ClCG08G000860 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G000860
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCG_Chr08: 1797710 .. 1799510 (+)
RNA-Seq ExpressionClCG08G000860
SyntenyClCG08G000860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTTACCACCAGGTTTTGAAGCCAACCTTAGAACCAACAAAGTGTGCAAGTTAAAGAAATCCTTCTATGGTCTTAAGCAGCCTCCTAGAGCGTGGTTTGAACGTTTTGGTAGAGCAGTGACAGGTTATAGTTTCTGTCAAAGTCAAGTAGATTACACCATCTTCTACAAATATACTAGTCCGGCTGAGATGGTTGTGTAAATAGTGTATGTTGATGATATCATTCTCACAGGTAATGAAGAAGGTGAGATGAACAACTTGAAGGGTAAACTAGCTAATGACTTCCAAATTAAAGATTTGGGAACTTTGAAATACTTCCTAGGGACGAAATTTGCTAGGTCGAAACAAGGTATCCTTGTTAATCAGAGAAAATATTTTGTTGATTTACTGGAAGAGACGAAGTTACTTGGTTGTTGTACAACAGAAACCCATATTGAGCCAAACTTAGAATTGCAAGTTGCAAAGGATACAAAGATAAAAGACAAGGAGAAATATCAAGGACTATGGGAAGACTTGTTTATCTATCTCACACCTGTCCAGATATTGCTTTTGCTATCAGCATGGTAAGCCAGTTCATGCATGCCCCAGGGTCAACCCACTTTGAAGCCGTTTACGGAATTCTAAGATATTTGAAAGGGACTCCAAGAAAAGGGATACGATTTAAGAAGAATGGTCATTTACATGTGGAAATTTACACTAATGCTGACTGCGCAGGTAGTACAACAAATAGATCAATTTCTGGTTATTGTTCTTTTGTTGGAGGCAATCTAGTTACGTGGCGAAACAAAAAACAAAGTGTTGTAGCTAGGAGTAGTGCTGAAGTAGAATTTAGGGCTTTAGCCTATGACACTTGTGAAGGTAATAAAAAGGTAATGCCTATACGTGTTTAATGTGACAACAAGGCCACCATCTCCATAGCACACAACCCAGTCTTACATGATAGGACAAAACATATAGAGGTTGATAAACACTATATAAAGGAGAAGATTGATATTGGAGTGATATGTACAACATATCTCCCTACAACAGAGCAAATTGCTGATGTACTGACGAAGGGTTTGTCAAAATTACAATTGGACAAATTGATTAACAAGCTGGCAATGGAAGACATCTTTAAACCAGCTTGAGGGGGAGTGTTGATTTATGTCATAATATTTTATTTTATTTGGTTTTATTTACTGTAATTATTCCATAGGATGCTTTCCTTCTATGTCATTATTTCCTTATTTTATTAAATATGTATTCTATTTAAACTACCAAAAATAAAATAAAACAAAACTTGGGTTATTGGTTGGGTGAATTGTGCAAGGGAAGCTTTACAAACTTTGCTTGCGAAGAAATTAATGACTTCACAACTTGAACTATAATGAACTCTGCTGGTTGGAATTGGCCATTGAGTGCCTCATTTAAATTCTAACCTCTAAAATCCCACCTTCAATACCGTAAACACAGTGTTTTATTCGTCCGATATCAGAGGACAGAGGATACTTCCAGATGGAAAATTTCTGAAACCATTTATTCCAGATTTTACTACGTTCTTGACCATATTTGTGTTGTACGCCATTGATATCCTGCGAATGATCATGTAATTTTTGTTCAACTAACAAGTAATTCTTTGTTGATGGTTCTAGGTGTAGCATTAGTTCTTTGTCAAGCAGATCCAGTGCTTAATGATGGTCAGTCAGGAAATGATGATGGATCGAGAAAATCCGTGCTTGAAGGCGTACGCAGAAAGATAATCGAGAAAGTGGTGAGAGATCATGAAGATGAGAATGACGAAGGGTCTTCAAGTGATTAG

mRNA sequence

ATGAACTTACCACCAGGTTTTGAAGCCAACCTTAGAACCAACAAAGTGTGCAAGTTAAAGAAATCCTTCTATGGTCTTAAGCAGCCTCCTAGAGCGTGGTTTGAACGTTTTGGTAGAGCAGTGACAGGTAATGAAGAAGGTGAGATGAACAACTTGAAGGGTAAACTAGCTAATGACTTCCAAATTAAAGATTTGGGAACTTTGAAATACTTCCTAGGGACGAAATTTGCTAGGTCGAAACAAGATATTGCTTTTGCTATCAGCATGGTAAGCCAGTTCATGCATGCCCCAGGGTCAACCCACTTTGAAGCCGTTTACGGAATTCTAAGATATTTGAAAGGGACTCCAAGAAAAGGGATACGATTTAAGAAGAATGGTCATTTACATGTGGAAATTTACACTAATGCTGACTGCGCAGGTAGTACAACAAATAGATCAATTTCTGGTTATTGTTCTTTTGTTGGAGGCAATCTAGTTACGTGGCGAAACAAAAAACAAAGTGTTGTAGCTAGGAGTAGTGCTGAAGTAGAATTTAGGGCTTTAGCCTATGACACTTGTGAAGGTGTAGCATTAGTTCTTTGTCAAGCAGATCCAGTGCTTAATGATGGTCAGTCAGGAAATGATGATGGATCGAGAAAATCCGTGCTTGAAGGCGTACGCAGAAAGATAATCGAGAAAGTGGTGAGAGATCATGAAGATGAGAATGACGAAGGGTCTTCAAGTGATTAG

Coding sequence (CDS)

ATGAACTTACCACCAGGTTTTGAAGCCAACCTTAGAACCAACAAAGTGTGCAAGTTAAAGAAATCCTTCTATGGTCTTAAGCAGCCTCCTAGAGCGTGGTTTGAACGTTTTGGTAGAGCAGTGACAGGTAATGAAGAAGGTGAGATGAACAACTTGAAGGGTAAACTAGCTAATGACTTCCAAATTAAAGATTTGGGAACTTTGAAATACTTCCTAGGGACGAAATTTGCTAGGTCGAAACAAGATATTGCTTTTGCTATCAGCATGGTAAGCCAGTTCATGCATGCCCCAGGGTCAACCCACTTTGAAGCCGTTTACGGAATTCTAAGATATTTGAAAGGGACTCCAAGAAAAGGGATACGATTTAAGAAGAATGGTCATTTACATGTGGAAATTTACACTAATGCTGACTGCGCAGGTAGTACAACAAATAGATCAATTTCTGGTTATTGTTCTTTTGTTGGAGGCAATCTAGTTACGTGGCGAAACAAAAAACAAAGTGTTGTAGCTAGGAGTAGTGCTGAAGTAGAATTTAGGGCTTTAGCCTATGACACTTGTGAAGGTGTAGCATTAGTTCTTTGTCAAGCAGATCCAGTGCTTAATGATGGTCAGTCAGGAAATGATGATGGATCGAGAAAATCCGTGCTTGAAGGCGTACGCAGAAAGATAATCGAGAAAGTGGTGAGAGATCATGAAGATGAGAATGACGAAGGGTCTTCAAGTGATTAG

Protein sequence

MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAVTGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADCAGSTTNRSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCEGVALVLCQADPVLNDGQSGNDDGSRKSVLEGVRRKIIEKVVRDHEDENDEGSSSD
Homology
BLAST of ClCG08G000860 vs. NCBI nr
Match: RVW93810.1 (Protein FORGETTER 1 [Vitis vinifera])

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57
Identity = 124/236 (52.54%), Postives = 147/236 (62.29%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
            M+ PPGFE +    KVCKLK+S YGLKQ PRAWFE FG+ +                   
Sbjct: 1348 MSPPPGFEESFGVGKVCKLKRSLYGLKQSPRAWFECFGKVIKHYGYTQSQVDHTMFYKHS 1407

Query: 61   -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDIA 120
                             TG++  E+  LKGKL  +F+IKDLG LKYFLG +FA+SK+ I 
Sbjct: 1408 NEGKVAILIVYVDDIVLTGDDCNELEKLKGKLVEEFEIKDLGALKYFLGMEFAKSKEGIF 1467

Query: 121  F------------AISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEI 180
                          +SMVSQFMHAPG  HFE VY ILRYLKGTP +G+ FK  GHL +E 
Sbjct: 1468 VNQRKYVLDLLDETVSMVSQFMHAPGPEHFEVVYRILRYLKGTPGRGLLFKSRGHLQIET 1527

Query: 181  YTNADCAGSTTN-RSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
            YT+AD AGS  + RS  GYCSFVGGNLVTWR+KKQ+VVARSSAE EFRA+A+  CE
Sbjct: 1528 YTDADWAGSIVDRRSTFGYCSFVGGNLVTWRSKKQNVVARSSAEAEFRAVAHGICE 1583

BLAST of ClCG08G000860 vs. NCBI nr
Match: RVW77317.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57
Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0

Query: 1   MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
           M+ PPGFE +    KVCKLKKS YGLKQ PRAWFERFG+ +                   
Sbjct: 157 MSPPPGFEESFGVGKVCKLKKSLYGLKQSPRAWFERFGKVIKHYGYTQSQADHTMFYKHS 216

Query: 61  -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDI- 120
                            TG++  E+  LKGKLA +F+IKDLG LKYFLG +FARSK+ I 
Sbjct: 217 NEGKVAILIVYVDDIVLTGDDCNELEKLKGKLAEEFEIKDLGALKYFLGMEFARSKEGIF 276

Query: 121 --------------AFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLH 180
                         AF++SMVSQFMHAPG  HFEAV  ILRYLKGT  +G+ FK  GHL 
Sbjct: 277 VNQQKYVLDFLDETAFSVSMVSQFMHAPGLEHFEAVCRILRYLKGTLGRGLLFKSRGHLQ 336

Query: 181 VEIYTNADCAGSTTN-RSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
           +E Y +A  AGS  + RS SGYCSFVGGNLVTWR+KKQ+VVARSSA+ EFRA+A+  CE
Sbjct: 337 IETYIDAYWAGSIVDQRSTSGYCSFVGGNLVTWRSKKQNVVARSSAKAEFRAVAHGICE 395

BLAST of ClCG08G000860 vs. NCBI nr
Match: CAN76591.1 (hypothetical protein VITISV_020293 [Vitis vinifera])

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-57
Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
            M+ PPGFE +    KVCKLKKS YGLKQ PRAWFERFG+ +                   
Sbjct: 1078 MSPPPGFEESFGVGKVCKLKKSLYGLKQSPRAWFERFGKVIKHYGYTQSQADHTMFYKHS 1137

Query: 61   -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDI- 120
                             TG++  E+  LKGKLA +F+IKDLG LKYFLG +FARSK+ I 
Sbjct: 1138 NEGKVAILIVYVDDIVLTGDDCNELEKLKGKLAEEFEIKDLGALKYFLGMEFARSKEGIF 1197

Query: 121  --------------AFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLH 180
                          AF++SMVSQFMHAPG  HFEAV  ILRYLKGT  +G+ FK  GHL 
Sbjct: 1198 VNQQKYVLDFLDETAFSVSMVSQFMHAPGLEHFEAVCRILRYLKGTLGRGLLFKSRGHLQ 1257

Query: 181  VEIYTNADCAGSTTN-RSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
            +E Y +A  AGS  + RS SGYCSFVGGNLVTWR+KKQ+VVARSSA+ EFRA+A+  CE
Sbjct: 1258 IETYIDAYWAGSIVDQRSTSGYCSFVGGNLVTWRSKKQNVVARSSAKAEFRAVAHGICE 1316

BLAST of ClCG08G000860 vs. NCBI nr
Match: RVW26168.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-57
Identity = 125/220 (56.82%), Postives = 145/220 (65.91%), Query Frame = 0

Query: 1   MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAVT-----------------G 60
           M+ PPGFE +    KVCKLKKS YGLKQ PRAWFE FG+ +                   
Sbjct: 388 MSPPPGFEESFGVGKVCKLKKSLYGLKQSPRAWFEHFGKVIKHYGYTQSQADHTMFYKHS 447

Query: 61  NEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDI---------------AFAIS 120
           NEE     LK KLA +F+IKDLG LKYFLG  FARSK+ I               AF++S
Sbjct: 448 NEE----KLKKKLAEEFEIKDLGVLKYFLGMGFARSKEGIFVNQRKYVLDLLDETAFSVS 507

Query: 121 MVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADCAGSTTN-RSI 180
           MVSQ MHAP   HFEAVY I RYLKGTP +G+ FK  GHL +E YT+AD AGS  + RS 
Sbjct: 508 MVSQLMHAPRPEHFEAVYRIPRYLKGTPGRGLLFKSRGHLQIETYTDADWAGSIVDRRST 567

Query: 181 SGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
           SGY SFVGGNL+TWR+KKQ+VVARSSAE EFRA+A+D C+
Sbjct: 568 SGYSSFVGGNLITWRSKKQNVVARSSAEAEFRAVAHDICD 603

BLAST of ClCG08G000860 vs. NCBI nr
Match: CAN72986.1 (hypothetical protein VITISV_005624 [Vitis vinifera])

HSP 1 Score: 231.1 bits (588), Expect = 1.0e-56
Identity = 124/239 (51.88%), Postives = 147/239 (61.51%), Query Frame = 0

Query: 1   MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
           M+ PPGFE +    KVCKLKKS YGLKQ PRAWFE FG+ +                   
Sbjct: 469 MSPPPGFEESFGVGKVCKLKKSLYGLKQSPRAWFEHFGKVIKHYGYTQSQADHTMFYKHS 528

Query: 61  -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDI- 120
                            TG++  E+  LK KLA +F+IKDLG LKYFLG +FARSK+ I 
Sbjct: 529 NEGKVVILIVYVDDIVLTGDDCNELEKLKEKLAEEFEIKDLGALKYFLGMEFARSKEGIF 588

Query: 121 --------------AFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLH 180
                         AF++SMVSQ MHAPG  HFE VY ILRYLKGTP +G+ FK  GHL 
Sbjct: 589 VNQRKYVLDLLDETAFSVSMVSQLMHAPGPEHFEVVYRILRYLKGTPGRGLLFKSRGHLQ 648

Query: 181 VEIYTNADCAGSTTN-RSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
           +E YT+AD AGS  + RS SGY SFVGGNL TWR+KKQ+VVARSS E EFRA+A+  C+
Sbjct: 649 IETYTDADWAGSIVDRRSTSGYSSFVGGNLFTWRSKKQNVVARSSVEAEFRAVAHGICD 707

BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.2e-25
Identity = 82/287 (28.57%), Postives = 119/287 (41.46%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERF----------------------- 60
            M+ PPGF    R N VCKL+K+ YGLKQ PRAW+                          
Sbjct: 1081 MSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQR 1140

Query: 61   GRA------------VTGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFAR------- 120
            G++            +TGN+   ++N    L+  F +KD   L YFLG +  R       
Sbjct: 1141 GKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL 1200

Query: 121  ---------------------------------------------------------SKQ 180
                                                                     ++ 
Sbjct: 1201 SQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRP 1260

Query: 181  DIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADCAGS 188
            DI++A++ +SQFMH P   H +A+  ILRYL GTP  GI  KK   L +  Y++AD AG 
Sbjct: 1261 DISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGD 1320

BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.9e-23
Identity = 77/287 (26.83%), Postives = 119/287 (41.46%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERF----------------------- 60
            M+ PPGF    R + VC+L+K+ YGLKQ PRAW+                          
Sbjct: 1064 MSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQR 1123

Query: 61   GRA------------VTGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFAR------- 120
            GR+            +TGN+   + +    L+  F +K+   L YFLG +  R       
Sbjct: 1124 GRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1183

Query: 121  ---------------------------------------------------------SKQ 180
                                                                     ++ 
Sbjct: 1184 SQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRP 1243

Query: 181  DIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADCAGS 188
            D+++A++ +SQ+MH P   H+ A+  +LRYL GTP  GI  KK   L +  Y++AD AG 
Sbjct: 1244 DLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGD 1303

BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 65  LGTLKYFLGTKFARSKQDIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKK 124
           +G L+Y   T     + DI++A+++V Q MH P    F+ +  +LRY+KGT   G+   K
Sbjct: 104 VGALQYLTLT-----RPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 163

Query: 125 NGHLHVEIYTNADCAGST-TNRSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAY 184
           N  L+V+ + ++D AG T T RS +G+C+F+G N+++W  K+Q  V+RSS E E+RALA 
Sbjct: 164 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 222

Query: 185 DTCE 188
              E
Sbjct: 224 TAAE 222

BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-19
Identity = 77/290 (26.55%), Postives = 109/290 (37.59%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERF----------------------- 60
            M  P GFE   + + VCKL KS YGLKQ PR W+ +F                       
Sbjct: 938  MEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRF 997

Query: 61   -------------GRAVTGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFAR------ 120
                            + G ++G +  LKG L+  F +KDLG  +  LG K  R      
Sbjct: 998  SENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRK 1057

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 1058 LWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGS 1117

BLAST of ClCG08G000860 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 79  SKQDIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADC 138
           ++ D+A A+ ++SQF   P  TH++A+  +LRYL+ T   G+ F + G   +  Y++AD 
Sbjct: 20  TRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADW 79

Query: 139 AGST-TNRSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCEGVALVL 194
           AG   + RS SGY   + G  V+WR+KKQ  VA SS E E+ AL+  T E V L +
Sbjct: 80  AGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWLTV 135

BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A2N9GKJ5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27636 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 4.0e-59
Identity = 135/288 (46.88%), Postives = 161/288 (55.90%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
            M+LPPGFE  L  +KVC+L+KS YGLKQ PRAWFERFGRAV                   
Sbjct: 739  MSLPPGFEERLGVDKVCRLRKSLYGLKQSPRAWFERFGRAVRRHGYCQSQADHTMFYKHS 798

Query: 61   -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQ--- 120
                             TG++  E+  LK +LA++F+IKDLG LKYFLG +FA+SK+   
Sbjct: 799  KEGKIAILIVYVDDIILTGDDSAELKKLKERLADEFEIKDLGALKYFLGMEFAKSKEGIF 858

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 859  VNQCKYVLDLLGETGMLGCKPAETPMEPNTKLQPAQTKSVVNKEQYQRLVGRLIYLSHTR 918

Query: 181  -DIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADCAG 188
             DIAF++SMVSQFMH+PG  HFEAVY ILRYLKGTP KG+ FKK+GHL +E YT+AD AG
Sbjct: 919  PDIAFSVSMVSQFMHSPGPEHFEAVYRILRYLKGTPGKGLPFKKSGHLQIEAYTDADWAG 978

BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A2N9G304 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21755 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 134/288 (46.53%), Postives = 159/288 (55.21%), Query Frame = 0

Query: 1   MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
           M+LPPGFE  L  +KVC+L+KS YGLKQ PRAWFERFGRAV                   
Sbjct: 443 MSLPPGFEERLGVDKVCRLRKSLYGLKQSPRAWFERFGRAVRRHGYCQSQADHTMFYKHS 502

Query: 61  -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQ--- 120
                            TG++  E+  LK +LA++F+IKDLG LKYFLG +FA+SK+   
Sbjct: 503 KEGKIAILIVYVDDIILTGDDSAELKKLKERLADEFEIKDLGALKYFLGMEFAKSKEGIF 562

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 563 VNQRKYVLDLLGETGMLGCKPAETPMEPNTKLQPAQTKSVVNKEQYQRLVGRLIYLSHTR 622

Query: 181 -DIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADCAG 188
            DIAF++SMVSQFMH+PG  HFEAVY ILRYLKGTP KG+ FKK GHL +E YT+AD AG
Sbjct: 623 PDIAFSVSMVSQFMHSPGPEHFEAVYRILRYLKGTPGKGLLFKKRGHLQIEAYTDADWAG 682

BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A438IAS2 (Protein FORGETTER 1 OS=Vitis vinifera OX=29760 GN=FGT1_0 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 9.9e-58
Identity = 124/236 (52.54%), Postives = 147/236 (62.29%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
            M+ PPGFE +    KVCKLK+S YGLKQ PRAWFE FG+ +                   
Sbjct: 1348 MSPPPGFEESFGVGKVCKLKRSLYGLKQSPRAWFECFGKVIKHYGYTQSQVDHTMFYKHS 1407

Query: 61   -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDIA 120
                             TG++  E+  LKGKL  +F+IKDLG LKYFLG +FA+SK+ I 
Sbjct: 1408 NEGKVAILIVYVDDIVLTGDDCNELEKLKGKLVEEFEIKDLGALKYFLGMEFAKSKEGIF 1467

Query: 121  F------------AISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEI 180
                          +SMVSQFMHAPG  HFE VY ILRYLKGTP +G+ FK  GHL +E 
Sbjct: 1468 VNQRKYVLDLLDETVSMVSQFMHAPGPEHFEVVYRILRYLKGTPGRGLLFKSRGHLQIET 1527

Query: 181  YTNADCAGSTTN-RSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
            YT+AD AGS  + RS  GYCSFVGGNLVTWR+KKQ+VVARSSAE EFRA+A+  CE
Sbjct: 1528 YTDADWAGSIVDRRSTFGYCSFVGGNLVTWRSKKQNVVARSSAEAEFRAVAHGICE 1583

BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A0A438GYS9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2807 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 9.9e-58
Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0

Query: 1   MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
           M+ PPGFE +    KVCKLKKS YGLKQ PRAWFERFG+ +                   
Sbjct: 157 MSPPPGFEESFGVGKVCKLKKSLYGLKQSPRAWFERFGKVIKHYGYTQSQADHTMFYKHS 216

Query: 61  -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDI- 120
                            TG++  E+  LKGKLA +F+IKDLG LKYFLG +FARSK+ I 
Sbjct: 217 NEGKVAILIVYVDDIVLTGDDCNELEKLKGKLAEEFEIKDLGALKYFLGMEFARSKEGIF 276

Query: 121 --------------AFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLH 180
                         AF++SMVSQFMHAPG  HFEAV  ILRYLKGT  +G+ FK  GHL 
Sbjct: 277 VNQQKYVLDFLDETAFSVSMVSQFMHAPGLEHFEAVCRILRYLKGTLGRGLLFKSRGHLQ 336

Query: 181 VEIYTNADCAGSTTN-RSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
           +E Y +A  AGS  + RS SGYCSFVGGNLVTWR+KKQ+VVARSSA+ EFRA+A+  CE
Sbjct: 337 IETYIDAYWAGSIVDQRSTSGYCSFVGGNLVTWRSKKQNVVARSSAKAEFRAVAHGICE 395

BLAST of ClCG08G000860 vs. ExPASy TrEMBL
Match: A5B9C7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020293 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 9.9e-58
Identity = 127/239 (53.14%), Postives = 150/239 (62.76%), Query Frame = 0

Query: 1    MNLPPGFEANLRTNKVCKLKKSFYGLKQPPRAWFERFGRAV------------------- 60
            M+ PPGFE +    KVCKLKKS YGLKQ PRAWFERFG+ +                   
Sbjct: 1078 MSPPPGFEESFGVGKVCKLKKSLYGLKQSPRAWFERFGKVIKHYGYTQSQADHTMFYKHS 1137

Query: 61   -----------------TGNEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARSKQDI- 120
                             TG++  E+  LKGKLA +F+IKDLG LKYFLG +FARSK+ I 
Sbjct: 1138 NEGKVAILIVYVDDIVLTGDDCNELEKLKGKLAEEFEIKDLGALKYFLGMEFARSKEGIF 1197

Query: 121  --------------AFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLH 180
                          AF++SMVSQFMHAPG  HFEAV  ILRYLKGT  +G+ FK  GHL 
Sbjct: 1198 VNQQKYVLDFLDETAFSVSMVSQFMHAPGLEHFEAVCRILRYLKGTLGRGLLFKSRGHLQ 1257

Query: 181  VEIYTNADCAGSTTN-RSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAYDTCE 188
            +E Y +A  AGS  + RS SGYCSFVGGNLVTWR+KKQ+VVARSSA+ EFRA+A+  CE
Sbjct: 1258 IETYIDAYWAGSIVDQRSTSGYCSFVGGNLVTWRSKKQNVVARSSAKAEFRAVAHGICE 1316

BLAST of ClCG08G000860 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-30
Identity = 86/291 (29.55%), Postives = 128/291 (43.99%), Query Frame = 0

Query: 1   MNLPPGFEA----NLRTNKVCKLKKSFYGLKQPPRAWFERFGRAVTG------------- 60
           M LPPG+ A    +L  N VC LKKS YGLKQ  R WF +F   + G             
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269

Query: 61  ----------------------NEEGEMNNLKGKLANDFQIKDLGTLKYFLGTKFARS-- 120
                                 N +  ++ LK +L + F+++DLG LKYFLG + ARS  
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAA 329

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 330 GINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQ 389

Query: 181 --KQDIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNAD 188
             + DI+FA++ +SQF  AP   H +AV  IL Y+KGT  +G+ +     + ++++++A 
Sbjct: 390 ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDAS 449

BLAST of ClCG08G000860 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-20
Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 65  LGTLKYFLGTKFARSKQDIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKK 124
           +G L+Y   T     + DI++A+++V Q MH P    F+ +  +LRY+KGT   G+   K
Sbjct: 104 VGALQYLTLT-----RPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 163

Query: 125 NGHLHVEIYTNADCAGST-TNRSISGYCSFVGGNLVTWRNKKQSVVARSSAEVEFRALAY 184
           N  L+V+ + ++D AG T T RS +G+C+F+G N+++W  K+Q  V+RSS E E+RALA 
Sbjct: 164 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 222

Query: 185 DTCE 188
              E
Sbjct: 224 TAAE 222

BLAST of ClCG08G000860 vs. TAIR 10
Match: AT5G14240.1 (Thioredoxin superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-13
Identity = 35/55 (63.64%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 185 TCEGVALVLCQADPVLNDGQSGNDDGSRKSVLEGVRRKIIEKVVRDHED-ENDEG 239
           T E VAL+LCQ++PVLNDG+ G+DD SR++V+ GVRR+ IE+VV+DHED +ND+G
Sbjct: 197 TPESVALLLCQSEPVLNDGKGGDDDSSREAVMAGVRRQFIERVVKDHEDKDNDDG 251

BLAST of ClCG08G000860 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 79  SKQDIAFAISMVSQFMHAPGSTHFEAVYGILRYLKGTPRKGIRFKKNGHLHVEIYTNADC 138
           ++ D+ FA++ +SQF  A  +   +AVY +L Y+KGT  +G+ +     L ++ + ++D 
Sbjct: 6   TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65

Query: 139 AG-STTNRSISGYCSFV 155
           A    T RS++G+CS V
Sbjct: 66  ASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW93810.12.0e-5752.54Protein FORGETTER 1 [Vitis vinifera][more]
RVW77317.12.0e-5753.14Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
CAN76591.12.0e-5753.14hypothetical protein VITISV_020293 [Vitis vinifera][more]
RVW26168.14.5e-5756.82Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
CAN72986.11.0e-5651.88hypothetical protein VITISV_005624 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Q94HW26.2e-2528.57Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT949.9e-2326.83Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925191.8e-1940.32Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
P109785.1e-1926.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV721.2e-1540.52Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A2N9GKJ54.0e-5946.88Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27636 PE=4 SV=1[more]
A0A2N9G3041.5e-5846.53Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A438IAS29.9e-5852.54Protein FORGETTER 1 OS=Vitis vinifera OX=29760 GN=FGT1_0 PE=4 SV=1[more]
A0A438GYS99.9e-5853.14Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A5B9C79.9e-5853.14Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020293 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.12.3e-3029.55cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.2e-2040.32DNA/RNA polymerases superfamily protein [more]
AT5G14240.11.1e-1363.64Thioredoxin superfamily protein [more]
ATMG00240.11.1e-0833.77Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 41..191
NoneNo IPR availablePANTHERPTHR11439:SF268ATP-DEPENDENT DNA HELICASEcoord: 41..191
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 131..191
e-value: 4.85746E-22
score: 86.3681

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G000860.2ClCG08G000860.2mRNA