ClCG08G000860 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACTTACCACCAGGTTTTGAAGCCAACCTTAGAACCAACAAAGTGTGCAAGTTAAAGAAATCCTTCTATGGTCTTAAGCAGCCTCCTAGAGCGTGGTTTGAACGTTTTGGTAGAGCAGTGACAGGTTATAGTTTCTGTCAAAGTCAAGTAGATTACACCATCTTCTACAAATATACTAGTCCGGCTGAGATGGTTGTGTAAATAGTGTATGTTGATGATATCATTCTCACAGGTAATGAAGAAGGTGAGATGAACAACTTGAAGGGTAAACTAGCTAATGACTTCCAAATTAAAGATTTGGGAACTTTGAAATACTTCCTAGGGACGAAATTTGCTAGGTCGAAACAAGGTATCCTTGTTAATCAGAGAAAATATTTTGTTGATTTACTGGAAGAGACGAAGTTACTTGGTTGTTGTACAACAGAAACCCATATTGAGCCAAACTTAGAATTGCAAGTTGCAAAGGATACAAAGATAAAAGACAAGGAGAAATATCAAGGACTATGGGAAGACTTGTTTATCTATCTCACACCTGTCCAGATATTGCTTTTGCTATCAGCATGGTAAGCCAGTTCATGCATGCCCCAGGGTCAACCCACTTTGAAGCCGTTTACGGAATTCTAAGATATTTGAAAGGGACTCCAAGAAAAGGGATACGATTTAAGAAGAATGGTCATTTACATGTGGAAATTTACACTAATGCTGACTGCGCAGGTAGTACAACAAATAGATCAATTTCTGGTTATTGTTCTTTTGTTGGAGGCAATCTAGTTACGTGGCGAAACAAAAAACAAAGTGTTGTAGCTAGGAGTAGTGCTGAAGTAGAATTTAGGGCTTTAGCCTATGACACTTGTGAAGGTAATAAAAAGGTAATGCCTATACGTGTTTAATGTGACAACAAGGCCACCATCTCCATAGCACACAACCCAGTCTTACATGATAGGACAAAACATATAGAGGTTGATAAACACTATATAAAGGAGAAGATTGATATTGGAGTGATATGTACAACATATCTCCCTACAACAGAGCAAATTGCTGATGTACTGACGAAGGGTTTGTCAAAATTACAATTGGACAAATTGATTAACAAGCTGGCAATGGAAGACATCTTTAAACCAGCTTGAGGGGGAGTGTTGATTTATGTCATAATATTTTATTTTATTTGGTTTTATTTACTGTAATTATTCCATAGGATGCTTTCCTTCTATGTCATTATTTCCTTATTTTATTAAATATGTATTCTATTTAAACTACCAAAAATAAAATAAAACAAAACTTGGGTTATTGGTTGGGTGAATTGTGCAAGGGAAGCTTTACAAACTTTGCTTGCGAAGAAATTAATGACTTCACAACTTGAACTATAATGAACTCTGCTGGTTGGAATTGGCCATTGAGTGCCTCATTTAAATTCTAACCTCTAAAATCCCACCTTCAATACCGTAAACACAGTGTTTTATTCGTCCGATATCAGAGGACAGAGGATACTTCCAGATGGAAAATTTCTGAAACCATTTATTCCAGATTTTACTACGTTCTTGACCATATTTGTGTTGTACGCCATTGATATCCTGCGAATGATCATGTAATTTTTGTTCAACTAACAAGTAATTCTTTGTTGATGGTTCTAGGTGTAGCATTAGTTCTTTGTCAAGCAGATCCAGTGCTTAATGATGGTCAGTCAGGAAATGATGATGGATCGAGAAAATCCGTGCTTGAAGGCGTACGCAGAAAGATAATCGAGAAAGTGGTGAGAGATCATGAAGATGAGAATGACGAAGGGTCTTCAAGTGATTAG ATGAACTTACCACCAGGTTTTGAAGCCAACCTTAGAACCAACAAAGTGTGCAAGTTAAAGAAATCCTTCTATGGTCTTAAGCAGCCTCCTAGAGCGTGGTTTGAACGTTTTGGTAGAGCAGTGACAGGTAATGAAGAAGGTGAGATGAACAACTTGAAGGGTAAACTAGCTAATGACTTCCAAATTAAAGATTTGGGAACTTTGAAATACTTCCTAGGGACGAAATTTGCTAGGTCGAAACAAGATATTGCTTTTGCTATCAGCATGGTAAGCCAGTTCATGCATGCCCCAGGGTCAACCCACTTTGAAGCCGTTTACGGAATTCTAAGATATTTGAAAGGGACTCCAAGAAAAGGGATACGATTTAAGAAGAATGGTCATTTACATGTGGAAATTTACACTAATGCTGACTGCGCAGGTAGTACAACAAATAGATCAATTTCTGGTTATTGTTCTTTTGTTGGAGGCAATCTAGTTACGTGGCGAAACAAAAAACAAAGTGTTGTAGCTAGGAGTAGTGCTGAAGTAGAATTTAGGGCTTTAGCCTATGACACTTGTGAAGGTGTAGCATTAGTTCTTTGTCAAGCAGATCCAGTGCTTAATGATGGTCAGTCAGGAAATGATGATGGATCGAGAAAATCCGTGCTTGAAGGCGTACGCAGAAAGATAATCGAGAAAGTGGTGAGAGATCATGAAGATGAGAATGACGAAGGGTCTTCAAGTGATTAG ATGAACTTACCACCAGGTTTTGAAGCCAACCTTAGAACCAACAAAGTGTGCAAGTTAAAGAAATCCTTCTATGGTCTTAAGCAGCCTCCTAGAGCGTGGTTTGAACGTTTTGGTAGAGCAGTGACAGGTAATGAAGAAGGTGAGATGAACAACTTGAAGGGTAAACTAGCTAATGACTTCCAAATTAAAGATTTGGGAACTTTGAAATACTTCCTAGGGACGAAATTTGCTAGGTCGAAACAAGATATTGCTTTTGCTATCAGCATGGTAAGCCAGTTCATGCATGCCCCAGGGTCAACCCACTTTGAAGCCGTTTACGGAATTCTAAGATATTTGAAAGGGACTCCAAGAAAAGGGATACGATTTAAGAAGAATGGTCATTTACATGTGGAAATTTACACTAATGCTGACTGCGCAGGTAGTACAACAAATAGATCAATTTCTGGTTATTGTTCTTTTGTTGGAGGCAATCTAGTTACGTGGCGAAACAAAAAACAAAGTGTTGTAGCTAGGAGTAGTGCTGAAGTAGAATTTAGGGCTTTAGCCTATGACACTTGTGAAGGTGTAGCATTAGTTCTTTGTCAAGCAGATCCAGTGCTTAATGATGGTCAGTCAGGAAATGATGATGGATCGAGAAAATCCGTGCTTGAAGGCGTACGCAGAAAGATAATCGAGAAAGTGGTGAGAGATCATGAAGATGAGAATGACGAAGGGTCTTCAAGTGATTAG MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAVTGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADCAGSTTNRSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCEGVALVLCQADPVLNDGQSGNDDGSRKSVLEGVRRKIIEKVVRDHEDENDEGSSSD Homology
BLAST of ClCG08G000860 vs. NCBI nr
Match: RVW93810.1 (Protein FORGETTER 1 [Vitis vinifera]) HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57 Identity = 124/236 (52.54%), Postives = 147/236 (62.29%), Query Frame = 0
BLAST of ClCG08G000860 vs. NCBI nr
Match: RVW77317.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57 Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0
BLAST of ClCG08G000860 vs. NCBI nr
Match: CAN76591.1 (hypothetical protein VITISV_020293 [Vitis vinifera]) HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57 Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0
BLAST of ClCG08G000860 vs. NCBI nr
Match: RVW26168.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 232.3 bits (591), Expect = 4.5e-57 Identity = 125/220 (56.82%), Postives = 145/220 (65.91%), Query Frame = 0
BLAST of ClCG08G000860 vs. NCBI nr
Match: CAN72986.1 (hypothetical protein VITISV_005624 [Vitis vinifera]) HSP 1 Score: 231.1 bits (588), Expect = 1.0e-56 Identity = 124/239 (51.88%), Postives = 147/239 (61.51%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 6.2e-25 Identity = 82/287 (28.57%), Postives = 119/287 (41.46%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 9.9e-23 Identity = 77/287 (26.83%), Postives = 119/287 (41.46%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19 Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 5.1e-19 Identity = 77/290 (26.55%), Postives = 109/290 (37.59%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15 Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A2N9GKJ5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27636 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 4.0e-59 Identity = 135/288 (46.88%), Postives = 161/288 (55.90%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A2N9G304 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21755 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58 Identity = 134/288 (46.53%), Postives = 159/288 (55.21%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A438IAS2 (Protein FORGETTER 1 OS=Vitis vinifera OX=29760 GN=FGT1_0 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 9.9e-58 Identity = 124/236 (52.54%), Postives = 147/236 (62.29%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A438GYS9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2807 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 9.9e-58 Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0
BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A5B9C7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020293 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 9.9e-58 Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0
BLAST of ClCG08G000860 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 130.2 bits (326), Expect = 2.3e-30 Identity = 86/291 (29.55%), Postives = 128/291 (43.99%), Query Frame = 0
BLAST of ClCG08G000860 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 97.8 bits (242), Expect = 1.2e-20 Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 0
BLAST of ClCG08G000860 vs. TAIR 10
Match: AT5G14240.1 (Thioredoxin superfamily protein ) HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13 Identity = 35/55 (63.64%), Postives = 48/55 (87.27%), Query Frame = 0
BLAST of ClCG08G000860 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08 Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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