGTGAATTGGTCGTTTTTTATTTTTGGCCAGCGAAAAAAGATGTAAAGTGTAAAAATAAAAAGAATGAAAGTAGAGGAAGGCAATGCAACATAATCCTTTTAATTTTTTTTTAATTTCTCCTTCCCCTTTCGTTATTCCATATACCAAACATTCTTCAATCTTATTGTTTATCTTTCATGGCTTCTTTGCAAAAGCTCTCATCTTTAAACTTCAAATCCTCTCCACATCGCACAATTTAGATCTAGAATTGAAACACTTTTCAAAGCTTTAATTAACTATGATTCAACTTAAATTCAGCTAGTGTACTAAGTCAGACAATTTAAATCTTTCTTCACTTTCTCTCCTCGAAATTGGACACTTCTCAAAACTTTAATGTGATTTGTAGAGGGTTTGAAGTTCAAAGGCCATGAAAAATATAAAATAATTAAAAGAAAAAAACAATTATTCCTAAGATAAAAAGAATATAAAATTAATAAATATTGTGATGTCATTTTTCAATTAGTCAAGGGAGAGTTATAATTTTTCAAGCAATTCTCTCTAAAATTAAAACCGATAATGATTTTTTTTTACTATATTTTATTTTTGACCAAAACTACCACGAAATCACCTAAGTAACATCTTCTTATCCGAAAATTCTACCAAAATGATAAAAAGTTAAAATAATAATAATAATAATAAGGTTAAATCTTATTTTGTTCCAAAAATTTGAATAATGTTTTATTTTGGTCCCTAAACTTTTAAAAAAGTTTGTTTTAGTCCTTGAATTTTGAACATTGTTTTATTTTGGTCCCTAAATCTTTTAAAATGTTCGTTTGAATAATATTTTATTTTGGTCCCTAAACTTTTTAAAAAGTTTGTTTTAGTCCCTGAATTTTGAACATTGTTTTATTTTGGTCCCTAAACCTTTTAAAATGTTCATTTGTCTTTTACTTTTAAAAATTGCTTATTTTGGTACCTGCTATATTAAGATTTTGTTAACTCTTTAATAAAATCAGAAGTGACTTGTAATTTCGAATGTCTAGACTACCGAATAAGTTAACTGCACTAAAAAATCTATAATTTTTATTTTGAATAAGGTGGCAAAGTGATCAAATTTAAAAGATATTTTTAGTTCAAAAATATAAGTTCCCTCACATTTCTATTGAAGAGTTAACATAATTTTAATAGTAGGGACTAAAATAAATACTTTTTTTTAAAAGGTTAGGGACTAAAATGAAGGGTTTTTGAAAGTTTAAGAACCAAAATAGAACAAGATTCAAAGTTAAGGAAGTAAAATAGAATTTAAATCTAATAATAATAATTCTTCATAAAGGAAATAAAGGAAGAGAGAAAAAATTGCTCATAGTAATGAAAATTGCTTCAATTCACTCAATTCCTTCTCTCTATAATTACGTTAATCCCCACATTTAAATGTAAAAATGATGTATCAACGATTGTATCAACGATTTTAAAATGAACTTTTAAAAGTAATATTTTGATTTATTCACTTTTTAAAATTTATAGATTTAATTGATACAATTATTAGTTTAGAATTTTAAATAATTTGGCCTACAAAGTTTAGGAGTATAATTTAAAAAGTGGGTTCCATTTGATTATGTTTTTGGAAAATGTGGGTCTTGTCATAAATCTGTAATCAATAAAGGGGTTGTTTGTTTTGCGGGCATCTAGGCATCCTAGATTCTCATGGAGTGGGCATCCAGATTACCATGTTTGTTTTGCGGTTACAATACCTTGACATTGGGAGATTCTCGAGCATCTCAAAAGTTCTGGAGATTCTCGGGCATCTCAAGAGTTTTGGATGCCCTCCTGAAATATGGGTTTTCAGATTTCTGAGTTGA

mRNA sequence

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGCCTTGAAATTATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGATAATGGATTTTGCTCGTTTGTAAACTTAAGGGGTTGTTTGTTTTGCGGGCATCTAGGCATCCTAGATTCTCATGGAGTGGGCATCCAGATTACCATGTTTGTTTTGCGGTTACAATACCTTGACATTGGGAGATTCTCGAGCATCTCAAAAGTTCTGGAGATTCTCGGGCATCTCAAGAGTTTTGGATGCCCTCCTGAAATATGGGTTTTCAGATTTCTGAGTTGA

Coding sequence (CDS)

ATGGTAGATAGGGAGCAGTATACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTTCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCCCTGAAGATCGACGCCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGCCTTGAAATTATCAGTCGGAGTGGGTAGCAGAATCCTTCAAATGCTTGAACATAAGGATAATGGATTTTGCTCGTTTGTAAACTTAAGGGGTTGTTTGTTTTGCGGGCATCTAGGCATCCTAGATTCTCATGGAGTGGGCATCCAGATTACCATGTTTGTTTTGCGGTTACAATACCTTGACATTGGGAGATTCTCGAGCATCTCAAAAGTTCTGGAGATTCTCGGGCATCTCAAGAGTTTTGGATGCCCTCCTGAAATATGGGTTTTCAGATTTCTGAGTTGA

Protein sequence

MVDREQYTMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRALKLSVGVGSRILQMLEHKDNGFCSFVNLRGCLFCGHLGILDSHGVGIQITMFVLRLQYLDIGRFSSISKVLEILGHLKSFGCPPEIWVFRFLS
Homology
[Close]
BLAST of ClCG08G001090 vs. NCBI nr
Match: KAG6592356.1 (hypothetical protein SDJN03_14702, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-28
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  ALKL------SVGVGSRILQMLEHKDNGFCSFVNL 100
           AL+       +V VG RI +ML++ DNGF SFV L
Sbjct: 68  ALRFDDQFCRTVQVGGRIFEMLKNVDNGFSSFVRL 102

[Close]
BLAST of ClCG08G001090 vs. NCBI nr
Match: XP_038890134.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-22
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAARSKS EDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 60

Query: 69 RRALK 74
          RR  K
Sbjct: 61 RRGNK 65

[Close]
BLAST of ClCG08G001090 vs. NCBI nr
Match: XP_022973474.1 (succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 2.1e-21
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ESIVAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  A-LKLSVGVGSRI--LQMLEHKDNGFCSFVNL 100
           A +  +    S +  L+ L+ +   F SFV L
Sbjct: 68  ATINFAEQFKSVVESLKCLKMRTMDFSSFVRL 99

[Close]
BLAST of ClCG08G001090 vs. NCBI nr
Match: XP_022925400.1 (succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-20
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 0 

Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYR+FLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  ALKLSVGVGSR----ILQMLEHKDNGFCSFVNL 100
            + ++ G  S+     L+ L+     F SFV L
Sbjct: 68  -VTINFGKQSKSVVESLKCLKMWTMDFSSFVRL 99

[Close]
BLAST of ClCG08G001090 vs. NCBI nr
Match: KAG7025171.1 (SDH6-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-20
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 12 LSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRRA 71
          LSGLQKQVLSLYRAFLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRRA
Sbjct: 2  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRA 61

[Close]
BLAST of ClCG08G001090 vs. ExPASy Swiss-Prot
Match: B0K036 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhaf1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
          M++LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL 
Sbjct: 1  MSRLSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-SLPRSDVLRIEYLY 60

Query: 69 RRALKLSVGVGSRILQML 87
          RR        G R LQ+L
Sbjct: 61 RR--------GRRQLQLL 64

[Close]
BLAST of ClCG08G001090 vs. ExPASy Swiss-Prot
Match: A8PU71 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus OX=9913 GN=SDHAF1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 0 

Query: 9   MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
           M++ S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  + R + + IEYL 
Sbjct: 1   MSRHSRLQRQVLSLYRELLRAGRGKPGAEAR-----VRAEFRQHA-CLPRSDVLRIEYLY 60

Query: 69  RRALKLSVGVGSRILQMLEH-KDNGFCSFVNLRG 102
           RR        G R LQML         +FV  RG
Sbjct: 61  RR--------GRRQLQMLRSGHATAMGAFVRTRG 80

[Close]
BLAST of ClCG08G001090 vs. ExPASy TrEMBL
Match: A0A6J1IEP3 (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111472023 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYRAFLRAARSKS EDRRQ+ESIVAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  A-LKLSVGVGSRI--LQMLEHKDNGFCSFVNL 100
           A +  +    S +  L+ L+ +   F SFV L
Sbjct: 68  ATINFAEQFKSVVESLKCLKMRTMDFSSFVRL 99

[Close]
BLAST of ClCG08G001090 vs. ExPASy TrEMBL
Match: A0A6J1EHV2 (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111432701 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.5e-21
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 0 

Query: 11  KLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLRR 70
           KLSGLQKQVLSLYR+FLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR
Sbjct: 8   KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 71  ALKLSVGVGSR----ILQMLEHKDNGFCSFVNL 100
            + ++ G  S+     L+ L+     F SFV L
Sbjct: 68  -VTINFGKQSKSVVESLKCLKMWTMDFSSFVRL 99

[Close]
BLAST of ClCG08G001090 vs. ExPASy TrEMBL
Match: A0A1S3CAJ2 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103498675 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-20
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRALK 74
          RR  K
Sbjct: 61 RRGNK 65

[Close]
BLAST of ClCG08G001090 vs. ExPASy TrEMBL
Match: A0A0A0KST3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 9  MAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 68
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVA EFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLL 60

Query: 69 RRALK 74
          RR  K
Sbjct: 61 RRGNK 65

[Close]
BLAST of ClCG08G001090 vs. ExPASy TrEMBL
Match: A0A6A4MAN8 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_01121 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0 

Query: 8  TMAKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYL 67
          T AKLSG+QKQVL LYR FLRAAR+KSPE+RRQIESIV+AEFRRN+K +DRKNFI+IEYL
Sbjct: 5  TGAKLSGMQKQVLGLYRGFLRAARTKSPEERRQIESIVSAEFRRNSKLVDRKNFIYIEYL 64

Query: 68 LRRALKLSVGVGSRILQMLEHKDNGFCSFVN 99
          LRR     VGV        E +   F SF++
Sbjct: 65 LRRG---GVGVCMMSNAWKEEQHPAFISFIS 92

[Close]
BLAST of ClCG08G001090 vs. TAIR 10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 10 AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLR 69
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 70 RALK 74
             K
Sbjct: 64 LGTK 67

[Close]
BLAST of ClCG08G001090 vs. TAIR 10
Match: AT2G39725.2 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 10 AKLSGLQKQVLSLYRAFLRAARSKSPEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLLR 69
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++DRKNF +IEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 70 RALK 74
             K
Sbjct: 64 LGTK 67

The following BLAST results are available for this feature:
BLAST of ClCG08G001090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592356.13.9e-2877.89hypothetical protein SDJN03_14702, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038890134.19.4e-2295.38succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida][more]
XP_022973474.12.1e-2172.83succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima][more]
XP_022925400.11.4e-2069.89succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschat... [more]
KAG7025171.16.7e-2095.00SDH6-3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of ClCG08G001090 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B0K0361.1e-0446.15Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX... [more]
A8PU711.4e-0442.55Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus OX=9913 G... [more]
BLAST of ClCG08G001090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IEP31.0e-2172.83succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita maxim... [more]
A0A6J1EHV26.5e-2169.89succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita mosch... [more]
A0A1S3CAJ24.2e-2089.23succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656... [more]
A0A0A0KST31.2e-1987.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1[more]
A0A6A4MAN81.2e-1964.84Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
BLAST of ClCG08G001090 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39725.12.5e-1768.75LYR family of Fe/S cluster biogenesis protein [more]
AT2G39725.22.5e-1768.75LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 17..73
e-value: 2.1E-11
score: 43.7
NoneNo IPR availablePANTHERPTHR13675:SF1SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIALcoord: 10..72
NoneNo IPR availablePANTHERPTHR13675LYR MOTIF-CONTAINING PROTEIN 2coord: 10..72
NoneNo IPR availableCDDcd20268Complex1_LYR_SDHAF1_LYRM8coord: 13..85
e-value: 6.62356E-24
score: 86.4962

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G001090.2ClCG08G001090.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0034553 mitochondrial respiratory chain complex II assembly
biological_process GO:0009853 photorespiration
biological_process GO:0015979 photosynthesis
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid