ClCG08G000400 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG08G000400
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	regulator of nonsense transcripts UPF3-like
Location	CG_Chr08: 1160703 .. 1167398 (-)
RNA-Seq Expression	ClCG08G000400
Synteny	ClCG08G000400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAACTTCCCAAAAATATATTCTCCTTGACTTGTTTGAGAAATTAGAAAAACCAAAAGCTTGAAGGGAATTCTCAATTGTTTTGGTTTGTGTTCGCAGTGCGGGGGTTTTCCAGATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGGTTCCACCCTTTTTTCTCTTTTTCTTCTCTATTCACCACAAATTACTCTTCCCAACTGGGTTTTCAGTTTTGTCTTGTTATTATCTCGTTTTGTATTTTCAGAAATCTGGATGTTCAATAAGGCTTTTTGCGAACTGGGTATTTCTCGTATTGTGCGTTTGTGTGCTTTTATGCTCTTTCTTTTCCCCTACGTGGGTTATTGGGGGGTTGGTGTGATTGGAATGAATGCTGTAGGACACCCCTCCAATTTCATGCCCAATTGTTGTGTATGATTGTCATCTCCGGAAACTAAATCAAGCAATCCTTCTAGACTTTGTGTTTTTCTGCTTACAATCGCCTCAGTTGTATGCTTCCTGTTTTTTCTTTTCTCTTGGTTTCTATGGACTACAGTTCACAATATGAATACTGAAGGTTTCTTACTCATTCAGAGGTTTCTTCTGAAATAATTTTGCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTCGATGGCCATGTTTTCGTTAATGAGAAGGGTAAAGCCGAAAGCTTTTTCCTTTTTCCTTTTATTGAACTTATCAGTAGCTTCTTGTTTCGCTGGGTTTGGTGGGTGGTTCACTTGCTCTCAACCCGTTTCTGAGAAGTGGGAGATAACGATTTTATGAATGAGACCAATGCTTAATACAGATTACTCCCCTTCATGTTTTCTGATGTGCATTTTTCAATTAACTACATATCATCTTCGAGATTGTGAAAATGTTTAATGTTAGGATCATGTTTCGTTCCACATGTTTAGAGTCTCGATTGAAGTTAACTTATTCTAGTCAAATGATTATAGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGGTAATGATCAGTTTGTGAGAAGATGGAATAAGTGGTTGTTCTTGTTTTGTATTCCTTATTGTGTTGTGTAATTATCTTTCCTCAATGAAAGCAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTTTGTTACTATGTTCACTGACTGGCTTCTTGACATTACTTGCATTCGTGAAGTCATTGGAAGAACGCCAAATATGTTTATGACTTAAAATTGAGTGCCAAAAAGTTGCTGAATAGTCATTCTATAAATTTGCTATTAACTGCCATAGAGATACCATTTACTCCAAATTTGGATAATTCTATAAGTTTTATGTCTCTACTTTTGTTTGCAGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGTGAGATTGTTGTATTCTCTTAATACATGTAACTATGTGCTAATATTTTAAAAATTCTGAGAAAGTGAAGCTACTTGTTTACTAAAATGAGGTTGGAACCAGTTGATTTTTCATTATTTTGACTACTTCACAAGGTATTGGTTCTGTCCATTTAGAGATTAATATTAATGCATTTACTTTAACATTAAGGTGACATTCCTTCGTTTGAATTTATCTGCTGCTTGTGTAATGTTTCAGTATCTTTTCCTTCCATATCGGTTAATTCCATGCATTATATGAATCCAGCTCGTAGGATGGTTTTCTATGTGGTCTTGAAGATTTTTATTCCTCTTCTAATTTCGTACATACTAAATTTCTTGTTATCTCATGCTAAGTTTTTTGGTTCAATAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTTACTTTCAATGTCTTTTTTCTCACGTTTAGAAAATCCAAAGTCTTAGTTTGTTACTTGCTAGTGTCTTTACTATTTTCCCCCTATTGTTTTTGGGACAATAAGCTTTATTGGCTCGTCTTAGATTAGGTCTAAGGATGGTGAACGTGAAGCAGAATGTTTTTAACTTACAAAATGAAGAAAAATGCCTTAAGGATAATTACAAAAGTCCTTAATTACACATGCCTAAAGCGAGGCATTAAACTAGCCAAGGACCCAATCTCCTCCCATGACCTCCCAAAACCCTTAGGAGCCGTTTGGCCCACCAACTTTTTAAGTTAGTGTTAAACAACAATAGTAAAACACTATTGAAGTTTGCACATTTATTGAGAAACTCAATCTTACAACTCTATACCTCAAATACAAGCTTCCTAATTCCAGACTTGTTAACTCCACTCCGTTGGCCAAACACACCCTTCAAGATTTTCCCATTACTCTAGTCAAATATTCCATAAAAAAATCTAGTGAAATATTTTATAATGTTGATCATAGAAGACCACAATCTCTATTACAAACTAAACAAACTCTAAAGGCCTCAACAAAAGTTGGAAATCAAGGTATCCAACTGTCATCTCTTGAGGATGCGATCGAAATCCTCACATGCTCCCCTGATATGAATGCATCAGTACAGCCCGGGCACAAAGGAAGATTGCCTCTTGTATATAATCAGTAGTGTTAACTCCTAATGCAACTATGCAAGTACTTCCTCCTAGTCCTGCCACTCTAAAAACTTGACATTCTTGGAAGTTTTTTCCTTCATTGTGAGGTGAAGTTGAAAGTAATGAAGGCGAGTGATGACTCTGAAGAAACCTTCCTAAAGTTTCCAACTTCTTAGTGGGGATAGTATGTGTTCGTCTAAGTTTTTATTGACTGTGGTATAAACTGTATCATATGAGACCGCCTCAAGATCATGAACCGTGGATGTTGGAATTGAGGCTTTAGTTTTTTGCCCCCTAGATTTCATATGTACTTCTTGGCTATCCTTTCTTGTGAACAATTTGTGTCTTCTATATTTTTTGTCTGAAGATTTTGTGTTGTACATTCAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTGGGTACAGGTATGTCTATTTATCTGTCTATGTGGTCAGCAACATCATTTAAATTGTCATTTTGTTTTGTTCTAAGTTTTGATCTGGTATTTTATTGTTAGACTGTTGAGAATGAGTCTGATTTAAACTCTCTTAGCAATTCAGTGTTACTAGTCATTGAGGAGCAGGGGAACCTTAGCCGATTTGACTTGAGATCTGAACACTTTATGCCCTACTCCGCTGCCTACTTGCAATTTTTAAATAATTTTTTCCAATGCATGCTTTTCATGATGGGACTTAATTTTTTTCCTTTTTCTTTTTGGAAGAGTTCGCTTAAGTCTTATGTTTCTCCCATTTCAAATTATCCTGAGCCCTGTATTAACGTTTTTGAAAATTTCATTTTTCTCTTTATTAATAATTATCTTCTTGATTCTTTCTGGGAGTTTGCCATATTATGATGTGCAGATTGCAGGATTGTAATATTTGGACCTGCATTTTAACATAGGCATTATTAACTTACCTTAAACACTTGGGAAGTGATATATTTGAGAGATGGGAGGGGGCACCTTTGCTCTGTTTTATCAAAATATGTTTATCAGGAAAAGGAAAAATGAAAAAAAAGAAAAAAGAAAAAAGAACAAGGTCGTCCAGTAGATAGTGCATGTTGCCTGAATTTCTGAATTATGTTCTTTCGCTGCACTGGGCTTGCTACACCCTTATTTCTTTTAATTTATCAATATGTTCTACATGTTTATAATGAACTTGCAGTCTAGAATTTGAAGGCTCTGTTTCATATGTATCTGTAACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTTATGTAAGTTTCTTTTGTTCTCTCGACTAACTATGCAATTACAACTTTCGTTACCCTCTTTCTTTAGAATTATTAACTTCTGTGAATGATCTCCACTCCCACTCATGGCTAATTCTGGGAGGGCACAATTTCCAATCTGTTGCATCGAATTTTAGCACTTGTAAATTTCATGGATAATGATACCTTTACAGGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAACGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAATGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAGTCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGGTACTACTATTATAATCCTTGCTTATATTTTAGGGACTACTAGCTTATTTGTACAATCTTATTATTGAAGTATCGGACCCTGATCATTGTGTTAAATCATCCTGCTTGATGGATGAGCTGAATAATTTATACTGCTACATTATGTTTCACAAATGAAATTTACCCTATGTATCTTTATGCACTTACAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTACTTTCTCACAAACTTTTCTTGCGTTGTCCACCTATTTTAGGAAATTTTACAAGTACTTTCTACTCTTAGTTAATCTAAAACGTGTTGTGTTCTTTTTAGGTTCTGTAAGGCATGCTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGGTTCGTTTATGCATCCAAACTAGTGACTGTCTCTCTCGTGTTACATGATTGCTTTTTTTTTTTTTTCTCAAAAACTCATTTTCTTTGATGCCTGTGCAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAGCATATTTAAATCATGTGAGTCCTTTTACAAATTATCAATGTTTTACCTCCTTTAAGATAGAAGAGCAATACTATCTTTTAAGAGGGTTTCGTCTCTTTCAACTGAATGACTAAGGAGGTCAAAATTATCTAACGATTCTTGTTGGAAGTAAATATAGCACATGTTAAAATCCGTTGTGCTAACATTTGTCAATATATAATTTGGCATGCAACTCATGATAGTTTCGTTCCTCTTAGCACTCTTGGCATTCTTAGCAGTTGATAATTTGGCATGTAAATCAGCTTGTTTGTTGTTTATGGGAATGCCCTCGTGTATGTTTTAGTTGCTATGAAGTTGGCTATTTTATTATTTTTATTTAGAAAATAGGAAACAAAATATTTGATGGATGTGAATTTGTGACGGAATATTTATGAGAAAGAGGGAAACCCCAAGTTAATGAAAATTACATTAAGACATAACCAAAAGATATCATATACCAATTAAATGATGTGTGCATTTACATTAAGACATAACATGGACAGACACAGACAAGGTTAAAAGATTTATCAGAAGGGGCGAGCTTATTATTGTATGTCTGGCTATGAAGGTTATTACTTATCATTACTATCATATTATTTGGCTGAAAGATGTACTGCTCTACTGCTATAACATTCAGGCCGCATAAGCTATCATTGGGACTGTCATCATAGGGGTTCCAAAATGTGAACTGTAATGGAGTTAATAAATGACAGCTTCAATGAAATTCCTGACTGCTGCCATGCATTCTCCTTGAATTCAGCATATATTTTCTGCTGTAGTCGTACTTTTACTGGTTATTGGCTGGATATTGTTATTTGTTTGTCTTAGGTCTTTTCATTTATTATATAGATAAGGACATGTATTGTTTTCCATTAGATCATGACGATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA

mRNA sequence

CCCAAACTTCCCAAAAATATATTCTCCTTGACTTGTTTGAGAAATTAGAAAAACCAAAAGCTTGAAGGGAATTCTCAATTGTTTTGGTTTGTGTTCGCAGTGCGGGGGTTTTCCAGATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTCGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTTACTTTCAATATTTTGTGTTGTACATTCAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTGGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTTATGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAACGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAATGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAGTCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTTCTGTAAGGCATGCTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTCTTTTCATTTATTATATAGATAAGGACATGTATTGTTTTCCATTAGATCATGACGATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA

Coding sequence (CDS)

ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTCGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTTACTTTCAATATTTTGTGTTGTACATTCAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTGGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTTATGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAACGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAATGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAGTCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTTCTGTAAGGCATGCTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTCTTTTCATTTATTATATAGATAAGGACATGTATTGTTTTCCATTAGATCATGACGATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA

Protein sequence

MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGLFIYYIDKDMYCFPLDHDDVYVIQQIMASRQDYGSSNFQGNYLHSEDLMHILRRHHVKWRYALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG

Homology

[Close]

BLAST of ClCG08G000400 vs. NCBI nr
Match: KAA0039239.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 955.3 bits (2468), Expect = 2.6e-274
Identity = 506/576 (87.85%), Postives = 519/576 (90.10%), Query Frame = 0


Query: 47  SQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 106
           +QKDQRYARAYIDFT+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 107 GREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 166
           GREGTIYK DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ
Sbjct: 108 GREGTIYKADPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 167

Query: 167 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSV 226
           KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKAC          YILKDSV
Sbjct: 168 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKAC------ATFNYILKDSV 227

Query: 227 KNTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGML 286
           KNTNRRDKSNFILVPRR+DQSA SSGIG+SDVGTADFGKKKILLLKGKERDIS+VSD ML
Sbjct: 228 KNTNRRDKSNFILVPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDML 287

Query: 287 QLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDN 346
           QLQSATSSGNSPASASKHN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDN
Sbjct: 288 QLQSATSSGNSPASASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDN 347

Query: 347 GKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRN 406
           GKRPPRP NARSGSND+SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSA+EKQ+KRIRN
Sbjct: 348 GKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRN 407

Query: 407 KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTT 466
           KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT 
Sbjct: 408 KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTI 467

Query: 467 MSGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           +SGRNSSVENGCSVRH GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE           
Sbjct: 468 VSGRNSSVENGCSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE----------- 527

Query: 527 LFIYYIDKDMYCFPLDHDDVYVIQQIMASRQDYGSSNFQGNYLHSEDLMHILRRHHVKWR 586
                                    I+ASRQDYGSSNFQG+YLHSEDLMHILRRHHVKWR
Sbjct: 528 -------------------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWR 581

Query: 587 YALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG 622
           YALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Sbjct: 588 YALEAVGNSNRFRELDCKTCNCFVVYRWLQNTRFSG 581

[Close]

BLAST of ClCG08G000400 vs. NCBI nr
Match: TYK00427.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 945.7 bits (2443), Expect = 2.1e-271
Identity = 503/575 (87.48%), Postives = 516/575 (89.74%), Query Frame = 0


Query: 47  SQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 106
           +QKDQRYARAYIDFT+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 107 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 166
           GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK
Sbjct: 108 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 167

Query: 167 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVK 226
           RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK            YILKDSVK
Sbjct: 168 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVK 227

Query: 227 NTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQ 286
           NTNRRDKSNFILVPRR+DQSA SSGIG+SDVGTADFGKKKILLLKGKERDIS+VSD MLQ
Sbjct: 228 NTNRRDKSNFILVPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQ 287

Query: 287 LQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNG 346
           LQSATSSGNSPASASKHN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNG
Sbjct: 288 LQSATSSGNSPASASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNG 347

Query: 347 KRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNK 406
           KRPPRP NARSGSND+SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSA+EKQ+KRIRNK
Sbjct: 348 KRPPRPTNARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRNK 407

Query: 407 DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTM 466
           DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +
Sbjct: 408 DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIV 467

Query: 467 SGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGL 526
           SGRNSSVENG SVRH GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE            
Sbjct: 468 SGRNSSVENG-SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE------------ 527

Query: 527 FIYYIDKDMYCFPLDHDDVYVIQQIMASRQDYGSSNFQGNYLHSEDLMHILRRHHVKWRY 586
                                   I+ASRQDYGSSNFQG+YLHSEDLMHILRRHHVKWRY
Sbjct: 528 ------------------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRY 573

Query: 587 ALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG 622
           ALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Sbjct: 588 ALEAVGNSNRFRELDCKTCNCFVVYRWLQNTRFSG 573

[Close]

BLAST of ClCG08G000400 vs. NCBI nr
Match: XP_008459659.1 (PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo])

HSP 1 Score: 937.2 bits (2421), Expect = 7.4e-269
Identity = 493/525 (93.90%), Postives = 502/525 (95.62%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVP 240
           KVKRGGAASSRKPESNSMKRGMEKKK            YILKDSVKNTNRRDKSNFILVP
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASA 300
           RR+DQSA SSGIG+SDVG ADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASA
Sbjct: 241 RRDDQSANSSGIGISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASA 300

Query: 301 SKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSN 360
           SKHN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSN
Sbjct: 301 SKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSN 360

Query: 361 DMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRS 420
           D+SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSA+EKQEKRIRNKDRPDRGVWAPRSRS
Sbjct: 361 DISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRS 420

Query: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVR 480
           DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +SGRNSSVENG SVR
Sbjct: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENG-SVR 480

Query: 481 HAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           H GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 HVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of ClCG08G000400 vs. NCBI nr
Match: XP_038890175.1 (regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida] >XP_038890176.1 regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida])

HSP 1 Score: 936.0 bits (2418), Expect = 1.6e-268
Identity = 492/525 (93.71%), Postives = 499/525 (95.05%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRF GRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFGGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
           T+PEDVFEFAEFFDGH+FVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHIFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKE PIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKEAPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVP 240
           KVKRGGAASSRKPE NSMKRGMEKKK            YILKDSVKNTNRRDKSNFILVP
Sbjct: 181 KVKRGGAASSRKPELNSMKRGMEKKK------------YILKDSVKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASA 300
           RREDQSATSSGIG+SDV TADFGKKKILLLKGKERDIS+VSDGMLQLQSATSS  SPASA
Sbjct: 241 RREDQSATSSGIGISDVVTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSETSPASA 300

Query: 301 SKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSN 360
           SKHNQRREA GSMIRSILLNNEARHGQ+SSVAQSH KIQILNSDNGKRPPRPINARSGSN
Sbjct: 301 SKHNQRREASGSMIRSILLNNEARHGQNSSVAQSHPKIQILNSDNGKRPPRPINARSGSN 360

Query: 361 DMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRS 420
           DMSSNEPNPSGSEGDGKRAPD KFSKKELHGLGS NEKQEKRIRNKDRPDRGVWAPRSRS
Sbjct: 361 DMSSNEPNPSGSEGDGKRAPDGKFSKKELHGLGSGNEKQEKRIRNKDRPDRGVWAPRSRS 420

Query: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVR 480
           DASVSQLEESSVSQSSHLLSDSVEAYRGEMKED+HGSR GDVTTT+SGRNSSVENG SVR
Sbjct: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDVHGSRTGDVTTTVSGRNSSVENG-SVR 480

Query: 481 HAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           H GRRGA HVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 HVGRRGAAHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of ClCG08G000400 vs. NCBI nr
Match: XP_011656113.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus])

HSP 1 Score: 934.1 bits (2413), Expect = 6.2e-268
Identity = 492/525 (93.71%), Postives = 501/525 (95.43%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVP 240
           KVKRGGAASSRKPESNSMKRGMEKKK            YILKDSVKNTNRRDKSNFILVP
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASA 300
           RREDQSATSS IG+SDVGTADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASA
Sbjct: 241 RREDQSATSSAIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASA 300

Query: 301 SKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSN 360
           SKHN RREAGG +IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSN
Sbjct: 301 SKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSN 360

Query: 361 DMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRS 420
           D+SSNEPNPSGSEGDGKRA D+KFSKKELHGLGSA+EKQEKRIRNKDRPDRGVWAPRSRS
Sbjct: 361 DISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRS 420

Query: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVR 480
           DASVSQLEESSV QSSHLLSDSVEA+RGEMKEDIHGSR GDVTT +SGRNSSVENG SVR
Sbjct: 421 DASVSQLEESSVPQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENG-SVR 480

Query: 481 HAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           H GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 HVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of ClCG08G000400 vs. ExPASy Swiss-Prot
Match: Q9FVW4 (Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 PE=1 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 4.9e-106
Identity = 248/543 (45.67%), Postives = 329/543 (60.59%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVP 180
           FLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 181 RKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILV 240
           R  +R    S+ KP     KR  EKKK            Y+ K+S KN  R+  ++ +  
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKK------------YVEKESSKNVPRKTTAD-VSS 240

Query: 241 PRREDQSATSSG-----------IGVSDVG---TADFGKKKILLLKGKERDISYVSDGML 300
            + + + + SSG           I  S  G   T D GKKKILLL+ K+RD         
Sbjct: 241 SKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQP 300

Query: 301 QLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDN 360
           +    T+   + ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N
Sbjct: 301 EQHIDTNLSRN-STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAEN 360

Query: 361 GKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRN 420
            KRP RP N R+G                            K+ H  G+ +EKQE+R RN
Sbjct: 361 YKRPSRPANTRAG----------------------------KDYHTSGTISEKQERRTRN 420

Query: 421 KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTT 480
           KDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V  +
Sbjct: 421 KDRPDRVMWAP--RRDGS----EDQPLSSAGN---------NGEVKDRMFSQRSGEVVNS 480

Query: 481 MSGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQVWVQKS 526
             G   ++ENG S RH+ RR  G   K++  +   EGK S+RG  GG   HEKQ+W+QK 
Sbjct: 481 SGGH--TLENG-SARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQMWIQKP 481

[Close]

BLAST of ClCG08G000400 vs. ExPASy Swiss-Prot
Match: B0S733 (Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-19
Identity = 71/208 (34.13%), Postives = 109/208 (52.40%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTKPEDVF 67
           +KVVIR LPPSL    L  H+       F++  + P   S     ++RAYI+F  PED+ 
Sbjct: 43  SKVVIRRLPPSLSKDQLQEHLSP--LPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDII 102

Query: 68  EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKDGREGTIYKDPDYLEFL---- 127
            F + FDG+VF++ KG +Y AVVE+AP Q+V +    KKD + GTI +DP+Y  FL    
Sbjct: 103 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 162

Query: 128 ----KLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSV 187
               K +A P   L   EI+ + +E      AK T   TPL+E+++ K+  +   +    
Sbjct: 163 CDEEKSMANPETLL--GEIEAKTREL----IAKRT---TPLLEYIKNKKLEKQRIREEKR 222

Query: 188 PRKVKRGGAASSRKPESNSMKRGMEKKK 207
             + +R      ++ E    +R  E++K
Sbjct: 223 EERRRRELEKKRQREEEKRKRREEERQK 239

[Close]

BLAST of ClCG08G000400 vs. ExPASy Swiss-Prot
Match: Q9BZI7 (Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-16
Identity = 116/442 (26.24%), Postives = 188/442 (42.53%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTK 67
           +KVVIR LPP+L    L  H+     HD F        +    TS     YARAYI+F  
Sbjct: 51  SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-------FFSNDTSLYPHMYARAYINFKN 110

Query: 68  PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKK-DGREGTIYKDPDYLEF 127
            ED+  F + FDG+VF++ KG +Y A+VE+AP Q+  +  TKK D + GTI  DP+Y +F
Sbjct: 111 QEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKF 170

Query: 128 LKLIAKPAEHLPSA-EIQLERKEAE-QSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVP 187
           L+  A   E + S  E  LE  EA+ +   AK+T   TPL+ F++ K+ +    +     
Sbjct: 171 LESYATDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKREERRR 230

Query: 188 RKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILV 247
           R+++R      ++ E     +  EK+K    +      +   +D +K+  +     F+L 
Sbjct: 231 REIER----KRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKLKDEPKIKVHRFLLQ 290

Query: 248 PRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPAS 307
              +         G       +  K++    K K+ D   +SD     QS T    S + 
Sbjct: 291 AVNQKNLLKKPEKG----DEKELDKRE----KAKKLDKENLSDERASGQSCTLPKRSDSE 350

Query: 308 ASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGS 367
                 +R    S  R               + +  ++++    +  ++  R    ++  
Sbjct: 351 LKDEKPKRPEDESG-RDYREREREYERDQERILRERERLKRQEEERRRQKERYEKEKT-- 410

Query: 368 NDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEK-----RIRNKDRPDRGVW 427
                 +      E D  R    K    E  G     EK+E+     RIRNKDRP   ++
Sbjct: 411 ---FKRKEEEMKKEKDTLRDKGKKAESTESIGSSEKTEKKEEVVKRDRIRNKDRPAMQLY 464

Query: 428 APRSRSDASVSQLEESSVSQSS 437
            P +RS   +   ++S+ S  S
Sbjct: 471 QPGARSRNRLCPPDDSTKSGDS 464

[Close]

BLAST of ClCG08G000400 vs. ExPASy Swiss-Prot
Match: Q9H1J1 (Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-14
Identity = 61/205 (29.76%), Postives = 97/205 (47.32%), Query Frame = 0


Query: 8   TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTK 67
           +KVVIR LPP L    L   +     HD F        +     S     Y+RAYI+F  
Sbjct: 68  SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFE-------FFAADLSLYPHLYSRAYINFRN 127

Query: 68  PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKDGREGTIYKDPDYLEF 127
           P+D+  F + FDG++F++ KG +Y AVVE+AP Q++ +    KKD + G+I  DP+Y +F
Sbjct: 128 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 187

Query: 128 LKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRK 187
           L+      E   SA  +    E E           TPL+E+++ ++  +   +      +
Sbjct: 188 LETYC-VEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREER 247

Query: 188 VKRGGAASSRKPESNSMKRGMEKKK 207
            +R       + E    +R  E+ K
Sbjct: 248 RRRELEKKRLREEEKRRRREEERCK 264

[Close]

BLAST of ClCG08G000400 vs. ExPASy Swiss-Prot
Match: Q10267 (Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=upf3 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-12
Identity = 53/203 (26.11%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 9   KVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTS--QKDQRYARAYIDFTKPEDV 68
           KV++ +LPP+LP       I+  F     W  +  GK +   + +  + AY+ F     V
Sbjct: 13  KVLVFNLPPTLPEQVFLQSINS-FLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAV 72

Query: 69  FEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIA 128
            EF   + GH F+++K   Y+A+V  AP Q++P S  K D  EG++ +DP + EF     
Sbjct: 73  QEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF----- 132

Query: 129 KPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR--AVESGTQGSSVPRKVKR 188
                    + +   + A      ++    TPL++++ +K+   VE G    S      +
Sbjct: 133 -------KVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKNAVVEKGKSKPSKKSVKAK 192

Query: 189 GGAASSRKPESNSMKRGMEKKKA 208
                + KP SN+ K G   +++
Sbjct: 193 KKLRLAEKPASNNSKAGKSSQES 202

[Close]

BLAST of ClCG08G000400 vs. ExPASy TrEMBL
Match: A0A5A7TD91 (Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00280 PE=3 SV=1)

HSP 1 Score: 955.3 bits (2468), Expect = 1.3e-274
Identity = 506/576 (87.85%), Postives = 519/576 (90.10%), Query Frame = 0


Query: 47  SQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 106
           +QKDQRYARAYIDFT+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 107 GREGTIYK-DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 166
           GREGTIYK DPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ
Sbjct: 108 GREGTIYKADPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQ 167

Query: 167 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSV 226
           KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKAC          YILKDSV
Sbjct: 168 KRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKAC------ATFNYILKDSV 227

Query: 227 KNTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGML 286
           KNTNRRDKSNFILVPRR+DQSA SSGIG+SDVGTADFGKKKILLLKGKERDIS+VSD ML
Sbjct: 228 KNTNRRDKSNFILVPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDML 287

Query: 287 QLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDN 346
           QLQSATSSGNSPASASKHN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDN
Sbjct: 288 QLQSATSSGNSPASASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDN 347

Query: 347 GKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRN 406
           GKRPPRP NARSGSND+SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSA+EKQ+KRIRN
Sbjct: 348 GKRPPRPTNARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRN 407

Query: 407 KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTT 466
           KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT 
Sbjct: 408 KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTI 467

Query: 467 MSGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           +SGRNSSVENGCSVRH GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE           
Sbjct: 468 VSGRNSSVENGCSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE----------- 527

Query: 527 LFIYYIDKDMYCFPLDHDDVYVIQQIMASRQDYGSSNFQGNYLHSEDLMHILRRHHVKWR 586
                                    I+ASRQDYGSSNFQG+YLHSEDLMHILRRHHVKWR
Sbjct: 528 -------------------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWR 581

Query: 587 YALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG 622
           YALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Sbjct: 588 YALEAVGNSNRFRELDCKTCNCFVVYRWLQNTRFSG 581

[Close]

BLAST of ClCG08G000400 vs. ExPASy TrEMBL
Match: A0A5D3BML0 (Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00280 PE=3 SV=1)

HSP 1 Score: 945.7 bits (2443), Expect = 1.0e-271
Identity = 503/575 (87.48%), Postives = 516/575 (89.74%), Query Frame = 0


Query: 47  SQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 106
           +QKDQRYARAYIDFT+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD
Sbjct: 48  TQKDQRYARAYIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKD 107

Query: 107 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 166
           GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK
Sbjct: 108 GREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQK 167

Query: 167 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVK 226
           RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK            YILKDSVK
Sbjct: 168 RAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVK 227

Query: 227 NTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQ 286
           NTNRRDKSNFILVPRR+DQSA SSGIG+SDVGTADFGKKKILLLKGKERDIS+VSD MLQ
Sbjct: 228 NTNRRDKSNFILVPRRDDQSANSSGIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQ 287

Query: 287 LQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNG 346
           LQSATSSGNSPASASKHN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNG
Sbjct: 288 LQSATSSGNSPASASKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNG 347

Query: 347 KRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNK 406
           KRPPRP NARSGSND+SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSA+EKQ+KRIRNK
Sbjct: 348 KRPPRPTNARSGSNDISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQDKRIRNK 407

Query: 407 DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTM 466
           DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +
Sbjct: 408 DRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIV 467

Query: 467 SGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSGL 526
           SGRNSSVENG SVRH GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE            
Sbjct: 468 SGRNSSVENG-SVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHE------------ 527

Query: 527 FIYYIDKDMYCFPLDHDDVYVIQQIMASRQDYGSSNFQGNYLHSEDLMHILRRHHVKWRY 586
                                   I+ASRQDYGSSNFQG+YLHSEDLMHILRRHHVKWRY
Sbjct: 528 ------------------------IVASRQDYGSSNFQGDYLHSEDLMHILRRHHVKWRY 573

Query: 587 ALEAVGNSNRFHELDCKICNCFVVYRWLQNTRFSG 622
           ALEAVGNSNRF ELDCK CNCFVVYRWLQNTRFSG
Sbjct: 588 ALEAVGNSNRFRELDCKTCNCFVVYRWLQNTRFSG 573

[Close]

BLAST of ClCG08G000400 vs. ExPASy TrEMBL
Match: A0A1S3CB69 (regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 937.2 bits (2421), Expect = 3.6e-269
Identity = 493/525 (93.90%), Postives = 502/525 (95.62%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVP 240
           KVKRGGAASSRKPESNSMKRGMEKKK            YILKDSVKNTNRRDKSNFILVP
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASA 300
           RR+DQSA SSGIG+SDVG ADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASA
Sbjct: 241 RRDDQSANSSGIGISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASA 300

Query: 301 SKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSN 360
           SKHN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSN
Sbjct: 301 SKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSN 360

Query: 361 DMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRS 420
           D+SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSA+EKQEKRIRNKDRPDRGVWAPRSRS
Sbjct: 361 DISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRS 420

Query: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVR 480
           DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +SGRNSSVENG SVR
Sbjct: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENG-SVR 480

Query: 481 HAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           H GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 HVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of ClCG08G000400 vs. ExPASy TrEMBL
Match: A0A0A0KSY5 (Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 PE=3 SV=1)

HSP 1 Score: 934.1 bits (2413), Expect = 3.0e-268
Identity = 492/525 (93.71%), Postives = 501/525 (95.43%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVP 240
           KVKRGGAASSRKPESNSMKRGMEKKK            YILKDSVKNTNRRDKSNFILVP
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASA 300
           RREDQSATSS IG+SDVGTADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASA
Sbjct: 241 RREDQSATSSAIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASA 300

Query: 301 SKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSN 360
           SKHN RREAGG +IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSN
Sbjct: 301 SKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSN 360

Query: 361 DMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRS 420
           D+SSNEPNPSGSEGDGKRA D+KFSKKELHGLGSA+EKQEKRIRNKDRPDRGVWAPRSRS
Sbjct: 361 DISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRS 420

Query: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVR 480
           DASVSQLEESSV QSSHLLSDSVEA+RGEMKEDIHGSR GDVTT +SGRNSSVENG SVR
Sbjct: 421 DASVSQLEESSVPQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENG-SVR 480

Query: 481 HAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           H GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 HVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 512

[Close]

BLAST of ClCG08G000400 vs. ExPASy TrEMBL
Match: A0A1S3CBX5 (regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 919.8 bits (2376), Expect = 5.9e-264
Identity = 487/525 (92.76%), Postives = 496/525 (94.48%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 181 KVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILVP 240
           KVKRGGAASSRKPESNSMKRGMEKKK            YILKDSVKNTNRRDKSNFILVP
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK------------YILKDSVKNTNRRDKSNFILVP 240

Query: 241 RREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASA 300
           RR+DQSA SSGIG+SDVG ADFGKKKILLLKGKERDIS+       LQSATSSGNSPASA
Sbjct: 241 RRDDQSANSSGIGISDVGAADFGKKKILLLKGKERDISH-------LQSATSSGNSPASA 300

Query: 301 SKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSN 360
           SKHN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSN
Sbjct: 301 SKHNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSN 360

Query: 361 DMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRNKDRPDRGVWAPRSRS 420
           D+SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSA+EKQEKRIRNKDRPDRGVWAPRSRS
Sbjct: 361 DISSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRS 420

Query: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGCSVR 480
           DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +SGRNSSVENG SVR
Sbjct: 421 DASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENG-SVR 480

Query: 481 HAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 526
           H GRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG
Sbjct: 481 HVGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSG 505

[Close]

BLAST of ClCG08G000400 vs. TAIR 10
Match: AT1G33980.1 (Smg-4/UPF3 family protein )

HSP 1 Score: 386.7 bits (992), Expect = 3.4e-107
Identity = 248/543 (45.67%), Postives = 329/543 (60.59%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 61  TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVP 180
           FLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 181 RKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFILV 240
           R  +R    S+ KP     KR  EKKK            Y+ K+S KN  R+  ++ +  
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKK------------YVEKESSKNVPRKTTAD-VSS 240

Query: 241 PRREDQSATSSG-----------IGVSDVG---TADFGKKKILLLKGKERDISYVSDGML 300
            + + + + SSG           I  S  G   T D GKKKILLL+ K+RD         
Sbjct: 241 SKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQP 300

Query: 301 QLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDN 360
           +    T+   + ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N
Sbjct: 301 EQHIDTNLSRN-STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAEN 360

Query: 361 GKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRIRN 420
            KRP RP N R+G                            K+ H  G+ +EKQE+R RN
Sbjct: 361 YKRPSRPANTRAG----------------------------KDYHTSGTISEKQERRTRN 420

Query: 421 KDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTT 480
           KDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V  +
Sbjct: 421 KDRPDRVMWAP--RRDGS----EDQPLSSAGN---------NGEVKDRMFSQRSGEVVNS 480

Query: 481 MSGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQVWVQKS 526
             G   ++ENG S RH+ RR  G   K++  +   EGK S+RG  GG   HEKQ+W+QK 
Sbjct: 481 SGGH--TLENG-SARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQMWIQKP 481

[Close]

BLAST of ClCG08G000400 vs. TAIR 10
Match: AT1G33980.2 (Smg-4/UPF3 family protein )

HSP 1 Score: 380.2 bits (975), Expect = 3.2e-105
Identity = 247/545 (45.32%), Postives = 328/545 (60.18%), Query Frame = 0


Query: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKT--SQKDQRYARAYI 60
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+    K+Q+Y+RAY+
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60

Query: 61  DFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDY 120
            F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDY
Sbjct: 61  SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120

Query: 121 LEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SS 180
           LEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S 
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180

Query: 181 VPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQYFVLYIQYILKDSVKNTNRRDKSNFI 240
           + R  +R    S+ KP     KR  EKKK            Y+ K+S KN  R+  ++ +
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKK------------YVEKESSKNVPRKTTAD-V 240

Query: 241 LVPRREDQSATSSG-----------IGVSDVG---TADFGKKKILLLKGKERDISYVSDG 300
              + + + + SSG           I  S  G   T D GKKKILLL+ K+RD       
Sbjct: 241 SSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPP 300

Query: 301 MLQLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNS 360
             +    T+   + ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   +
Sbjct: 301 QPEQHIDTNLSRN-STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEA 360

Query: 361 DNGKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSANEKQEKRI 420
           +N KRP RP N R+G                            K+ H  G+ +EKQE+R 
Sbjct: 361 ENYKRPSRPANTRAG----------------------------KDYHTSGTISEKQERRT 420

Query: 421 RNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVT 480
           RNKDRPDR +WAP  R D S    E+  +S + +          GE+K+ +   R+G+V 
Sbjct: 421 RNKDRPDRVMWAP--RRDGS----EDQPLSSAGN---------NGEVKDRMFSQRSGEVV 480

Query: 481 TTMSGRNSSVENGCSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQVWVQ 526
            +  G   ++ENG S RH+ RR  G   K++  +   EGK S+RG  GG   HEKQ+W+Q
Sbjct: 481 NSSGGH--TLENG-SARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQMWIQ 483

The following BLAST results are available for this feature:

BLAST of ClCG08G000400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039239.1	2.6e-274	87.85	regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK00427.1	2.1e-271	87.48	regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008459659.1	7.4e-269	93.90	PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo]	[more]
XP_038890175.1	1.6e-268	93.71	regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida] >XP_038890...	[more]
XP_011656113.1	6.2e-268	93.71	regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus]	[more]

BLAST of ClCG08G000400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVW4	4.9e-106	45.67	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 P...	[more]
B0S733	1.5e-19	34.13	Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2	[more]
Q9BZI7	4.7e-16	26.24	Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1	[more]
Q9H1J1	2.0e-14	29.76	Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1	[more]
Q10267	2.4e-12	26.11	Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of ClCG08G000400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TD91	1.3e-274	87.85	Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A5D3BML0	1.0e-271	87.48	Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3CB69	3.6e-269	93.90	regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KSY5	3.0e-268	93.71	Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 P...	[more]
A0A1S3CBX5	5.9e-264	92.76	regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of ClCG08G000400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33980.1	3.4e-107	45.67	Smg-4/UPF3 family protein	[more]
AT1G33980.2	3.2e-105	45.32	Smg-4/UPF3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..97 e-value: 6.1E-32 score: 111.8
IPR005120	UPF3 domain	PFAM	PF03467	Smg4_UPF3	coord: 6..168 e-value: 5.7E-51 score: 173.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..439
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 419..439
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 484..514
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 376..415
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..309
None	No IPR available	PANTHER	PTHR13112:SF5	REGULATOR OF NONSENSE TRANSCRIPTS UPF3	coord: 1..525
None	No IPR available	CDD	cd12455	RRM_like_Smg4_UPF3	coord: 9..94 e-value: 5.65272E-33 score: 119.665
IPR039722	Nonsense-mediated mRNA decay protein 3	PANTHER	PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	coord: 1..525
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G000400.1	ClCG08G000400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0045727	positive regulation of translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding