ClCG08G000740 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG08G000740
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionF-box/LRR-repeat protein At3g26922-like isoform X2
LocationCG_Chr08: 1552559 .. 1556666 (+)
RNA-Seq ExpressionClCG08G000740
SyntenyClCG08G000740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTACTTCACAACATTGAACCATGTTGAAGAGCTCTCCATCGACGGCGGAGATTTGGATATTTCAAATTGGTGTCGCCACTTTACGATATGTCGTAGTTTCGAATTCTTGAAATCTCTTGAGATTGAAAATTTTTATTCACATTTTTTTTTTTTTTTTGAAGACCTTGAAGATGGCATGTTACCCAATTACCCACTTCTCGAACGTTTGATTCTACGAGGTTGTTGTTTCGAAAATGTCTACATTTGTGCCCCAAAACTTAAATACTTGGAATTAGGAACTCTGTCTTGTCGTGGATATAGATTCGGCACAAAGATGTTTTTGTGTACTCCTAAGCTAACATTTGTGAAATTAGATAATGTTGTACTCTATATGAATGCTACTGATAATTTTCTCTTTTTACAAAAAGTAGAATTTTCTCTCGATTATGAAATACCAATGCTTGATGATGATGAGACGAAGAAAGAAATCGTAGAAAATCAAACAAGTGTGTTTAATCTACTTCAAGAGGCAAATTCAATAACGCTTGATTCGATTTTTTTGGAGGTATTTATATACATGTGGTTTGAATAATTTGGTTTTATACATATGAAATAATTTTTGTAACAATTTTGTTTGGACTTTTTGGTTTCAGGAGCTTTCAGAGTTTATAATCTAATTGTTATAAATGACTCTCTAGAGCATTCTTTACAATTACACTTTTTTCTCATATATTTTAGATAATTCTTCAATCTACTCTAAGCATCTACTACAAGTAATATCTCTAGACTATTCTAATACTTGTTATTTTTAGAAATTTGGCTTTTGTTTTGGACTAAGTCTAAATACTTCTAACCCAAAATCAAGTTTATATTTTAACACACAGAGACATATGGGTACTAGTATTTCGCCCGGTTCGAGTCCGGGCCGTGTGTTGAACCGGGTATAGACAAAATTCCTTTATTTTCTTGGCCCAACCAGGTGTTCCTTTTTTTTTCTCTCTCTCTTTTAACTTTTTAATTATATTAATTTATTTTATACTACCTACTTTAACACTAGTTTCTTATAAATGGTAGGGAAATGCCTCATGTTTTGGATTTGTTTTGGTGGTGTTTGTAATGAAAGGGAAAAAAATATTACAATGGAGGAGAATTTGGGGGTTTGACACAGAGATTGGAACGATCTTTAATGATTTTGCATGGATTTGGATGTTTATGGTGATTTTGAATGGCTTTGCATGTTTAGGATGATTTTGAATGGCTTTGCATGGTTTTGGATGTTTAAGGTGATTTTGAATGGATTTGCATGTTTAGGATGGTTAGGTGGTTTTGGATGGTTTTGGATGTTTAGGGTGATTTTGCATGGATCTGAATGTGGCTTTGGATGGATTTGGGTGTTAAGGGTGATTTTGCATGGTATTGGACGTATTTGGATGTTTAGGGTGGTTAGAGTGGTTTGCTTGGATTTGGATGTTCACTACACATGAATCATTTAATTACACACCATTCATTACATGTACTAAAATAGTGCACAATTCGCTCAAATTTAAATAGCATACTACATACGAAAATAGCTCATCCTATCATGTGTTATGGTATCTGTCATACCCTGCCCCGAGCCACCCCTCCGTAGCTTGAGATGGGTTGTGAGGACAGCAGACACCGACCCTCTTATGATATCTACTGTCAAACCTTTACCTTTCCCAAACTAACATGTGCAACTTAGATAAGCAATAAAACTAACTCATATTACTATGCATAATTTATTAATACAATAGTTTGACAAGTTTGTTTATAGAAGACATGTTTCTAGTTTCTCGTTTAAATTGCCGTCTACAACTAAGTGCACATAATTCCTCGGCAGACCTTGACTTCGTACAACAACGGAAACTCGATTGCTACCTGAAAAGAAAAACATAAAAAAAGGATGAGATTCAATGAAACCCAGTGAGTGATCGAATAAACTAGGGTTCAACCAACCCTTTCAGTATTATAATAATAATCATACTCGTAATATAAATCATACGCAAGTAAATCTATAATTAAACCGAGCTTATACTCAAACATCCCCCGTAGGGTTATCCTCAGGATCATCTTTTCCTGCTAGCACCTCCGGCATAGCAACTCCTATATTTATCCTGCTGGCTCTCACGGCTCAGCAATCCTGACTGATTTTTTTCGCTGGCCAACCCGACTCAGCTAAATACATCGTTTTTGTATCCATATGTCCCCTATGTGCACATAGTCTTACCTTCGAGGCTCAGAAGCCAAGCCCATCCTCTTGGTACTTCTCATAGGCTCAAGAACTAGGCTCCGATGACCCGCTGACCATCCCACGAATGCCAAAAGCTCAAAAACTAGGTCCTTCCGACACTTTGACCATCCCGTGCGATATCGAATCCCGGTCCTAGTCACGACCATAATCATCAATGCCTTCTCCAAGTCCTTCAGCATTGGAAAATATATTCAGGTTGCCCGTGTGCCTTCTTTATGTCCTTCGGCATTGGGGACCACAATCTATCCATCGATGCCTTCATACAATCCTTCAGCATCGGAAATAGAACCTAATATCCAACAAGCTCGATATACTATATACTATCTGTTATCTCACCATAGCAGGCACATTAACAATACCACAACATCATGCTATCAAATATAAGCTCATTAGTGTGCTATTATTAATTATTCATAAGAAATATAATTAAGTTCTCTTGCGAAAGAAAATCAACCACTCACAGTAAAAGTTGTCAACCAACTTAGGGTTTCTTGCTCTGTTTTAGTTCCGGACCTTCTTAACTTTTCTCAAGCTTCTGGGACTGAAGAATACAACAACTAGGAACCTCAAAAACAGTTCTTTGGACGGCAAATCTTGCAAGGCTCCTTCTTTCTTCTTCCAAACTTTCTCTCTCTTTTCTCTTTTCTTTCTCTCTTTTCCTTCTCTCTTTTCTCTTTCAAGGTGACTCTCGGATGGGATGAAAATTCCTTCTCCCAAAGGGTCCTACTTATAGGATTTGGAAAGTAGCATCTCACCAATTCTTCTTCCAAACCTCCGACACTTCAATTCCATATGTCCAATTGCATGCTAAAAACTCCATGCATCAAAACAATTGTTGCCTTGCATGGTATCTTGATCATGCATCTCAATATCGCCTCCTTATGAAGTGTAAATTCCAAATTGAAGCCACTTAGCACCAAAAATTGGGTCAGAACAAAGAAAAATGAATTCTGCCACTTTTTCCATAAAGTTCTGCCAGTTCAATTTTCTGGTAAGTTTTAGGGGTCCGGTTTCTTGGCAAATTTCGACAGTTCGACCAAGTTTTTCAGTGTAGTTTCTCGGTAATTTCTGGCAGTTCAATTTCTTGGTAAGCTTCACACCCTTATTTCCCAGTAAATTTCGCCGGTTCAATCTCGGTAAATTCCACCAGTTCACTTTTGAAAGTTGCTTTCTGATAAGTTCCACTTCTTGGTAACTTTTGTTTCTCGGTAAGTTTGACTTCTTGGTAACTTCTATTGACTTTTTCTCTAAGTCTGACTTCCTGATAAGTTTCGTTGACTTTTCCCGTCAAGTTTGACTTTTTTCGAGAAAGTTTCTGGTGACTTTCAAACTGTTCAAGTGGCTTTTTCCAGCCTTCTATGCACCCAATCTACTTCCCAAAGTCCAATATTTAGTCAAAATTTGGCTAACTTCATAAACCCTAGGTTTTCTACCTTAAAATTTTTCCTAACTTCACAGGTTTGTTTTCCAAATTTACACCTTTTGCCCTAATTTCTTCTCTTTATGTCCTTTAAGCAACTAGATCGAATGTTGTCATAGCATCCATGTTTGAACCAATTACATTGTACTCAAGAAATTTGCATACAAATATATAATCACCACACATCTTGTTGAGGCACAGAAGCATCCAACATATACTCCACTGATCTAGAGCTAGTATTAGACTTAACCCCACCGGCAGCAAGTAGATTTGCAAAATCCATACATACCATTCTTATCTCATGTTCCAAATCTACATTAGAGTGAAAGAAAACCATTGAGTCATAAATGAAAAACTCTTTATGACTCAATGTTTCTTGTGTCTTTCCAGGGCGTCGTTAACCTCCAAGATTTCTTTTTCCTTCTACCCTAA

mRNA sequence

ATGTTTTACTTCACAACATTGAACCATGTTGAAGAGCTCTCCATCGACGGCGGAGATTTGGATATTTCAAATTGGTGTCGCCACTTTACGATATGTCACCTTGAAGATGGCATGTTACCCAATTACCCACTTCTCGAACGTTTGATTCTACGAGAATTTTCTCTCGATTATGAAATACCAATGCTTGATGATGATGAGACGAAGAAAGAAATCGTAGAAAATCAAACAAGTGTGTTTAATCTACTTCAAGAGGCAAATTCAATAACGCTTGATTCGATTTTTTTGGAGGGCGTCGTTAACCTCCAAGATTTCTTTTTCCTTCTACCCTAA

Coding sequence (CDS)

ATGTTTTACTTCACAACATTGAACCATGTTGAAGAGCTCTCCATCGACGGCGGAGATTTGGATATTTCAAATTGGTGTCGCCACTTTACGATATGTCACCTTGAAGATGGCATGTTACCCAATTACCCACTTCTCGAACGTTTGATTCTACGAGAATTTTCTCTCGATTATGAAATACCAATGCTTGATGATGATGAGACGAAGAAAGAAATCGTAGAAAATCAAACAAGTGTGTTTAATCTACTTCAAGAGGCAAATTCAATAACGCTTGATTCGATTTTTTTGGAGGGCGTCGTTAACCTCCAAGATTTCTTTTTCCTTCTACCCTAA

Protein sequence

MFYFTTLNHVEELSIDGGDLDISNWCRHFTICHLEDGMLPNYPLLERLILREFSLDYEIPMLDDDETKKEIVENQTSVFNLLQEANSITLDSIFLEGVVNLQDFFFLLP
Homology
[Close]
BLAST of ClCG08G000740 vs. NCBI nr
Match: XP_011656097.2 (F-box/LRR-repeat protein At3g26922 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 7.9e-17
Identity = 68/196 (34.69%), Postives = 81/196 (41.33%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSIDGGDLD SNWCRHFT C                            
Sbjct: 148 LFYFAALNNVEDLSIDGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 207

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP+YPLLERLILR                                 
Sbjct: 208 FYTDFFFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 267

[Close]
BLAST of ClCG08G000740 vs. NCBI nr
Match: KAE8649007.1 (hypothetical protein Csa_008094 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 7.9e-17
Identity = 68/196 (34.69%), Postives = 81/196 (41.33%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSIDGGDLD SNWCRHFT C                            
Sbjct: 148 LFYFAALNNVEDLSIDGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 207

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP+YPLLERLILR                                 
Sbjct: 208 FYTDFFFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 267

[Close]
BLAST of ClCG08G000740 vs. NCBI nr
Match: XP_008459622.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 68/196 (34.69%), Postives = 81/196 (41.33%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSI+GGDLD SNWCRHFT C                            
Sbjct: 134 LFYFAALNNVEDLSINGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 193

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP+YPLLERLILR                                 
Sbjct: 194 FYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 253

[Close]
BLAST of ClCG08G000740 vs. NCBI nr
Match: XP_016902420.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 68/196 (34.69%), Postives = 81/196 (41.33%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSI+GGDLD SNWCRHFT C                            
Sbjct: 134 LFYFAALNNVEDLSINGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 193

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP+YPLLERLILR                                 
Sbjct: 194 FYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 253

[Close]
BLAST of ClCG08G000740 vs. NCBI nr
Match: KAA0039262.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00448.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 68/196 (34.69%), Postives = 80/196 (40.82%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSI+GGDLD SNWCRHFT C                            
Sbjct: 126 LFYFAALNNVEDLSINGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 185

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP YPLLERLILR                                 
Sbjct: 186 FYIDFYFDEFEDGMLPAYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 245

[Close]
BLAST of ClCG08G000740 vs. ExPASy TrEMBL
Match: A0A0A0KSU4 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650450 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-17
Identity = 68/196 (34.69%), Postives = 81/196 (41.33%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSIDGGDLD SNWCRHFT C                            
Sbjct: 148 LFYFAALNNVEDLSIDGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 207

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP+YPLLERLILR                                 
Sbjct: 208 FYTDFFFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 267

[Close]
BLAST of ClCG08G000740 vs. ExPASy TrEMBL
Match: A0A1S3CAL9 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498692 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 68/196 (34.69%), Postives = 81/196 (41.33%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSI+GGDLD SNWCRHFT C                            
Sbjct: 134 LFYFAALNNVEDLSINGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 193

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP+YPLLERLILR                                 
Sbjct: 194 FYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 253

[Close]
BLAST of ClCG08G000740 vs. ExPASy TrEMBL
Match: A0A1S4E367 (F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498692 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 68/196 (34.69%), Postives = 81/196 (41.33%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSI+GGDLD SNWCRHFT C                            
Sbjct: 134 LFYFAALNNVEDLSINGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 193

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP+YPLLERLILR                                 
Sbjct: 194 FYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 253

[Close]
BLAST of ClCG08G000740 vs. ExPASy TrEMBL
Match: A0A5D3BMW8 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00520 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 68/196 (34.69%), Postives = 80/196 (40.82%), Query Frame = 0 

Query: 1   MFYFTTLNHVEELSIDGGDLDISNWCRHFTIC---------------------------- 60
           +FYF  LN+VE+LSI+GGDLD SNWCRHFT C                            
Sbjct: 126 LFYFAALNNVEDLSINGGDLDFSNWCRHFTTCRSLKLSGYYEGIWVPHSFEFLKSLEIEN 185

Query: 61  --------HLEDGMLPNYPLLERLILR--------------------------------- 97
                     EDGMLP YPLLERLILR                                 
Sbjct: 186 FYIDFYFDEFEDGMLPAYPLLERLILRGSCFEHLDICAPKLEYLELGILSCREYRCGIEI 245

The following BLAST results are available for this feature:
BLAST of ClCG08G000740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656097.27.9e-1734.69F-box/LRR-repeat protein At3g26922 [Cucumis sativus][more]
KAE8649007.17.9e-1734.69hypothetical protein Csa_008094 [Cucumis sativus][more]
XP_008459622.11.0e-1634.69PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo][more]
XP_016902420.11.0e-1634.69PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo][more]
KAA0039262.12.3e-1634.69F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00448.1 F-box/LRR-repeat... [more]
BLAST of ClCG08G000740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG08G000740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSU43.8e-1734.69F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650450 PE=4 ... [more]
A0A1S3CAL95.0e-1734.69F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A1S4E3675.0e-1734.69F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A5D3BMW81.1e-1634.69F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of ClCG08G000740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G000740.1ClCG08G000740.1mRNA